Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p61950 Brassica napus
A04p20390 Brassica napus
A06p48200 Brassica napus
A08p06100 Brassica napus
A10p06800 Brassica napus
Aa31LG4G5780 Aethionema arabicum
Aa31LG5G9290 Aethionema arabicum
Aa31LG9G12940 Aethionema arabicum
Actinidia22626 Actinidia chinensis
Actinidia23272 Actinidia chinensis
Actinidia29870 Actinidia chinensis
Actinidia38056 Actinidia chinensis
Ah.04g164900 Amaranthus hybridus
AL1G53050 Arabidopsis lyrata
AL4G19470 Arabidopsis lyrata
AL7G18180 Arabidopsis lyrata
AL8G18070 Arabidopsis lyrata
Aqoxy5G01241 Aquilegia oxysepala
Aqoxy6G01330 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A3ZM58 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F866LQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MGR2S5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NCQ92W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZEA9SY Arachis hypogaea
AT1G45545 Arabidopsis thaliana
AT2G26570 Arabidopsis thaliana
AT4G33390 Arabidopsis thaliana
AT5G42880 Arabidopsis thaliana
ATR0618G153 Amborella trichopoda
ATR0753G087 Amborella trichopoda
Atru.chr13.688 Acer truncatum
Atru.chr13.689 Acer truncatum
AUR62029382 Chenopodium quinoa
AUR62031988 Chenopodium quinoa
AUR62034288 Chenopodium quinoa
BcaB04g17564 Brassica carinata
BcaB06g28099 Brassica carinata
BcaB07g33869 Brassica carinata
BcaC02g08302 Brassica carinata
BcaC02g10797 Brassica carinata
BcaC03g15891 Brassica carinata
BcaC06g31742 Brassica carinata
BcaC07g37257 Brassica carinata
BcaC07g37258 Brassica carinata
BcaC08g42912 Brassica carinata
BcaNung02169 Brassica carinata
BolC1t00509H Brassica oleracea
BolC4t24003H Brassica oleracea
BolC4t27142H Brassica oleracea
BolC6t35281H Brassica oleracea
BolC7t46406H Brassica oleracea
BolC8t47531H Brassica oleracea
BraA03t15235Z Brassica rapa
BraA04t17617Z Brassica rapa
BraA06t27689Z Brassica rapa
BraA08t32610Z Brassica rapa
BraA10t42939Z Brassica rapa
C01p05300 Brassica napus
C04p25030 Brassica napus
C04p56160 Brassica napus
C06p01500 Brassica napus
C07p59610 Brassica napus
C08p06890 Brassica napus
CAN.G1518.10 Capsicum annuum
CAN.G371.10 Capsicum annuum
CAN.G519.16 Capsicum annuum
CAN.G775.12 Capsicum annuum
CAN.G797.14 Capsicum annuum
CANSAT54G1228 Cannabis sativa
CARHR036470 Cardamine hirsuta
CARHR115260 Cardamine hirsuta
CARHR181260 Cardamine hirsuta
CARHR241430 Cardamine hirsuta
Carub.0001s3576 Capsella rubella
Carub.0004s0682 Capsella rubella
Carub.0007s0710 Capsella rubella
Carub.0008s0603 Capsella rubella
Ca_13294_v3 Cicer arietinum L.
Ca_13295_v3 Cicer arietinum L.
Ca_15951_v3 Cicer arietinum L.
Ca_22547_v3 Cicer arietinum L.
Cc10_g04200 Coffea canephora
CDE04G1654 Ceratophyllum demersum
CDE04G2253 Ceratophyllum demersum
CDE08G0419 Ceratophyllum demersum
CDE08G0783 Ceratophyllum demersum
CDE10G0372 Ceratophyllum demersum
CDE10G0492 Ceratophyllum demersum
CDE10G0789 Ceratophyllum demersum
Ciclev10000215m.g Citrus clementina
CiPaw.16G044000 Carya illinoinensis
ClCG05G019850 Citrullus lanatus
ClCG08G015930 Citrullus lanatus
COL.COLO4_26504 Corchorus olitorius
Cpa.g.sc49.13 Carica papaya
CsaV3_2G027820 Cucumis sativus L.
CsaV3_4G034290 Cucumis sativus L.
CSS0014496 Camellia sinensis var. sinensis
CSS0021760 Camellia sinensis var. sinensis
CSS0028592 Camellia sinensis var. sinensis
DCAR_008794 Daucus carota
DCAR_012774 Daucus carota
DCAR_019456 Daucus carota
DCAR_020930 Daucus carota
Dinv35964 Davidia involucrata
Dinv39319 Davidia involucrata
Duzib041G0218 Durio zibethinus
Duzib093G2000 Durio zibethinus
Duzib116G0831 Durio zibethinus
ECA232G3222 Erigeron canadensis
ECA246G1904 Erigeron canadensis
ECA247G3398 Erigeron canadensis
EL10Ac4g08165 Beta vulgaris
Eucgr.F00229 Eucalyptus grandis
Eucgr.F02354 Eucalyptus grandis
FAN15G0775 Fragaria x ananassa
FAN20G1060 Fragaria x ananassa
FAN27G2836 Fragaria x ananassa
FvH4_2g34472 Fragaria vesca
Glyma.04G038600 Glycine max
Glyma.06G039600 Glycine max
Glyma.08G266500 Glycine max
Glyma.14G082600 Glycine max
Glyma.16G095000 Glycine max
Gohir.A01G119500 Gossypium hirsutum
Gohir.A05G202100 Gossypium hirsutum
Gohir.A05G202800 Gossypium hirsutum
Gohir.A06G018500 Gossypium hirsutum
Gohir.D01G107800 Gossypium hirsutum
Gohir.D05G205200 Gossypium hirsutum
Gohir.D05G206000 Gossypium hirsutum
Gohir.D06G016700 Gossypium hirsutum
Gorai.002G132000 Gossypium raimondii
Gorai.009G211500 Gossypium raimondii
Gorai.009G212300 Gossypium raimondii
Gorai.010G019600 Gossypium raimondii
GSVIVG01009499001 Vitis vinifera
HanXRQChr02g0039441 Helianthus annuus
HanXRQChr04g0103521 Helianthus annuus
HanXRQChr05g0150901 Helianthus annuus
HanXRQChr09g0267631 Helianthus annuus
HanXRQChr12g0381351 Helianthus annuus
HanXRQChr14g0439561 Helianthus annuus
Haze_17528 Corylus avellana
Hma1.2p1_0982F.1_g243970 Hydrangea macrophylla
HPP92_005959 Vanilla planifolia
HPP92_005960 Vanilla planifolia
HPP92_010965 Vanilla planifolia
HPP92_011180 Vanilla planifolia
HPP92_019275 Vanilla planifolia
Hund02211 Selenicereus undatus
Hund22919 Selenicereus undatus
Lalb_Chr05g0228981 Lupinus albus
Lalb_Chr08g0245331 Lupinus albus
Lalb_Chr09g0334621 Lupinus albus
Lalb_Chr11g0062551 Lupinus albus
Lalb_Chr14g0368711 Lupinus albus
Lalb_Chr16g0391921 Lupinus albus
Lalb_Chr22g0355141 Lupinus albus
Lalb_Chr24g0399271 Lupinus albus
Lj1g0023955 Lotus japonicus
Lj4A55G38 Lonicera japonica
Lj4A773T45 Lonicera japonica
Lj4g0004700 Lotus japonicus
Lj5g0004674 Lotus japonicus
Lj8C321T8 Lonicera japonica
Lsat_1_v5_gn_4_125861 Lactuca sativa
Lsat_1_v5_gn_6_112081 Lactuca sativa
Manes.05G173800 Manihot esculenta
Manes.18G036800 Manihot esculenta
MBI02_g02991_MAGBIO Magnolia biondii
MBI06_g36649_MAGBIO Magnolia biondii
MD08G1102100 Malus domestica
MD15G1083600 Malus domestica
Medtr1g019490 Medicago truncatula
Medtr3g101660 Medicago truncatula
Medtr8g070840 Medicago truncatula
MELO3C010861.2 Cucumis melo
MELO3C016749.2 Cucumis melo
Migut.C00583 Erythranthe guttata
Migut.N02707 Erythranthe guttata
MSTRG.24331 Avicennia marina
MSTRG.25094 Avicennia marina
Nitab4.5_0000017g0240 Nicotiana tabacum
Nitab4.5_0000287g0340 Nicotiana tabacum
Nitab4.5_0001580g0060 Nicotiana tabacum
Nitab4.5_0002501g0030 Nicotiana tabacum
Nitab4.5_0003091g0060 Nicotiana tabacum
Nitab4.5_0003427g0050 Nicotiana tabacum
Nn1g04869 Nelumbo nucifera
Nn2g14094 Nelumbo nucifera
Nn4g25321 Nelumbo nucifera
Nn5g30331 Nelumbo nucifera
Oeu017168.1 Olea europaea
Oeu049972.1 Olea europaea
Oeu057283.1 Olea europaea
Os03g0395300 Oryza sativa ssp. japonica
Os06g0314000 Oryza sativa ssp. japonica
Os07g0619100 Oryza sativa ssp. japonica
Os09g0458000 Oryza sativa ssp. japonica
Peaxi162Scf00010g03010 Petunia axillaris
Peaxi162Scf00128g00445 Petunia axillaris
Peaxi162Scf00252g00915 Petunia axillaris
Peaxi162Scf01073g00003 Petunia axillaris
PGR031G0761 Punica granatum
PGSC0003DMG400004459 Solanum tuberosum
PGSC0003DMG400008014 Solanum tuberosum
PGSC0003DMG400015441 Solanum tuberosum
Phvul.001G021900 Phaseolus vulgaris
Phvul.003G274100 Phaseolus vulgaris
Phvul.009G064800 Phaseolus vulgaris
Potri.002G126700 Populus trichocarpa
Potri.014G029800 Populus trichocarpa
Prupe.1G436100 Prunus persica
Psat4g111800 Pisum sativum
Psat5g043320 Pisum sativum
Psat6g013120 Pisum sativum
PSO478G0394 Papaver somniferum
PSO541G0218 Papaver somniferum
PSO675G7561 Papaver somniferum
PSO782G3177 Papaver somniferum
QL02p004898 Quercus lobata
RcHm_v2.0_Chr6g0307881 Rosa chinensis
Rhsim06G0049500 Rhododendron simsii
Rhsim07G0228500 Rhododendron simsii
Sabra02G0099100 Salix brachista
Sabra03G0063900 Salix brachista
Sabra14G0020600 Salix brachista
Sabra15G0034100 Salix brachista
SalBow7G0921 Salvia bowleyana
SalBow8G4627 Salvia bowleyana
Sc02g0007080 Simmondsia chinensis
Sc26g0004050 Simmondsia chinensis
Sed0003605 Sechium edule
Sed0004666 Sechium edule
Sed0014505 Sechium edule
Sed0016224 Sechium edule
SGA_v2.0_scaffold14G07006 Striga asiatica
SGA_v2.0_scaffold330G48891 Striga asiatica
Solyc04g078950.1 Solanum lycopersicum
Solyc04g078970.3 Solanum lycopersicum
Solyc05g042150.2 Solanum lycopersicum
Solyc07g022910.3 Solanum lycopersicum
Solyc07g026880.3 Solanum lycopersicum
Solyc08g015840.3 Solanum lycopersicum
Solyc12g088830.3 Solanum lycopersicum
Sopen04g032550 Solanum pennellii
Sopen07g011830 Solanum pennellii
Sopen10g017720 Solanum pennellii
Sopen12g030720 Solanum pennellii
Sp1g34150 Schrenkiella parvula
Sp2g07610 Schrenkiella parvula
Sp4g07970 Schrenkiella parvula
Sp7g31090 Schrenkiella parvula
TAR625G0055 Trochodendron aralioides
TAR628G0057 Trochodendron aralioides
TAR628G1644 Trochodendron aralioides
THA.LOC104804432 Tarenaya hassleriana
THA.LOC104812576 Tarenaya hassleriana
THA.LOC104814677 Tarenaya hassleriana
THA.LOC104819467 Tarenaya hassleriana
Thecc.08G008000 Theobroma cacao
Thhalv10001243m.g Eutrema salsugineum
Thhalv10003156m.g Eutrema salsugineum
Thhalv10011258m.g Eutrema salsugineum
Thhalv10027224m.g Eutrema salsugineum
TPR.G24155 Trifolium pratense
TPR.G3756 Trifolium pratense
TPR.G6151 Trifolium pratense
TWI36G0517 Tripterygium wilfordii
TWI56G0678 Tripterygium wilfordii
unitig_22.g6771 Utricularia gibba
unitig_578.g16533 Utricularia gibba
unitig_8.g3372 Utricularia gibba
vmacro04450 Vaccinium macrocarpon
vmacro04451 Vaccinium macrocarpon
vmacro21525 Vaccinium macrocarpon
VMungo0251G1214 Vigna mungo
VMungo0647G1738 Vigna mungo
VMungo1309G1221 Vigna mungo
Zm00001eb000760 Zea mays
Zm00001eb006320 Zea mays
Zm00001eb019250 Zea mays
Zm00001eb100810 Zea mays
Zm00001eb223520 Zea mays
Zm00001eb314920 Zea mays
Zm00001eb327640 Zea mays
Zm00001eb392710 Zea mays
Zm00001eb401600 Zea mays
Zm00001eb404200 Zea mays

User provided reference genes

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