Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p28750 Brassica napus
A06p05730 Brassica napus
A09p65730 Brassica napus
Aa31LG8G7030 Aethionema arabicum
Aa31sc17G200 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2920 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1424 Anthoceros agrestis
Actinidia05796 Actinidia chinensis
Actinidia30962 Actinidia chinensis
AL1G19280 Arabidopsis lyrata
AL3G33930 Arabidopsis lyrata
Aqoxy2G03145 Aquilegia oxysepala
Aqoxy3G02525 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.93XEYI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NN6EDM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P33UNN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P3NF1H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TXGY4M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WYVN3V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YZU4Z1 Arachis hypogaea
AT1G08845 Arabidopsis thaliana
AT3G20230 Arabidopsis thaliana
ATR0051G029 Amborella trichopoda
ATR0057G074 Amborella trichopoda
Atru.chr13.2405 Acer truncatum
Atru.chr2.601 Acer truncatum
AUR62000908 Chenopodium quinoa
AUR62005060 Chenopodium quinoa
AUR62013792 Chenopodium quinoa
AUR62023363 Chenopodium quinoa
BcaB06g26095 Brassica carinata
BcaC05g24743 Brassica carinata
BcaC05g27883 Brassica carinata
BcaC05g27885 Brassica carinata
BcaC05g27886 Brassica carinata
BcaC07g41922 Brassica carinata
BcaC09g48971 Brassica carinata
BolC5t29450H Brassica oleracea
BolC5t32634H Brassica oleracea
BolC5t33138H Brassica oleracea
BolC8t52507H Brassica oleracea
BraA05t21752Z Brassica rapa
BraA06t23784Z Brassica rapa
BraA09t41916Z Brassica rapa
C05p06920 Brassica napus
C05p44160 Brassica napus
C08p49800 Brassica napus
CAN.G1178.22 Capsicum annuum
CAN.G1273.31 Capsicum annuum
CAN.G1305.13 Capsicum annuum
CAN.G1489.2 Capsicum annuum
CAN.G203.43 Capsicum annuum
CAN.G301.2 Capsicum annuum
CAN.G339.45 Capsicum annuum
CAN.G401.8 Capsicum annuum
CAN.G538.1 Capsicum annuum
CAN.G726.30 Capsicum annuum
CAN.G756.4 Capsicum annuum
CAN.G812.3 Capsicum annuum
CANSAT25G0786 Cannabis sativa
CANSAT25G0989 Cannabis sativa
CANSAT54G1347 Cannabis sativa
CARHR008770 Cardamine hirsuta
CARHR095840 Cardamine hirsuta
Carub.0001s0820 Capsella rubella
Carub.0003s2016 Capsella rubella
Ca_14235_v3 Cicer arietinum L.
Ca_19710_v3 Cicer arietinum L.
Ca_30544_v3 Cicer arietinum L.
CBR_g12617 Chara braunii
Cc02_g25780 Coffea canephora
Cc02_g32860 Coffea canephora
CDE02G2147 Ceratophyllum demersum
CDE11G0844 Ceratophyllum demersum
CDE11G1208 Ceratophyllum demersum
Cfa006511 Carpinus fangiana
Cfa022164 Carpinus fangiana
Ciclev10002594m.g Citrus clementina
Ciclev10002753m.g Citrus clementina
Ciclev10003435m.g Citrus clementina
CiPaw.07G011900 Carya illinoinensis
CiPaw.14G015800 Carya illinoinensis
ClCG09G008340 Citrullus lanatus
ClCG11G008640 Citrullus lanatus
COL.COLO4_19323 Corchorus olitorius
COL.COLO4_27895 Corchorus olitorius
COL.COLO4_36074 Corchorus olitorius
Cpa.g.sc504.4 Carica papaya
Cpa.g.sc66.18 Carica papaya
CsaV3_2G004560 Cucumis sativus L.
CsaV3_3G010320 Cucumis sativus L.
CSS0007709 Camellia sinensis var. sinensis
CSS0023606 Camellia sinensis var. sinensis
CSS0023690 Camellia sinensis var. sinensis
CSS0024655 Camellia sinensis var. sinensis
CSS0033334 Camellia sinensis var. sinensis
CSS0036212 Camellia sinensis var. sinensis
CSS0040780 Camellia sinensis var. sinensis
CSS0049918 Camellia sinensis var. sinensis
DCAR_003765 Daucus carota
DCAR_015024 Daucus carota
DCAR_029532 Daucus carota
Dinv01285 Davidia involucrata
Dinv43579 Davidia involucrata
Dinv44006 Davidia involucrata
Duzib106G0319 Durio zibethinus
Duzib106G0812 Durio zibethinus
Duzib106G1465 Durio zibethinus
Duzib268G0624 Durio zibethinus
ECA234G2978 Erigeron canadensis
ECA247G1323 Erigeron canadensis
ECA248G0398 Erigeron canadensis
EL10Ac1g00711 Beta vulgaris
EL10Ac4g09264 Beta vulgaris
Eucgr.B01772 Eucalyptus grandis
Eucgr.D01469 Eucalyptus grandis
Eucgr.F02580 Eucalyptus grandis
Eucgr.L00067 Eucalyptus grandis
Eucgr.L00075 Eucalyptus grandis
Eucgr.L00161 Eucalyptus grandis
FAN01G2690 Fragaria x ananassa
FAN03G2882 Fragaria x ananassa
FAN04G1265 Fragaria x ananassa
FAN05G1509 Fragaria x ananassa
FAN05G5164 Fragaria x ananassa
FAN06G3999 Fragaria x ananassa
FAN08G1364 Fragaria x ananassa
FAN09G2939 Fragaria x ananassa
FAN09G4132 Fragaria x ananassa
FAN10G0932 Fragaria x ananassa
FAN10G2446 Fragaria x ananassa
FAN11G3617 Fragaria x ananassa
FAN13G1630 Fragaria x ananassa
FAN14G1209 Fragaria x ananassa
FAN18G1582 Fragaria x ananassa
FAN19G1559 Fragaria x ananassa
FvH4_5g32310 Fragaria vesca
FvH4_6g04770 Fragaria vesca
FvH4_7g08610 Fragaria vesca
Glyma.04G122100 Glycine max
Glyma.06G309500 Glycine max
Glyma.08G238300 Glycine max
Glyma.12G000800 Glycine max
Gohir.A03G104100 Gossypium hirsutum
Gohir.A07G092800 Gossypium hirsutum
Gohir.A08G116200 Gossypium hirsutum
Gohir.A08G206000 Gossypium hirsutum
Gohir.A13G100100 Gossypium hirsutum
Gohir.D02G102566 Gossypium hirsutum
Gohir.D02G129400 Gossypium hirsutum
Gohir.D03G140701 Gossypium hirsutum
Gohir.D04G087650 Gossypium hirsutum
Gohir.D08G137100 Gossypium hirsutum
Gohir.D10G011901 Gossypium hirsutum
Gohir.D13G075800 Gossypium hirsutum
Gohir.D13G103500 Gossypium hirsutum
Gorai.003G147600 Gossypium raimondii
Gorai.004G140300 Gossypium raimondii
Gorai.005G145200 Gossypium raimondii
Gorai.012G097700 Gossypium raimondii
Gorai.013G116100 Gossypium raimondii
GSVIVG01021982001 Vitis vinifera
GSVIVG01026787001 Vitis vinifera
HanXRQChr02g0040461 Helianthus annuus
HanXRQChr09g0250321 Helianthus annuus
HanXRQChr11g0344071 Helianthus annuus
HanXRQChr12g0381531 Helianthus annuus
Haze_02918 Corylus avellana
Haze_04275 Corylus avellana
Hma1.2p1_0332F.1_g128030 Hydrangea macrophylla
Hma1.2p1_1440F.1_g283560 Hydrangea macrophylla
HPP92_012436 Vanilla planifolia
HPP92_012532 Vanilla planifolia
HPP92_025676 Vanilla planifolia
Hund21670 Selenicereus undatus
Hund28481 Selenicereus undatus
Lalb_Chr01g0000041 Lupinus albus
Lalb_Chr15g0079181 Lupinus albus
Lalb_Chr18g0048101 Lupinus albus
Lj3g0019554 Lotus japonicus
Lj3g0023237 Lotus japonicus
Lj4g0005316 Lotus japonicus
Lj7C484T1 Lonicera japonica
Lj9P548T42 Lonicera japonica
Lsat_1_v5_gn_0_4920 Lactuca sativa
Lsat_1_v5_gn_3_3420 Lactuca sativa
Manes.02G195100 Manihot esculenta
Manes.14G142600 Manihot esculenta
Manes.14G143216 Manihot esculenta
Mapoly0056s0039 Marchantia polymorpha
Mapoly0085s0073 Marchantia polymorpha
MBI05_g34023_MAGBIO Magnolia biondii
MBI05_g40672_MAGBIO Magnolia biondii
MD04G1213500 Malus domestica
MD07G1087000 Malus domestica
MD12G1228600 Malus domestica
MD15G1410900 Malus domestica
Medtr3g012540 Medicago truncatula
Medtr4g032660 Medicago truncatula
MELO3C004335.2 Cucumis melo
MELO3C006255.2 Cucumis melo
Migut.B01475 Erythranthe guttata
Migut.L01517 Erythranthe guttata
MSTRG.19495 Avicennia marina
MSTRG.20655 Avicennia marina
Nitab4.5_0000083g0080 Nicotiana tabacum
Nitab4.5_0001537g0040 Nicotiana tabacum
Nitab4.5_0001895g0060 Nicotiana tabacum
Nitab4.5_0008210g0060 Nicotiana tabacum
Nn1g00638 Nelumbo nucifera
Nn4g26063 Nelumbo nucifera
Oeu002895.2 Olea europaea
Oeu026643.1 Olea europaea
Oeu038689.1 Olea europaea
Oeu054837.1 Olea europaea
Os02g0689700 Oryza sativa ssp. japonica
Os10g0559900 Oryza sativa ssp. japonica
Peaxi162Scf00084g01014 Petunia axillaris
Peaxi162Scf00745g00320 Petunia axillaris
PGR042G3729 Punica granatum
PGR102G1448 Punica granatum
PGSC0003DMG400001680 Solanum tuberosum
PGSC0003DMG400010517 Solanum tuberosum
PGSC0003DMG400018627 Solanum tuberosum
Phvul.005G016700 Phaseolus vulgaris
Phvul.006G019000 Phaseolus vulgaris
Phvul.011G002800 Phaseolus vulgaris
Potri.013G029300 Populus trichocarpa
Potri.013G108700 Populus trichocarpa
Potri.019G081000 Populus trichocarpa
Pp3c14_4110 Physcomitrium patens
Pp3c5_10680 Physcomitrium patens
Prupe.1G551700 Prunus persica
Prupe.2G113900 Prunus persica
Prupe.6G333700 Prunus persica
Psat5g223440 Pisum sativum
Psat7g226560 Pisum sativum
PSO063G7249 Papaver somniferum
PSO210G3774 Papaver somniferum
PSO447G0116 Papaver somniferum
PSO782G2452 Papaver somniferum
QL02p102113 Quercus lobata
QL02p102636 Quercus lobata
QL04p025810 Quercus lobata
RcHm_v2.0_Chr1g0343581 Rosa chinensis
RcHm_v2.0_Chr3g0453221 Rosa chinensis
RcHm_v2.0_Chr7g0228601 Rosa chinensis
Rhsim01G0144700 Rhododendron simsii
Rhsim07G0177200 Rhododendron simsii
Sabra13G0029600 Salix brachista
Sabra13G0094000 Salix brachista
Sabra19G0091800 Salix brachista
Sabra19G0091900 Salix brachista
SalBow1G4714 Salvia bowleyana
SalBow5G3716 Salvia bowleyana
Sc16g0008240 Simmondsia chinensis
Sc26g0001810 Simmondsia chinensis
Sed0013394 Sechium edule
Sed0018739 Sechium edule
Sed0025058 Sechium edule
SEGI_04328 Sequoiadendron giganteum
SEGI_36243 Sequoiadendron giganteum
SGA_v2.0_scaffold95G28729 Striga asiatica
SHI18251 Sapria himalayana
SMO137G0133 Selaginella moellendorffii
SMO358G0124 Selaginella moellendorffii
SMO358G0373 Selaginella moellendorffii
Solyc01g088460.3 Solanum lycopersicum
Solyc01g088470.3 Solanum lycopersicum
Solyc01g111810.3 Solanum lycopersicum
Solyc04g051020.2 Solanum lycopersicum
Solyc04g051030.1 Solanum lycopersicum
Solyc04g056530.2 Solanum lycopersicum
Sopen01g035330 Solanum pennellii
Sopen01g053850 Solanum pennellii
Sopen04g022320 Solanum pennellii
Sopen04g025460 Solanum pennellii
Sp1g07490 Schrenkiella parvula
Sp3g18250 Schrenkiella parvula
TAR362G1126 Trochodendron aralioides
TAR636G0807 Trochodendron aralioides
THA.LOC104799802 Tarenaya hassleriana
THA.LOC104808239 Tarenaya hassleriana
Thecc.02G332200 Theobroma cacao
Thecc.05G250700 Theobroma cacao
Thecc.10G001800 Theobroma cacao
Thhalv10001765m.g Eutrema salsugineum
Thhalv10008888m.g Eutrema salsugineum
Thhalv10021597m.g Eutrema salsugineum
TPR.G18593 Trifolium pratense
TPR.G34146 Trifolium pratense
TWI56G0887 Tripterygium wilfordii
TWI59G0728 Tripterygium wilfordii
unitig_26.g8866 Utricularia gibba
unitig_699.g19292 Utricularia gibba
vmacro05055 Vaccinium macrocarpon
vmacro21092 Vaccinium macrocarpon
VMungo1080G1502 Vigna mungo
VMungo1127G1943 Vigna mungo
Zm00001eb023240 Zea mays
Zm00001eb187680 Zea mays
Zm00001eb251090 Zea mays

User provided reference genes

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