Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p28600 Brassica napus
A03p13890 Brassica napus
A10p12920 Brassica napus
Aa31LG3G11580 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1382 Anthoceros agrestis
Actinidia05016 Actinidia chinensis
Actinidia35398 Actinidia chinensis
Ah.06g181380 Amaranthus hybridus
Ah.09g233990 Amaranthus hybridus
AL8G31210 Arabidopsis lyrata
Aqoxy1G04242 Aquilegia oxysepala
Aqoxy7G03072 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4X54GZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7R1K2X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C3PPAJ Arachis hypogaea
AT5G55630 Arabidopsis thaliana
ATR0827G060 Amborella trichopoda
Atru.chr1.2304 Acer truncatum
Atru.chr1.2308 Acer truncatum
Atru.chr2.3675 Acer truncatum
AUR62012835 Chenopodium quinoa
AUR62017082 Chenopodium quinoa
AUR62017084 Chenopodium quinoa
AUR62021824 Chenopodium quinoa
AUR62036412 Chenopodium quinoa
AUR62036413 Chenopodium quinoa
AUR62036414 Chenopodium quinoa
AUR62036415 Chenopodium quinoa
AUR62036439 Chenopodium quinoa
AUR62036440 Chenopodium quinoa
AUR62036441 Chenopodium quinoa
BcaB01g01743 Brassica carinata
BcaB01g04356 Brassica carinata
BcaB04g20205 Brassica carinata
BcaB08g35924 Brassica carinata
BcaC01g06385 Brassica carinata
BcaC04g20213 Brassica carinata
BcaC09g49469 Brassica carinata
BolC1t03584H Brassica oleracea
BolC3t14057H Brassica oleracea
BolC9t57513H Brassica oleracea
BraA01t03043Z Brassica rapa
BraA03t10692Z Brassica rapa
BraA06t27148Z Brassica rapa
BraA10t43384Z Brassica rapa
C01p36260 Brassica napus
C03p16340 Brassica napus
C09p46610 Brassica napus
CAN.G337.12 Capsicum annuum
CAN.G492.35 Capsicum annuum
CANSAT11G0069 Cannabis sativa
CANSAT11G1052 Cannabis sativa
CANSAT56G3527 Cannabis sativa
CARHR268940 Cardamine hirsuta
CARHR268950 Cardamine hirsuta
Carub.0008s1600 Capsella rubella
Ca_06389_v3 Cicer arietinum L.
Ca_21001_v3 Cicer arietinum L.
CBR_g45236 Chara braunii
Cc05_g14860 Coffea canephora
Cc09_g00520 Coffea canephora
CDE07G0770 Ceratophyllum demersum
Cfa000049 Carpinus fangiana
Cfa020204 Carpinus fangiana
Cfa020205 Carpinus fangiana
Cfa020206 Carpinus fangiana
Ciclev10008774m.g Citrus clementina
Ciclev10010277m.g Citrus clementina
Ciclev10018001m.g Citrus clementina
CiPaw.09G107500 Carya illinoinensis
CiPaw.11G202800 Carya illinoinensis
CiPaw.11G202900 Carya illinoinensis
CiPaw.12G137300 Carya illinoinensis
CiPaw.12G137400 Carya illinoinensis
ClCG01G010950 Citrullus lanatus
ClCG09G021230 Citrullus lanatus
COL.COLO4_07101 Corchorus olitorius
COL.COLO4_09816 Corchorus olitorius
COL.COLO4_09817 Corchorus olitorius
COL.COLO4_31923 Corchorus olitorius
Cpa.g.c35467.1 Carica papaya
Cpa.g.sc12.158 Carica papaya
Cpa.g.sc12.161 Carica papaya
CsaV3_1G015510 Cucumis sativus L.
CsaV3_7G015050 Cucumis sativus L.
CSS0002720 Camellia sinensis var. sinensis
CSS0008931 Camellia sinensis var. sinensis
DCAR_002235 Daucus carota
DCAR_018845 Daucus carota
DCAR_018849 Daucus carota
Dinv10324 Davidia involucrata
Dinv40850 Davidia involucrata
Duzib170G0061 Durio zibethinus
Duzib213G0694 Durio zibethinus
Duzib235G0378 Durio zibethinus
Duzib268G0176 Durio zibethinus
ECA232G3152 Erigeron canadensis
ECA236G0329 Erigeron canadensis
ECA240G3229 Erigeron canadensis
ECA246G1874 Erigeron canadensis
ECA248G3442 Erigeron canadensis
EL10Ac4g07595 Beta vulgaris
EL10Ac4g07596 Beta vulgaris
EL10Ac8g19684 Beta vulgaris
EL10Ac8g20251 Beta vulgaris
Eucgr.D01452 Eucalyptus grandis
Eucgr.D01453 Eucalyptus grandis
Eucgr.D01456 Eucalyptus grandis
Eucgr.D01460 Eucalyptus grandis
Eucgr.D01466 Eucalyptus grandis
Eucgr.F03693 Eucalyptus grandis
Eucgr.L00166 Eucalyptus grandis
Eucgr.L00167 Eucalyptus grandis
Eucgr.L03172 Eucalyptus grandis
Eucgr.L03173 Eucalyptus grandis
Eucgr.L03293 Eucalyptus grandis
FAN11G1507 Fragaria x ananassa
FAN16G0524 Fragaria x ananassa
FAN16G0680 Fragaria x ananassa
FAN21G0049 Fragaria x ananassa
FAN21G2698 Fragaria x ananassa
FAN25G1130 Fragaria x ananassa
FAN25G1158 Fragaria x ananassa
FAN25G2304 Fragaria x ananassa
FAN25G2388 Fragaria x ananassa
FAN25G3096 Fragaria x ananassa
FvH4_3g00500 Fragaria vesca
FvH4_3g29400 Fragaria vesca
FvH4_3g29410 Fragaria vesca
Glyma.02G299700 Glycine max
Glyma.14G014100 Glycine max
Glyma.17G006800 Glycine max
Gohir.A01G090700 Gossypium hirsutum
Gohir.A01G090800 Gossypium hirsutum
Gohir.A01G090900 Gossypium hirsutum
Gohir.A06G156200 Gossypium hirsutum
Gohir.A13G133600 Gossypium hirsutum
Gohir.D01G076000 Gossypium hirsutum
Gohir.D01G076100 Gossypium hirsutum
Gohir.D01G076200 Gossypium hirsutum
Gohir.D06G162500 Gossypium hirsutum
Gohir.D13G136900 Gossypium hirsutum
Gorai.002G099200 Gossypium raimondii
Gorai.002G099300 Gossypium raimondii
Gorai.002G099400 Gossypium raimondii
Gorai.010G189700 Gossypium raimondii
Gorai.013G153400 Gossypium raimondii
GSVIVG01003486001 Vitis vinifera
GSVIVG01003490001 Vitis vinifera
GSVIVG01014660001 Vitis vinifera
GSVIVG01014661001 Vitis vinifera
GSVIVG01014662001 Vitis vinifera
HanXRQChr03g0077911 Helianthus annuus
HanXRQChr05g0161831 Helianthus annuus
HanXRQChr05g0161841 Helianthus annuus
HanXRQChr08g0231201 Helianthus annuus
HanXRQChr08g0233341 Helianthus annuus
HanXRQChr10g0285111 Helianthus annuus
HanXRQChr13g0408131 Helianthus annuus
HanXRQChr17g0546841 Helianthus annuus
Haze_07003 Corylus avellana
Haze_09811 Corylus avellana
Haze_09812 Corylus avellana
Hma1.2p1_0036F.1_g022480 Hydrangea macrophylla
HPP92_014027 Vanilla planifolia
HPP92_028358 Vanilla planifolia
Hund01901 Selenicereus undatus
Hund23124 Selenicereus undatus
Lalb_Chr07g0176951 Lupinus albus
Lalb_Chr17g0348921 Lupinus albus
Lj1A1245T28 Lonicera japonica
Lj4g0002058 Lotus japonicus
Lj6A322T19 Lonicera japonica
Lj6A330T17 Lonicera japonica
Lj6g0025644 Lotus japonicus
Lj8A178T71 Lonicera japonica
Lj8A178T72 Lonicera japonica
LjContig00081g0008736 Lotus japonicus
Lsat_1_v5_gn_5_1461 Lactuca sativa
Lsat_1_v5_gn_6_5940 Lactuca sativa
Lsat_1_v5_gn_7_13221 Lactuca sativa
Lsat_1_v5_gn_9_90040 Lactuca sativa
Lsat_1_v5_gn_9_90320 Lactuca sativa
Manes.03G140400 Manihot esculenta
Manes.03G140401 Manihot esculenta
Manes.03G166500 Manihot esculenta
Manes.08G070400 Manihot esculenta
Manes.15G038800 Manihot esculenta
Mapoly0066s0114 Marchantia polymorpha
MBI16_g06798_MAGBIO Magnolia biondii
MBI16_g22441_MAGBIO Magnolia biondii
MBI19_g22177_MAGBIO Magnolia biondii
MD00G1057000 Malus domestica
MD03G1183700 Malus domestica
MD03G1183800 Malus domestica
MD10G1337300 Malus domestica
MD11G1200700 Malus domestica
Medtr4g133870 Medicago truncatula
Medtr5g095650 Medicago truncatula
MELO3C024926.2 Cucumis melo
MELO3C026072.2 Cucumis melo
Migut.H01761 Erythranthe guttata
Migut.M01436 Erythranthe guttata
MSTRG.13017 Avicennia marina
Nitab4.5_0000147g0310 Nicotiana tabacum
Nitab4.5_0000461g0230 Nicotiana tabacum
Nitab4.5_0003491g0060 Nicotiana tabacum
Nitab4.5_0004646g0040 Nicotiana tabacum
Nitab4.5_0005906g0010 Nicotiana tabacum
Nitab4.5_0006886g0040 Nicotiana tabacum
Nn1g03206 Nelumbo nucifera
Oeu002775.1 Olea europaea
Oeu005488.1 Olea europaea
Oeu005963.1 Olea europaea
Os03g0752300 Oryza sativa ssp. japonica
Os07g0108800 Oryza sativa ssp. japonica
Peaxi162Scf00020g02236 Petunia axillaris
Peaxi162Scf00079g00056 Petunia axillaris
Peaxi162Scf01164g00013 Petunia axillaris
Peaxi162Scf01544g00023 Petunia axillaris
PGR004G2744 Punica granatum
PGR031G2740 Punica granatum
PGSC0003DMG400014411 Solanum tuberosum
PGSC0003DMG400022284 Solanum tuberosum
PGSC0003DMG400023600 Solanum tuberosum
Phvul.003G085800 Phaseolus vulgaris
Phvul.008G278400 Phaseolus vulgaris
Potri.001G366800 Populus trichocarpa
Potri.008G004600 Populus trichocarpa
Potri.008G004700 Populus trichocarpa
Potri.016G007200 Populus trichocarpa
Pp3c20_740 Physcomitrium patens
Prupe.4G005900 Prunus persica
Prupe.4G241900 Prunus persica
Prupe.4G242000 Prunus persica
Psat2g007800 Pisum sativum
Psat4g002480 Pisum sativum
PSO478G2123 Papaver somniferum
PSO478G3025 Papaver somniferum
PSO782G0407 Papaver somniferum
PSO782G5192 Papaver somniferum
QL05p068153 Quercus lobata
QL08p004561 Quercus lobata
QL08p004564 Quercus lobata
QL08p004568 Quercus lobata
QL08p004579 Quercus lobata
QL08p004612 Quercus lobata
RcHm_v2.0_Chr5g0000671 Rosa chinensis
RcHm_v2.0_Chr5g0053821 Rosa chinensis
RcHm_v2.0_Chr5g0053831 Rosa chinensis
Rhsim02G0090800 Rhododendron simsii
Rhsim04G0013100 Rhododendron simsii
Rhsim06G0228700 Rhododendron simsii
RhsimUnG0212300 Rhododendron simsii
Sabra08G0002200 Salix brachista
Sabra08G0002300 Salix brachista
Sabra16G0012000 Salix brachista
Sabra16G0240100 Salix brachista
SalBow8G3015 Salvia bowleyana
Sc22g0002100 Simmondsia chinensis
Sed0019808 Sechium edule
Sed0023919 Sechium edule
SEGI_15686 Sequoiadendron giganteum
SEGI_39380 Sequoiadendron giganteum
SGA_v2.0_scaffold8G04404 Striga asiatica
SMO146G0371 Selaginella moellendorffii
SMO201G0186 Selaginella moellendorffii
Solyc04g014880.4 Solanum lycopersicum
Solyc07g065450.3 Solanum lycopersicum
Solyc10g006010.3 Solanum lycopersicum
Sopen07g033660 Solanum pennellii
Sopen09g007710 Solanum pennellii
Sopen10g001970 Solanum pennellii
Sp2g05180 Schrenkiella parvula
Sp6g17550 Schrenkiella parvula
TAR629G0492 Trochodendron aralioides
THA.LOC104811658 Tarenaya hassleriana
Thecc.06G238400 Theobroma cacao
Thecc.07G015200 Theobroma cacao
Thecc.07G015300 Theobroma cacao
Thecc.07G015400 Theobroma cacao
Thecc.07G015500 Theobroma cacao
Thhalv10013902m.g Eutrema salsugineum
TPR.G5941 Trifolium pratense
TPR.G8582 Trifolium pratense
TWI38G0539 Tripterygium wilfordii
TWI39G0755 Tripterygium wilfordii
unitig_748.g7913 Utricularia gibba
vmacro09652 Vaccinium macrocarpon
vmacro15732 Vaccinium macrocarpon
vmacro22709 Vaccinium macrocarpon
VMungo0647G2213 Vigna mungo
VMungo1215G0367 Vigna mungo
Zm00001eb057500 Zea mays
Zm00001eb169870 Zea mays

User provided reference genes

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