Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p18320 Brassica napus
Aa31LG5G8290 Aethionema arabicum
Actinidia05444 Actinidia chinensis
Actinidia08421 Actinidia chinensis
Actinidia35455 Actinidia chinensis
Actinidia37327 Actinidia chinensis
Ah.08g215880 Amaranthus hybridus
AL345U10010 Arabidopsis lyrata
AL4G22660 Arabidopsis lyrata
Aqoxy2G01291 Aquilegia oxysepala
Aqoxy4G02824 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.69VPM4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BK04FV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DK98W5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VG2XB0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VNK22G Arachis hypogaea
AT2G27690 Arabidopsis thaliana
Atru.chr12.993 Acer truncatum
Atru.chr3.3321 Acer truncatum
Atru.chr8.1584 Acer truncatum
AUR62009786 Chenopodium quinoa
AUR62028566 Chenopodium quinoa
AUR62039232 Chenopodium quinoa
AUR62039233 Chenopodium quinoa
BcaB02g10103 Brassica carinata
BcaC02g10894 Brassica carinata
BolC4t23889H Brassica oleracea
BraA07t29548Z Brassica rapa
C04p23960 Brassica napus
CAN.G1039.5 Capsicum annuum
CAN.G919.16 Capsicum annuum
CANSAT54G1776 Cannabis sativa
CANSAT80G1263 Cannabis sativa
CANSAT80G2582 Cannabis sativa
CARHR120320 Cardamine hirsuta
Carub.0004s0840 Capsella rubella
Ca_01666_v3 Cicer arietinum L.
Ca_19384_v3 Cicer arietinum L.
Cc01_g09500 Coffea canephora
Cc06_g05540 Coffea canephora
CDE02G1699 Ceratophyllum demersum
CDE02G1859 Ceratophyllum demersum
CDE02G3508 Ceratophyllum demersum
CDE06G0686 Ceratophyllum demersum
CDE06G1506 Ceratophyllum demersum
CDE08G0348 Ceratophyllum demersum
Cfa010054 Carpinus fangiana
Ciclev10013407m.g Citrus clementina
Ciclev10013425m.g Citrus clementina
Ciclev10028253m.g Citrus clementina
Ciclev10028254m.g Citrus clementina
Ciclev10033768m.g Citrus clementina
CiPaw.09G011100 Carya illinoinensis
CiPaw.10G007500 Carya illinoinensis
CiPaw.13G138300 Carya illinoinensis
CiPaw.14G102100 Carya illinoinensis
ClCG01G012400 Citrullus lanatus
ClCG10G019130 Citrullus lanatus
COL.COLO4_19932 Corchorus olitorius
COL.COLO4_27236 Corchorus olitorius
COL.COLO4_29780 Corchorus olitorius
Cpa.g.sc32.129 Carica papaya
Cpa.g.sc5.48 Carica papaya
Cpa.g.sc765.2 Carica papaya
CsaV3_1G014690 Cucumis sativus L.
CsaV3_3G037130 Cucumis sativus L.
CSS0010061 Camellia sinensis var. sinensis
CSS0010258 Camellia sinensis var. sinensis
CSS0035945 Camellia sinensis var. sinensis
CSS0036771 Camellia sinensis var. sinensis
CSS0041089 Camellia sinensis var. sinensis
CSS0047063 Camellia sinensis var. sinensis
CSS0047824 Camellia sinensis var. sinensis
DCAR_013377 Daucus carota
DCAR_020764 Daucus carota
Dinv20789 Davidia involucrata
Dinv21226 Davidia involucrata
Dinv29451 Davidia involucrata
Dinv31664 Davidia involucrata
Dinv42573 Davidia involucrata
Duzib093G2088 Durio zibethinus
Duzib170G0213 Durio zibethinus
Duzib170G0853 Durio zibethinus
ECA233G2992 Erigeron canadensis
ECA248G1695 Erigeron canadensis
ECA248G2081 Erigeron canadensis
EL10Ac7g15797 Beta vulgaris
EL10Ac7g16948 Beta vulgaris
Eucgr.A01523 Eucalyptus grandis
Eucgr.B03878 Eucalyptus grandis
Eucgr.G02702 Eucalyptus grandis
Eucgr.J00477 Eucalyptus grandis
FAN03G0777 Fragaria x ananassa
FAN05G0342 Fragaria x ananassa
FAN05G1159 Fragaria x ananassa
FAN10G0092 Fragaria x ananassa
FAN11G0273 Fragaria x ananassa
FAN14G0056 Fragaria x ananassa
FAN16G2505 Fragaria x ananassa
FAN17G1071 Fragaria x ananassa
FAN21G3112 Fragaria x ananassa
FAN25G0997 Fragaria x ananassa
FAN25G1297 Fragaria x ananassa
FvH4_3g24520 Fragaria vesca
FvH4_6g18280 Fragaria vesca
Glyma.03G193500 Glycine max
Glyma.11G185700 Glycine max
Glyma.12G087200 Glycine max
Glyma.13G152202 Glycine max
Gohir.A01G207501 Gossypium hirsutum
Gohir.A04G064500 Gossypium hirsutum
Gohir.A05G082100 Gossypium hirsutum
Gohir.A08G004400 Gossypium hirsutum
Gohir.A09G094600 Gossypium hirsutum
Gohir.A09G138300 Gossypium hirsutum
Gohir.D01G197000 Gossypium hirsutum
Gohir.D04G102000 Gossypium hirsutum
Gohir.D04G102033 Gossypium hirsutum
Gohir.D05G085050 Gossypium hirsutum
Gohir.D08G014700 Gossypium hirsutum
Gohir.D09G094400 Gossypium hirsutum
Gohir.D09G136300 Gossypium hirsutum
Gorai.002G241100 Gossypium raimondii
Gorai.004G009100 Gossypium raimondii
Gorai.006G111000 Gossypium raimondii
Gorai.006G156400 Gossypium raimondii
Gorai.009G086900 Gossypium raimondii
Gorai.009G405300 Gossypium raimondii
GSVIVG01033809001 Vitis vinifera
GSVIVG01034764001 Vitis vinifera
GSVIVG01036176001 Vitis vinifera
HanXRQChr04g0094691 Helianthus annuus
HanXRQChr11g0351431 Helianthus annuus
HanXRQChr13g0397121 Helianthus annuus
Haze_11363 Corylus avellana
Haze_19579 Corylus avellana
Haze_23419 Corylus avellana
Hma1.2p1_0305F.1_g119570 Hydrangea macrophylla
HPP92_001110 Vanilla planifolia
HPP92_007820 Vanilla planifolia
HPP92_023005 Vanilla planifolia
HPP92_023006 Vanilla planifolia
Lalb_Chr03g0027991 Lupinus albus
Lalb_Chr19g0136651 Lupinus albus
Lalb_Chr25g0288521 Lupinus albus
Lj1P240T21 Lonicera japonica
Lj2C30T13 Lonicera japonica
Lj2P133T33 Lonicera japonica
Lj2P986T9 Lonicera japonica
Lj3g0005153 Lotus japonicus
Lj3g0010775 Lotus japonicus
Lsat_1_v5_gn_1_48460 Lactuca sativa
Lsat_1_v5_gn_6_40941 Lactuca sativa
Lsat_1_v5_gn_8_23721 Lactuca sativa
Manes.04G005600 Manihot esculenta
Manes.09G057101 Manihot esculenta
Manes.11G159900 Manihot esculenta
MBI01_g15444_MAGBIO Magnolia biondii
MBI17_g28663_MAGBIO Magnolia biondii
MD03G1140700 Malus domestica
MD11G1171100 Malus domestica
MD12G1022700 Malus domestica
MD14G1019500 Malus domestica
Medtr1g060550 Medicago truncatula
Medtr2g061910 Medicago truncatula
Medtr2g086040 Medicago truncatula
Medtr4g054920 Medicago truncatula
MELO3C004742.2 Cucumis melo
MELO3C009458.2 Cucumis melo
Migut.D02345 Erythranthe guttata
Migut.J00965 Erythranthe guttata
MSTRG.10362 Avicennia marina
MSTRG.12364 Avicennia marina
MSTRG.17713 Avicennia marina
MSTRG.18745 Avicennia marina
MSTRG.19246 Avicennia marina
MSTRG.21052 Avicennia marina
MSTRG.26644 Avicennia marina
MSTRG.5824 Avicennia marina
MSTRG.5825 Avicennia marina
Nitab4.5_0000794g0070 Nicotiana tabacum
Nitab4.5_0001387g0090 Nicotiana tabacum
Nitab4.5_0001901g0010 Nicotiana tabacum
Nitab4.5_0002400g0010 Nicotiana tabacum
Nitab4.5_0002910g0030 Nicotiana tabacum
Nitab4.5_0005756g0010 Nicotiana tabacum
Nitab4.5_0005756g0020 Nicotiana tabacum
Nitab4.5_0007257g0030 Nicotiana tabacum
Nitab4.5_0009702g0010 Nicotiana tabacum
Nn3g17171 Nelumbo nucifera
Nn3g18669 Nelumbo nucifera
Nn3g18965 Nelumbo nucifera
Nn5g30582 Nelumbo nucifera
Nn6g34978 Nelumbo nucifera
Nn6g35215 Nelumbo nucifera
Nn6g35401 Nelumbo nucifera
Oeu011197.1 Olea europaea
Oeu014909.1 Olea europaea
Oeu014911.1 Olea europaea
Oeu030896.1 Olea europaea
Oeu050208.1 Olea europaea
Oeu051617.1 Olea europaea
Oeu054493.1 Olea europaea
Oeu056900.1 Olea europaea
Oeu056910.1 Olea europaea
Oeu058260.1 Olea europaea
Os01g0858350 Oryza sativa ssp. japonica
Os05g0445100 Oryza sativa ssp. japonica
Os11g0151400 Oryza sativa ssp. japonica
Os12g0150200 Oryza sativa ssp. japonica
Peaxi162Scf00036g10015 Petunia axillaris
Peaxi162Scf00091g00176 Petunia axillaris
Peaxi162Scf00096g00005 Petunia axillaris
Peaxi162Scf00141g00143 Petunia axillaris
Peaxi162Scf00173g00093 Petunia axillaris
PGR004G0500 Punica granatum
PGR102G0274 Punica granatum
PGR142G2011 Punica granatum
PGSC0003DMG400007118 Solanum tuberosum
PGSC0003DMG400008884 Solanum tuberosum
PGSC0003DMG400008960 Solanum tuberosum
PGSC0003DMG400019471 Solanum tuberosum
Phvul.001G188500 Phaseolus vulgaris
Phvul.007G229700 Phaseolus vulgaris
Phvul.011G092100 Phaseolus vulgaris
Potri.004G185300 Populus trichocarpa
Potri.009G145400 Populus trichocarpa
Potri.010G236700 Populus trichocarpa
Potri.013G075600 Populus trichocarpa
Prupe.6G126400 Prunus persica
Prupe.7G114100 Prunus persica
Psat6g080640 Pisum sativum
Psat7g189120 Pisum sativum
Psat7g189160 Pisum sativum
Psat7g189240 Pisum sativum
PSO205G0001 Papaver somniferum
PSO384G2517 Papaver somniferum
PSO384G3649 Papaver somniferum
PSO425G0008 Papaver somniferum
PSO425G0045 Papaver somniferum
QL01p012973 Quercus lobata
QL07p039551 Quercus lobata
RcHm_v2.0_Chr3g0472721 Rosa chinensis
RcHm_v2.0_Chr5g0043981 Rosa chinensis
Rhsim01G0206400 Rhododendron simsii
Rhsim03G0078000 Rhododendron simsii
Rhsim13G0109300 Rhododendron simsii
Sabra04G0124900 Salix brachista
Sabra09G0112600 Salix brachista
Sabra09G0115100 Salix brachista
Sabra10G0183600 Salix brachista
Sabra13G0065100 Salix brachista
SalBow3G1947 Salvia bowleyana
SalBow6G1055 Salvia bowleyana
Sc20g0001210 Simmondsia chinensis
Sc21g0007190 Simmondsia chinensis
Sed0006105 Sechium edule
Sed0024137 Sechium edule
SGA_v2.0_scaffold13G06762 Striga asiatica
Solyc06g074420.1 Solanum lycopersicum
Solyc09g009703.1 Solanum lycopersicum
Solyc09g009707.1 Solanum lycopersicum
Solyc10g083400.1 Solanum lycopersicum
Sopen00g007980 Solanum pennellii
Sopen06g030900 Solanum pennellii
Sopen09g004470 Solanum pennellii
Sopen09g004480 Solanum pennellii
Sp4g10450 Schrenkiella parvula
TAR369G0851 Trochodendron aralioides
TAR369G0924 Trochodendron aralioides
TAR623G1311 Trochodendron aralioides
TAR624G0025 Trochodendron aralioides
TAR624G0609 Trochodendron aralioides
TAR633G0454 Trochodendron aralioides
THA.LOC104800541 Tarenaya hassleriana
THA.LOC104814792 Tarenaya hassleriana
THA.LOC104826412 Tarenaya hassleriana
Thecc.05G085600 Theobroma cacao
Thecc.09G287100 Theobroma cacao
Thecc.10G101800 Theobroma cacao
Thhalv10016556m.g Eutrema salsugineum
TPR.G23798 Trifolium pratense
TPR.G35434 Trifolium pratense
TPR.G7219 Trifolium pratense
TWI31G0109 Tripterygium wilfordii
TWI74G1329 Tripterygium wilfordii
TWI79G0110 Tripterygium wilfordii
TWI79G1064 Tripterygium wilfordii
VMungo0720G1473 Vigna mungo
VMungo1127G0406 Vigna mungo
Zm00001eb164090 Zea mays
Zm00001eb196960 Zea mays
Zm00001eb289010 Zea mays
Zm00001eb366970 Zea mays
Zm00001eb406600 Zea mays
Zm00001eb406670 Zea mays

User provided reference genes

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