Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p34610 Brassica napus
A07p00600 Brassica napus
Aa31LG5G16790 Aethionema arabicum
Aa31LG8G17000 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.691 Anthoceros agrestis
Actinidia09438 Actinidia chinensis
Actinidia20405 Actinidia chinensis
Actinidia23458 Actinidia chinensis
Actinidia40213 Actinidia chinensis
Ah.09g230830 Amaranthus hybridus
Ah.13g071560 Amaranthus hybridus
AL3G17160 Arabidopsis lyrata
AL3G48050 Arabidopsis lyrata
Aqoxy2G03190 Aquilegia oxysepala
Aqoxy5G00563 Aquilegia oxysepala
Aqoxy7G01509 Aquilegia oxysepala
Aqoxy7G03127 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CH6KF4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I5K3IU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MYDP5Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YNQ283 Arachis hypogaea
AT2G20050 Arabidopsis thaliana
AT3G06270 Arabidopsis thaliana
ATR0315G080 Amborella trichopoda
ATR0626G385 Amborella trichopoda
Atru.chr4.2698 Acer truncatum
Atru.chr7.1420 Acer truncatum
AUR62010934 Chenopodium quinoa
AUR62021446 Chenopodium quinoa
AUR62040380 Chenopodium quinoa
AUR62040725 Chenopodium quinoa
BcaB03g14667 Brassica carinata
BcaB03g16799 Brassica carinata
BcaB04g21326 Brassica carinata
BcaC05g30041 Brassica carinata
BcaC06g36681 Brassica carinata
BcaC09g47880 Brassica carinata
BcaC09g47881 Brassica carinata
BNapus_Darmor_BZH_scaffold_118p00240 Brassica napus
BolC1t05631H Brassica oleracea
BolC1t05633H Brassica oleracea
BolC3t16487H Brassica oleracea
BolC7t40548H Brassica oleracea
BraA01t04446Z Brassica rapa
BraA01t04448Z Brassica rapa
BraA03t12637Z Brassica rapa
BraA07t27856Z Brassica rapa
C03p42070 Brassica napus
C07p01090 Brassica napus
CAN.G60.8 Capsicum annuum
CAN.G889.14 Capsicum annuum
CANSAT78G0472 Cannabis sativa
CARHR080790 Cardamine hirsuta
CARHR110520 Cardamine hirsuta
Carub.0003s0570 Capsella rubella
Carub.0003s3431 Capsella rubella
Ca_00592_v3 Cicer arietinum L.
Ca_25556_v3 Cicer arietinum L.
CBR_g34531 Chara braunii
CBR_g34538 Chara braunii
CBR_g57644 Chara braunii
Cc03_g02780 Coffea canephora
Cc06_g10150 Coffea canephora
CDE01G0312 Ceratophyllum demersum
CDE01G0434 Ceratophyllum demersum
CDE05G1729 Ceratophyllum demersum
CDE05G3143 Ceratophyllum demersum
CDE12G0565 Ceratophyllum demersum
Cfa003217 Carpinus fangiana
Ciclev10005047m.g Citrus clementina
Ciclev10007299m.g Citrus clementina
CiPaw.01G156900 Carya illinoinensis
CiPaw.02G089700 Carya illinoinensis
CiPaw.03G227400 Carya illinoinensis
CiPaw.03G227500 Carya illinoinensis
ClCG05G005550 Citrullus lanatus
ClCG06G005630 Citrullus lanatus
ClCG06G008930 Citrullus lanatus
COL.COLO4_13974 Corchorus olitorius
COL.COLO4_34797 Corchorus olitorius
Cpa.g.sc16.68 Carica papaya
Cpa.g.sc40.28 Carica papaya
Cpa.g.sc40.29 Carica papaya
Cre01.g041450 Chlamydomonas reinhardtii
Cre03.g170250 Chlamydomonas reinhardtii
Cre10.g443550 Chlamydomonas reinhardtii
CsaV3_1G019530 Cucumis sativus L.
CsaV3_3G013890 Cucumis sativus L.
CsaV3_6G005520 Cucumis sativus L.
CsaV3_6G021270 Cucumis sativus L.
CSS0003297 Camellia sinensis var. sinensis
CSS0007564 Camellia sinensis var. sinensis
CSS0012448 Camellia sinensis var. sinensis
CSS0017342 Camellia sinensis var. sinensis
CSS0049454 Camellia sinensis var. sinensis
DCAR_024695 Daucus carota
DCAR_030579 Daucus carota
Dinv38354 Davidia involucrata
Dinv38355 Davidia involucrata
Dinv41647 Davidia involucrata
Dinv44458 Davidia involucrata
Duzib052G0364 Durio zibethinus
Duzib168G0382 Durio zibethinus
Duzib212G0320 Durio zibethinus
ECA233G2532 Erigeron canadensis
EL10Ac3g06537 Beta vulgaris
EL10Ac8g18420 Beta vulgaris
Eucgr.H03639 Eucalyptus grandis
FAN07G0586 Fragaria x ananassa
FAN12G2683 Fragaria x ananassa
FAN12G2983 Fragaria x ananassa
FAN17G2549 Fragaria x ananassa
FAN19G2369 Fragaria x ananassa
FAN19G3205 Fragaria x ananassa
FAN22G1467 Fragaria x ananassa
FAN23G0742 Fragaria x ananassa
FAN26G1003 Fragaria x ananassa
FAN26G1973 Fragaria x ananassa
FAN28G0622 Fragaria x ananassa
FvH4_1g05740 Fragaria vesca
FvH4_4g13960 Fragaria vesca
Glyma.01G146600 Glycine max
Glyma.07G253900 Glycine max
Glyma.09G194200 Glycine max
Glyma.13G211800 Glycine max
Glyma.15G100900 Glycine max
Glyma.17G020400 Glycine max
Gohir.A02G044700 Gossypium hirsutum
Gohir.A06G065400 Gossypium hirsutum
Gohir.A07G004300 Gossypium hirsutum
Gohir.A09G231900 Gossypium hirsutum
Gohir.A10G105901 Gossypium hirsutum
Gohir.D01G122750 Gossypium hirsutum
Gohir.D02G050600 Gossypium hirsutum
Gohir.D06G064000 Gossypium hirsutum
Gohir.D07G007900 Gossypium hirsutum
Gohir.D09G233000 Gossypium hirsutum
Gohir.D10G162232 Gossypium hirsutum
Gorai.001G007600 Gossypium raimondii
Gorai.001G182600 Gossypium raimondii
Gorai.005G055900 Gossypium raimondii
Gorai.006G255900 Gossypium raimondii
Gorai.010G074600 Gossypium raimondii
Gorai.011G181400 Gossypium raimondii
GSVIVG01015338001 Vitis vinifera
GSVIVG01017855001 Vitis vinifera
HanXRQChr07g0192671 Helianthus annuus
HanXRQChr16g0507681 Helianthus annuus
Haze_01006 Corylus avellana
Haze_25790 Corylus avellana
Haze_25791 Corylus avellana
Hma1.2p1_0643F.1_g194440 Hydrangea macrophylla
Hma1.2p1_0945F.1_g240170 Hydrangea macrophylla
Hma1.2p1_0945F.1_g240180 Hydrangea macrophylla
HPP92_000392 Vanilla planifolia
HPP92_005272 Vanilla planifolia
HPP92_005273 Vanilla planifolia
HPP92_011802 Vanilla planifolia
Hund20672 Selenicereus undatus
Lalb_Chr15g0087201 Lupinus albus
Lalb_Chr18g0055901 Lupinus albus
Lalb_Chr22g0352601 Lupinus albus
Lalb_Chr24g0397361 Lupinus albus
Lj2g0022100 Lotus japonicus
Lj3C806G2 Lonicera japonica
Lj4g0000925 Lotus japonicus
Lj6A665G70 Lonicera japonica
Lj6g0010250 Lotus japonicus
Lj7C659T6 Lonicera japonica
Lj7C659T7 Lonicera japonica
Lsat_1_v5_gn_1_95220 Lactuca sativa
Lsat_1_v5_gn_3_107940 Lactuca sativa
Lsat_1_v5_gn_3_107960 Lactuca sativa
Lsat_1_v5_gn_5_89141 Lactuca sativa
Lsat_1_v5_gn_6_14841 Lactuca sativa
Lsat_1_v5_gn_8_84480 Lactuca sativa
Lsat_1_v5_gn_8_96380 Lactuca sativa
Manes.03G187800 Manihot esculenta
Manes.15G020300 Manihot esculenta
Manes.16G111900 Manihot esculenta
Mapoly0116s0039 Marchantia polymorpha
MBI01_g06185_MAGBIO Magnolia biondii
MCO16G141 Micromonas commoda
MD02G1058500 Malus domestica
MD13G1178700 Malus domestica
MD15G1192800 Malus domestica
MD16G1179900 Malus domestica
Medtr2g020970 Medicago truncatula
Medtr4g118340 Medicago truncatula
Medtr6g087000 Medicago truncatula
MELO3C006581.2 Cucumis melo
MELO3C021385.2 Cucumis melo
MELO3C024635.2 Cucumis melo
Migut.G00279 Erythranthe guttata
Migut.G00287 Erythranthe guttata
Migut.K00517 Erythranthe guttata
MSTRG.10027 Avicennia marina
MSTRG.26370 Avicennia marina
MSTRG.3974 Avicennia marina
Nitab4.5_0000010g0080 Nicotiana tabacum
Nitab4.5_0000059g0180 Nicotiana tabacum
Nitab4.5_0000952g0070 Nicotiana tabacum
Nitab4.5_0008532g0010 Nicotiana tabacum
Nn3g18153 Nelumbo nucifera
Nn3g21172 Nelumbo nucifera
Nn3g21173 Nelumbo nucifera
Nn4g26124 Nelumbo nucifera
Oeu017817.1 Olea europaea
Oeu026083.1 Olea europaea
Oeu026084.1 Olea europaea
Oeu029295.3 Olea europaea
Oeu037985.1 Olea europaea
Oeu044813.1 Olea europaea
Os02g0281000 Oryza sativa ssp. japonica
Os07g0646100 Oryza sativa ssp. japonica
Peaxi162Scf00095g00528 Petunia axillaris
Peaxi162Scf00539g00036 Petunia axillaris
PGR142G4412 Punica granatum
PGSC0003DMG400032110 Solanum tuberosum
Phvul.003G098000 Phaseolus vulgaris
Phvul.004G169300 Phaseolus vulgaris
Phvul.006G157900 Phaseolus vulgaris
Potri.008G198700 Populus trichocarpa
Potri.010G028300 Populus trichocarpa
Potri.018G084900 Populus trichocarpa
Pp3c16_18360 Physcomitrium patens
Pp3c25_7050 Physcomitrium patens
Pp3c2_4410 Physcomitrium patens
PRCOL_00002746 Prasinoderma coloniale
Prupe.1G147500 Prunus persica
Prupe.7G224500 Prunus persica
Psat0ss7919g0120 Pisum sativum
Psat1g045440 Pisum sativum
Psat1g185400 Pisum sativum
PSO170G3874 Papaver somniferum
PSO210G1626 Papaver somniferum
PSO210G3200 Papaver somniferum
PSO210G3424 Papaver somniferum
PSO302G0301 Papaver somniferum
QL02p043064 Quercus lobata
QL06p006161 Quercus lobata
RcHm_v2.0_Chr2g0091381 Rosa chinensis
RcHm_v2.0_Chr4g0419711 Rosa chinensis
Rhsim04G0213000 Rhododendron simsii
Rhsim05G0043400 Rhododendron simsii
Sabra08G0161900 Salix brachista
Sabra10G0012500 Salix brachista
Sabra18G0073300 Salix brachista
SalBow5G1246 Salvia bowleyana
SalBow5G1616 Salvia bowleyana
Sc13g0003800 Simmondsia chinensis
Sc14g0000410 Simmondsia chinensis
Sc25g0004520 Simmondsia chinensis
Sc25g0004530 Simmondsia chinensis
Sed0008742 Sechium edule
Sed0021399 Sechium edule
Sed0023246 Sechium edule
Sed0028015 Sechium edule
SEGI_17721 Sequoiadendron giganteum
SEGI_22759 Sequoiadendron giganteum
SEGI_23538 Sequoiadendron giganteum
SEGI_40800 Sequoiadendron giganteum
SGA_v2.0_scaffold142G35636 Striga asiatica
SGA_v2.0_scaffold19G08755 Striga asiatica
SGA_v2.0_scaffold237G43851 Striga asiatica
SHI00348 Sapria himalayana
SMO119G0320 Selaginella moellendorffii
Solyc01g080400.3 Solanum lycopersicum
Solyc05g018300.3 Solanum lycopersicum
Sopen01g032210 Solanum pennellii
Sopen05g015040 Solanum pennellii
Sp3g05190 Schrenkiella parvula
Sp3g33360 Schrenkiella parvula
TAR365G0525 Trochodendron aralioides
TAR383G0479 Trochodendron aralioides
TAR636G1889 Trochodendron aralioides
THA.LOC104802736 Tarenaya hassleriana
THA.LOC104804013 Tarenaya hassleriana
THA.LOC104818829 Tarenaya hassleriana
Thecc.04G271900 Theobroma cacao
Thecc.09G104600 Theobroma cacao
Thhalv10001889m.g Eutrema salsugineum
Thhalv10021055m.g Eutrema salsugineum
TPR.G28129 Trifolium pratense
TPR.G28826 Trifolium pratense
TWI09G0880 Tripterygium wilfordii
TWI34G0335 Tripterygium wilfordii
unitig_32.g11743 Utricularia gibba
vmacro08243 Vaccinium macrocarpon
vmacro10875 Vaccinium macrocarpon
VMungo0464G0217 Vigna mungo
VMungo0540G0073 Vigna mungo
Zm00001eb110450 Zea mays
Zm00001eb203570 Zea mays
Zm00001eb329360 Zea mays

User provided reference genes

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