Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p28240 Brassica napus
A07p06750 Brassica napus
Aa31LG8G14440 Aethionema arabicum
Aa31LG9G14580 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.2056 Anthoceros agrestis
Actinidia07850 Actinidia chinensis
Actinidia18827 Actinidia chinensis
Actinidia20616 Actinidia chinensis
Actinidia24712 Actinidia chinensis
Actinidia39353 Actinidia chinensis
Ah.04g161510 Amaranthus hybridus
Ah.16g107490 Amaranthus hybridus
AL3G41980 Arabidopsis lyrata
AL6G42630 Arabidopsis lyrata
AL9U12210 Arabidopsis lyrata
Aqoxy1G00424 Aquilegia oxysepala
Aqoxy1G00450 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.HXUH2I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UYME09 Arachis hypogaea
AT2G04280 Arabidopsis thaliana
AT4G08810 Arabidopsis thaliana
AT4G12700 Arabidopsis thaliana
ATR0737G175 Amborella trichopoda
ATR0751G066 Amborella trichopoda
Atru.chr3.2081 Acer truncatum
Atru.chr6.3428 Acer truncatum
AUR62000002 Chenopodium quinoa
AUR62002384 Chenopodium quinoa
AUR62019172 Chenopodium quinoa
AUR62023803 Chenopodium quinoa
BcaB01g02845 Brassica carinata
BcaB06g26773 Brassica carinata
BcaC01g04753 Brassica carinata
BcaC01g04754 Brassica carinata
BcaC06g35861 Brassica carinata
BolC3t15724H Brassica oleracea
BolC7t41482H Brassica oleracea
BraA03t12032Z Brassica rapa
BraA07t28468Z Brassica rapa
C03p34150 Brassica napus
C07p10330 Brassica napus
CAN.G1071.7 Capsicum annuum
CAN.G282.16 Capsicum annuum
CAN.G294.2 Capsicum annuum
CANSAT11G1557 Cannabis sativa
CANSAT64G2168 Cannabis sativa
CARHR102120 Cardamine hirsuta
CARHR217960 Cardamine hirsuta
CARHR259780 Cardamine hirsuta
Carub.0003s2600 Capsella rubella
Carub.0006s2731 Capsella rubella
Carub.0007s3032 Capsella rubella
Ca_05556_v3 Cicer arietinum L.
Ca_17946_v3 Cicer arietinum L.
Cc01_g00690 Coffea canephora
Cc01_g00700 Coffea canephora
Cc01_g00740 Coffea canephora
Cc05_g02010 Coffea canephora
CDE01G0445 Ceratophyllum demersum
CDE02G0062 Ceratophyllum demersum
CDE10G0463 Ceratophyllum demersum
CDE10G1284 Ceratophyllum demersum
Cfa014204 Carpinus fangiana
Ciclev10014764m.g Citrus clementina
Ciclev10014777m.g Citrus clementina
Ciclev10014812m.g Citrus clementina
CiPaw.03G283600 Carya illinoinensis
CiPaw.13G175900 Carya illinoinensis
CiPaw.14G135600 Carya illinoinensis
ClCG00G001400 Citrullus lanatus
ClCG02G010890 Citrullus lanatus
ClCG03G014450 Citrullus lanatus
COL.COLO4_19651 Corchorus olitorius
COL.COLO4_35041 Corchorus olitorius
Cpa.g.sc119.58 Carica papaya
Cpa.g.sc136.50 Carica papaya
CsaV3_1G041820 Cucumis sativus L.
CsaV3_6G009730 Cucumis sativus L.
CSS0010603 Camellia sinensis var. sinensis
CSS0019099 Camellia sinensis var. sinensis
CSS0022065 Camellia sinensis var. sinensis
CSS0024227 Camellia sinensis var. sinensis
CSS0041425 Camellia sinensis var. sinensis
DCAR_001983 Daucus carota
DCAR_008748 Daucus carota
DCAR_019668 Daucus carota
DCAR_021084 Daucus carota
Dinv05322 Davidia involucrata
Dinv13454 Davidia involucrata
Dinv21320 Davidia involucrata
Duzib133G0522 Durio zibethinus
Duzib138G0785 Durio zibethinus
Duzib150G1669 Durio zibethinus
Duzib168G0211 Durio zibethinus
ECA233G2111 Erigeron canadensis
ECA238G1892 Erigeron canadensis
ECA240G3767 Erigeron canadensis
EL10Ac3g06073 Beta vulgaris
EL10Ac4g10375 Beta vulgaris
Eucgr.B03608 Eucalyptus grandis
Eucgr.J01821 Eucalyptus grandis
Eucgr.K01390 Eucalyptus grandis
FAN02G4471 Fragaria x ananassa
FAN05G3875 Fragaria x ananassa
FAN09G2326 Fragaria x ananassa
FAN09G3321 Fragaria x ananassa
FAN16G2743 Fragaria x ananassa
FvH4_3g45390 Fragaria vesca
FvH4_6g40420 Fragaria vesca
Glyma.02G223300 Glycine max
Glyma.05G156200 Glycine max
Glyma.08G114200 Glycine max
Glyma.14G190100 Glycine max
Gohir.A06G103500 Gossypium hirsutum
Gohir.A07G088000 Gossypium hirsutum
Gohir.A07G163400 Gossypium hirsutum
Gohir.A07G193066 Gossypium hirsutum
Gohir.A08G010900 Gossypium hirsutum
Gohir.D06G110800 Gossypium hirsutum
Gohir.D07G092900 Gossypium hirsutum
Gohir.D07G170400 Gossypium hirsutum
Gohir.D07G199401 Gossypium hirsutum
Gohir.D08G021200 Gossypium hirsutum
Gorai.001G099500 Gossypium raimondii
Gorai.001G190400 Gossypium raimondii
Gorai.001G223300 Gossypium raimondii
Gorai.004G016100 Gossypium raimondii
Gorai.010G126000 Gossypium raimondii
GSVIVG01025447001 Vitis vinifera
GSVIVG01030123001 Vitis vinifera
HanXRQChr02g0057051 Helianthus annuus
HanXRQChr03g0074961 Helianthus annuus
HanXRQChr13g0389951 Helianthus annuus
HanXRQChr13g0389961 Helianthus annuus
HanXRQChr14g0437661 Helianthus annuus
HanXRQChr14g0456041 Helianthus annuus
Haze_12590 Corylus avellana
Haze_22953 Corylus avellana
Hma1.2p1_0599F.1_g186980 Hydrangea macrophylla
Hma1.2p1_0629F.1_g192170 Hydrangea macrophylla
Hma1.2p1_0843F.1_g227370 Hydrangea macrophylla
HPP92_007939 Vanilla planifolia
HPP92_007940 Vanilla planifolia
HPP92_020825 Vanilla planifolia
Lalb_Chr04g0252461 Lupinus albus
Lalb_Chr07g0186601 Lupinus albus
Lalb_Chr10g0103141 Lupinus albus
Lalb_Chr12g0205281 Lupinus albus
Lj1P800T16 Lonicera japonica
Lj2C729G6 Lonicera japonica
Lj4g0026364 Lotus japonicus
Lj8P137T29 Lonicera japonica
LjContig00155g0018256 Lotus japonicus
Lsat_1_v5_gn_2_52660 Lactuca sativa
Lsat_1_v5_gn_9_102580 Lactuca sativa
Manes.03G098896 Manihot esculenta
Manes.12G064400 Manihot esculenta
Manes.13G060100 Manihot esculenta
Manes.15G107900 Manihot esculenta
Mapoly0030s0066 Marchantia polymorpha
MBI04_g09723_MAGBIO Magnolia biondii
MBI13_g05165_MAGBIO Magnolia biondii
MD03G1005400 Malus domestica
MD09G1130100 Malus domestica
MD11G1008000 Malus domestica
MD17G1105300 Malus domestica
Medtr5g069410 Medicago truncatula
Medtr8g085780 Medicago truncatula
MELO3C013455.2 Cucumis melo
MELO3C015597.2 Cucumis melo
Migut.D02550 Erythranthe guttata
Migut.H01276 Erythranthe guttata
Migut.M00068 Erythranthe guttata
MSTRG.12789 Avicennia marina
MSTRG.14101 Avicennia marina
MSTRG.14905 Avicennia marina
MSTRG.18875 Avicennia marina
MSTRG.6618 Avicennia marina
Nitab4.5_0000827g0050 Nicotiana tabacum
Nitab4.5_0001229g0070 Nicotiana tabacum
Nitab4.5_0001730g0070 Nicotiana tabacum
Nitab4.5_0003086g0010 Nicotiana tabacum
Nitab4.5_0003163g0110 Nicotiana tabacum
Nitab4.5_0004941g0050 Nicotiana tabacum
Nitab4.5_0011678g0010 Nicotiana tabacum
Nn1g00901 Nelumbo nucifera
Nn2g15833 Nelumbo nucifera
Nn5g30093 Nelumbo nucifera
Nn7g35890 Nelumbo nucifera
Oeu000667.1 Olea europaea
Oeu012350.2 Olea europaea
Oeu029986.1 Olea europaea
Oeu034484.1 Olea europaea
Oeu040451.1 Olea europaea
Oeu059667.1 Olea europaea
Os07g0633600 Oryza sativa ssp. japonica
Os10g0456400 Oryza sativa ssp. japonica
Peaxi162Scf00047g00217 Petunia axillaris
Peaxi162Scf00349g00066 Petunia axillaris
Peaxi162Scf01164g00004 Petunia axillaris
PGR031G2258 Punica granatum
PGR102G0002 Punica granatum
PGR119G1283 Punica granatum
PGSC0003DMG400001389 Solanum tuberosum
PGSC0003DMG400017387 Solanum tuberosum
PGSC0003DMG400018929 Solanum tuberosum
PGSC0003DMG400028832 Solanum tuberosum
PGSC0003DMG400032216 Solanum tuberosum
Phvul.002G236500 Phaseolus vulgaris
Phvul.008G189900 Phaseolus vulgaris
Potri.001G005500 Populus trichocarpa
Potri.003G219200 Populus trichocarpa
Potri.014G170200 Populus trichocarpa
Pp3c1_20090 Physcomitrium patens
Prupe.3G195000 Prunus persica
Prupe.6G005200 Prunus persica
Psat2g060800 Pisum sativum
Psat5g261280 Pisum sativum
Psat5g261360 Pisum sativum
Psat7g072120 Pisum sativum
PSO339G6177 Papaver somniferum
PSO384G4930 Papaver somniferum
PSO675G2012 Papaver somniferum
QL01p008674 Quercus lobata
QL04p067049 Quercus lobata
RcHm_v2.0_Chr2g0155651 Rosa chinensis
RcHm_v2.0_Chr5g0083201 Rosa chinensis
Rhsim04G0030900 Rhododendron simsii
Rhsim04G0031000 Rhododendron simsii
Rhsim06G0178700 Rhododendron simsii
Rhsim13G0231900 Rhododendron simsii
Sabra01G0004000 Salix brachista
Sabra14G0129700 Salix brachista
SalBow2G1870 Salvia bowleyana
SalBow3G1618 Salvia bowleyana
SalBow7G4720 Salvia bowleyana
Sc06g0009950 Simmondsia chinensis
Sc16g0012190 Simmondsia chinensis
Sc21g0000430 Simmondsia chinensis
Sed0000038 Sechium edule
Sed0001221 Sechium edule
Sed0001523 Sechium edule
Sed0020876 Sechium edule
SEGI_11312 Sequoiadendron giganteum
SEGI_24137 Sequoiadendron giganteum
SGA_v2.0_scaffold181G39703 Striga asiatica
SGA_v2.0_scaffold6G03293 Striga asiatica
SGA_v2.0_scaffold73G24482 Striga asiatica
SGA_v2.0_scaffold89G27597 Striga asiatica
SHI30244 Sapria himalayana
SHI37431 Sapria himalayana
SMO351G0367 Selaginella moellendorffii
SMO356G0757 Selaginella moellendorffii
Solyc01g005690.3 Solanum lycopersicum
Solyc07g045210.1 Solanum lycopersicum
Solyc12g006200.1 Solanum lycopersicum
Sopen01g001700 Solanum pennellii
Sopen07g023760 Solanum pennellii
Sopen12g002160 Solanum pennellii
Sp3g23160 Schrenkiella parvula
Sp6g08960 Schrenkiella parvula
TAR627G0535 Trochodendron aralioides
TAR629G2672 Trochodendron aralioides
TAR633G0785 Trochodendron aralioides
TAR636G0352 Trochodendron aralioides
THA.LOC104808835 Tarenaya hassleriana
THA.LOC104811070 Tarenaya hassleriana
THA.LOC104815369 Tarenaya hassleriana
Thecc.01G199200 Theobroma cacao
Thecc.09G207800 Theobroma cacao
Thhalv10002463m.g Eutrema salsugineum
Thhalv10028555m.g Eutrema salsugineum
TPR.G13835 Trifolium pratense
TPR.G20833 Trifolium pratense
TWI32G1336 Tripterygium wilfordii
TWI36G1600 Tripterygium wilfordii
TWI60G0609 Tripterygium wilfordii
TWI75G1124 Tripterygium wilfordii
unitig_62.g23252 Utricularia gibba
unitig_744.g24405 Utricularia gibba
unitig_746.g26647 Utricularia gibba
unitig_746.g26648 Utricularia gibba
vmacro04231 Vaccinium macrocarpon
vmacro09469 Vaccinium macrocarpon
vmacro09470 Vaccinium macrocarpon
vmacro12063 Vaccinium macrocarpon
VMungo0251G2389 Vigna mungo
VMungo0647G0365 Vigna mungo
Zm00001eb046840 Zea mays
Zm00001eb328490 Zea mays

User provided reference genes

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