Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01840 Brassica napus
A03p64840 Brassica napus
A08p06150 Brassica napus
Aa31LG6G14000 Aethionema arabicum
Aa31sc633G10 Aethionema arabicum
Actinidia22638 Actinidia chinensis
Actinidia23286 Actinidia chinensis
Actinidia29875 Actinidia chinensis
Actinidia36490 Actinidia chinensis
Actinidia36491 Actinidia chinensis
Actinidia38062 Actinidia chinensis
Ah.02g124310 Amaranthus hybridus
Ah.05g167380 Amaranthus hybridus
AL1G52870 Arabidopsis lyrata
AL7G13740 Arabidopsis lyrata
Aqoxy5G01222 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.04DKNA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.83QRJ7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.85Y548 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9CPW5C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CE0UAC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EZNQ6Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ICQG9J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IVBW5X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XI9RPA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XLF91B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZNK5XH Arachis hypogaea
AT1G45207 Arabidopsis thaliana
AT4G36970 Arabidopsis thaliana
ATR0009G012 Amborella trichopoda
Atru.chr11.2568 Acer truncatum
Atru.chr13.706_Atru.chr13.707 Acer truncatum
Atru.chr3.323 Acer truncatum
Atru.chr3.324 Acer truncatum
AUR62001925 Chenopodium quinoa
AUR62003885 Chenopodium quinoa
AUR62031368 Chenopodium quinoa
AUR62043210 Chenopodium quinoa
BcaB04g17568 Brassica carinata
BcaC07g37263 Brassica carinata
BcaNung02521 Brassica carinata
BcaNung05424 Brassica carinata
BolC1t00192H Brassica oleracea
BolC7t46636H Brassica oleracea
BolC8t47535H Brassica oleracea
BraA01t00173Z Brassica rapa
BraA03t15547Z Brassica rapa
BraA08t32615Z Brassica rapa
C01p01980 Brassica napus
C07p62200 Brassica napus
C08p06930 Brassica napus
CAN.G1030.13 Capsicum annuum
CAN.G165.16 Capsicum annuum
CAN.G588.72 Capsicum annuum
CAN.G660.10 Capsicum annuum
CAN.G74.2 Capsicum annuum
CANSAT01G1336 Cannabis sativa
CANSAT25G2991 Cannabis sativa
CARHR036350 Cardamine hirsuta
CARHR245530 Cardamine hirsuta
Carub.0001s3564 Capsella rubella
Carub.0007s0316 Capsella rubella
Ca_13287_v3 Cicer arietinum L.
Ca_22161_v3 Cicer arietinum L.
Ca_24767_v3 Cicer arietinum L.
Cc00_g32560 Coffea canephora
Cc07_g06020 Coffea canephora
Cc10_g04500 Coffea canephora
CDE04G1850 Ceratophyllum demersum
CDE06G2289 Ceratophyllum demersum
CDE08G1143 Ceratophyllum demersum
Cfa004026 Carpinus fangiana
Cfa018086 Carpinus fangiana
Ciclev10000692m.g Citrus clementina
Ciclev10025727m.g Citrus clementina
CiPaw.01G017800 Carya illinoinensis
CiPaw.02G008100 Carya illinoinensis
CiPaw.15G055500 Carya illinoinensis
CiPaw.16G042600 Carya illinoinensis
ClCG01G016840 Citrullus lanatus
ClCG05G019940 Citrullus lanatus
ClCG08G016010 Citrullus lanatus
COL.COLO4_11421 Corchorus olitorius
COL.COLO4_26522 Corchorus olitorius
Cpa.g.sc49.29 Carica papaya
Cpa.g.sc55.145 Carica papaya
CsaV3_2G026620 Cucumis sativus L.
CsaV3_4G034380 Cucumis sativus L.
CsaV3_6G043280 Cucumis sativus L.
CSS0000575 Camellia sinensis var. sinensis
CSS0008606 Camellia sinensis var. sinensis
CSS0019866 Camellia sinensis var. sinensis
DCAR_008800 Daucus carota
DCAR_010892 Daucus carota
DCAR_012780 Daucus carota
Dinv29987 Davidia involucrata
Dinv35950 Davidia involucrata
Dinv39306 Davidia involucrata
Dinv39843 Davidia involucrata
Duzib041G0280 Durio zibethinus
Duzib093G1665 Durio zibethinus
Duzib116G0100 Durio zibethinus
Duzib147G0983 Durio zibethinus
Duzib187G1500 Durio zibethinus
ECA232G3719 Erigeron canadensis
ECA233G2455 Erigeron canadensis
ECA238G1702 Erigeron canadensis
ECA246G3008 Erigeron canadensis
ECA247G1568 Erigeron canadensis
EL10Ac6g15741 Beta vulgaris
EL10As7g23741 Beta vulgaris
Eucgr.F02334 Eucalyptus grandis
Eucgr.I00921 Eucalyptus grandis
FAN15G0638 Fragaria x ananassa
FAN19G0515 Fragaria x ananassa
FAN20G2633 Fragaria x ananassa
FAN23G0714 Fragaria x ananassa
FAN24G1847 Fragaria x ananassa
FAN26G3404 Fragaria x ananassa
FAN27G2558 Fragaria x ananassa
FAN28G2223 Fragaria x ananassa
FvH4_1g16090 Fragaria vesca
FvH4_2g34300 Fragaria vesca
Glyma.01G186300 Glycine max
Glyma.03G083500 Glycine max
Glyma.05G095500 Glycine max
Glyma.06G040700 Glycine max
Glyma.11G055600 Glycine max
Glyma.14G083500 Glycine max
Glyma.17G174300 Glycine max
Glyma.17G241500 Glycine max
Gohir.A05G203300 Gossypium hirsutum
Gohir.A06G019100 Gossypium hirsutum
Gohir.A12G071500 Gossypium hirsutum
Gohir.D05G206400 Gossypium hirsutum
Gohir.D06G017500 Gossypium hirsutum
Gohir.D12G069600 Gossypium hirsutum
Gorai.008G076600 Gossypium raimondii
Gorai.009G212800 Gossypium raimondii
Gorai.010G020400 Gossypium raimondii
GSVIVG01009482001 Vitis vinifera
GSVIVG01022127001 Vitis vinifera
HanXRQChr04g0103161 Helianthus annuus
HanXRQChr09g0267531 Helianthus annuus
HanXRQChr10g0295441 Helianthus annuus
HanXRQChr12g0378851 Helianthus annuus
HanXRQChr14g0442771 Helianthus annuus
HanXRQChr15g0473681 Helianthus annuus
HanXRQChr16g0508151 Helianthus annuus
Haze_15394 Corylus avellana
Hma1.2p1_0360F.1_g135580 Hydrangea macrophylla
Hma1.2p1_1705F.1_g298400 Hydrangea macrophylla
HPP92_016389 Vanilla planifolia
HPP92_027214 Vanilla planifolia
Hund16320 Selenicereus undatus
Hund24033 Selenicereus undatus
Hund30799 Selenicereus undatus
Lalb_Chr05g0226581 Lupinus albus
Lalb_Chr09g0323201 Lupinus albus
Lalb_Chr09g0333791 Lupinus albus
Lalb_Chr14g0368621 Lupinus albus
Lalb_Chr22g0355071 Lupinus albus
Lalb_Chr24g0399281 Lupinus albus
Lj1g0019274 Lotus japonicus
Lj2g0013955 Lotus japonicus
Lj4C771T16 Lonicera japonica
Lj4g0022631 Lotus japonicus
Lj5g0008906 Lotus japonicus
Lj7C70G5 Lonicera japonica
Lsat_1_v5_gn_1_21220 Lactuca sativa
Lsat_1_v5_gn_2_84081 Lactuca sativa
Lsat_1_v5_gn_3_90681 Lactuca sativa
Lsat_1_v5_gn_4_126520 Lactuca sativa
Manes.05G174600 Manihot esculenta
Manes.12G099500 Manihot esculenta
Manes.13G124000 Manihot esculenta
Manes.18G038200 Manihot esculenta
MBI03_g13476_MAGBIO Magnolia biondii
MD00G1220400 Malus domestica
MD02G1172500 Malus domestica
MD08G1098900 Malus domestica
MD15G1081400 Malus domestica
Medtr1g019280 Medicago truncatula
Medtr5g017290 Medicago truncatula
MELO3C007561.2 Cucumis melo
MELO3C010849.2 Cucumis melo
MELO3C016759.2 Cucumis melo
Migut.H00430 Erythranthe guttata
Migut.N02715 Erythranthe guttata
MSTRG.15387 Avicennia marina
MSTRG.22258 Avicennia marina
MSTRG.2881 Avicennia marina
MSTRG.3426 Avicennia marina
Nitab4.5_0000287g0220 Nicotiana tabacum
Nitab4.5_0000604g0150 Nicotiana tabacum
Nitab4.5_0001692g0010 Nicotiana tabacum
Nitab4.5_0002263g0010 Nicotiana tabacum
Nitab4.5_0003298g0010 Nicotiana tabacum
Nitab4.5_0005942g0010 Nicotiana tabacum
Nitab4.5_0008020g0020 Nicotiana tabacum
Nitab4.5_0008512g0040 Nicotiana tabacum
Nn1g04838 Nelumbo nucifera
Nn5g30281 Nelumbo nucifera
Nn5g30283 Nelumbo nucifera
Oeu012422.2 Olea europaea
Oeu014841.1 Olea europaea
Oeu024299.1 Olea europaea
Oeu031957.1 Olea europaea
Os02g0767000 Oryza sativa ssp. japonica
Os08g0471800 Oryza sativa ssp. japonica
Os09g0456100 Oryza sativa ssp. japonica
Peaxi162Scf00010g02712 Petunia axillaris
Peaxi162Scf00450g00317 Petunia axillaris
Peaxi162Scf00458g00318 Petunia axillaris
Peaxi162Scf01691g00010 Petunia axillaris
PGR004G1326 Punica granatum
PGR031G3008 Punica granatum
PGSC0003DMG400004040 Solanum tuberosum
PGSC0003DMG400025471 Solanum tuberosum
PGSC0003DMG401008010 Solanum tuberosum
PGSC0003DMG402008010 Solanum tuberosum
Phvul.001G022700 Phaseolus vulgaris
Phvul.002G018600 Phaseolus vulgaris
Phvul.003G243700 Phaseolus vulgaris
Potri.002G125200 Populus trichocarpa
Potri.005G138500 Populus trichocarpa
Potri.007G044350 Populus trichocarpa
Potri.014G027900 Populus trichocarpa
Prupe.1G434200 Prunus persica
Prupe.7G133000 Prunus persica
Psat2g167440 Pisum sativum
Psat4g086720 Pisum sativum
Psat6g012960 Pisum sativum
PSO170G4868 Papaver somniferum
PSO210G1256 Papaver somniferum
PSO541G0213 Papaver somniferum
PSO675G8389 Papaver somniferum
QL02p004649 Quercus lobata
QL06p041304 Quercus lobata
RcHm_v2.0_Chr2g0105711 Rosa chinensis
RcHm_v2.0_Chr6g0308061 Rosa chinensis
Rhsim06G0051000 Rhododendron simsii
Rhsim07G0228000 Rhododendron simsii
Rhsim10G0117100 Rhododendron simsii
Sabra02G0098300 Salix brachista
Sabra05G0112000 Salix brachista
Sabra07G0039200 Salix brachista
Sabra14G0019000 Salix brachista
SalBow6G0651 Salvia bowleyana
Sc02g0007200 Simmondsia chinensis
Sc03g0001600 Simmondsia chinensis
Sc15g0006070 Simmondsia chinensis
Sed0001622 Sechium edule
Sed0013931 Sechium edule
Sed0019747 Sechium edule
Sed0023242 Sechium edule
SGA_v2.0_scaffold14G06995 Striga asiatica
SGA_v2.0_scaffold15G07311 Striga asiatica
SGA_v2.0_scaffold28G11779 Striga asiatica
Solyc02g064990.3 Solanum lycopersicum
Solyc02g090900.3 Solanum lycopersicum
Solyc04g078810.4 Solanum lycopersicum
Sopen02g015120 Solanum pennellii
Sopen02g035550 Solanum pennellii
Sopen04g032410 Solanum pennellii
Sp1g34030 Schrenkiella parvula
Sp7g34790 Schrenkiella parvula
TAR381G1221 Trochodendron aralioides
TAR625G0689 Trochodendron aralioides
THA.LOC104807584 Tarenaya hassleriana
THA.LOC104812570 Tarenaya hassleriana
THA.LOC104814166 Tarenaya hassleriana
Thecc.01G056600 Theobroma cacao
Thecc.08G005500 Theobroma cacao
Thhalv10011395m.g Eutrema salsugineum
Thhalv10025192m.g Eutrema salsugineum
TPR.G19071 Trifolium pratense
TPR.G30691 Trifolium pratense
TPR.G3808 Trifolium pratense
TWI36G0260 Tripterygium wilfordii
TWI53G0215 Tripterygium wilfordii
TWI56G0639 Tripterygium wilfordii
unitig_26.g9330 Utricularia gibba
unitig_26.g9331 Utricularia gibba
unitig_32.g11762 Utricularia gibba
unitig_736.g22383 Utricularia gibba
unitig_749.g13677 Utricularia gibba
unitig_899.g14665 Utricularia gibba
unitig_899.g14942 Utricularia gibba
vmacro04445 Vaccinium macrocarpon
vmacro05341 Vaccinium macrocarpon
vmacro21513 Vaccinium macrocarpon
VMungo0251G3137 Vigna mungo
VMungo0647G1146 Vigna mungo
VMungo1215G1695 Vigna mungo
Zm00001eb100720 Zea mays
Zm00001eb176670 Zea mays
Zm00001eb193590 Zea mays
Zm00001eb255980 Zea mays
Zm00001eb314840 Zea mays

User provided reference genes

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