Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41530 Brassica napus
A03p02010 Brassica napus
A03p36710 Brassica napus
A03p38740 Brassica napus
A05p17870 Brassica napus
A06p00750 Brassica napus
Aa31LG11G5730 Aethionema arabicum
Aa31LG3G3580 Aethionema arabicum
Actinidia03287 Actinidia chinensis
Actinidia21837 Actinidia chinensis
Actinidia24427 Actinidia chinensis
AL1G62550 Arabidopsis lyrata
AL3G22180 Arabidopsis lyrata
AL3G26620 Arabidopsis lyrata
AL6G14670 Arabidopsis lyrata
Aqoxy2G00649 Aquilegia oxysepala
Aqoxy7G04183 Aquilegia oxysepala
Aqoxy7G04184 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CZ3KL5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F2KJAJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L3JBZI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V9WYF3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z5SFH5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z6NG0Q Arachis hypogaea
AT1G53840 Arabidopsis thaliana
AT3G10710 Arabidopsis thaliana
AT3G14300 Arabidopsis thaliana
AT5G04960 Arabidopsis thaliana
ATR0099G059 Amborella trichopoda
ATR0099G099 Amborella trichopoda
Atru.chr12.1122 Acer truncatum
Atru.chr12.1124 Acer truncatum
BcaB01g05931 Brassica carinata
BcaB02g10885 Brassica carinata
BcaB04g18604 Brassica carinata
BcaB04g18836 Brassica carinata
BcaB04g21183 Brassica carinata
BcaB07g33288 Brassica carinata
BcaC01g03939 Brassica carinata
BcaC01g04168 Brassica carinata
BcaC08g43560 Brassica carinata
BcaC08g44138 Brassica carinata
BcaNung04441 Brassica carinata
BolC1t05363H Brassica oleracea
BolC1t05366H Brassica oleracea
BolC3t12787H Brassica oleracea
BolC3t16704H Brassica oleracea
BolC3t16954H Brassica oleracea
BolC6t36033H Brassica oleracea
BolC6t36710H Brassica oleracea
BraA01t04227Z Brassica rapa
BraA03t09570Z Brassica rapa
BraA03t12834Z Brassica rapa
BraA03t13022Z Brassica rapa
BraA05t20677Z Brassica rapa
BraA06t23309Z Brassica rapa
C03p02360 Brassica napus
C03p44340 Brassica napus
C03p46880 Brassica napus
C06p09610 Brassica napus
C06p15380 Brassica napus
CAN.G351.22 Capsicum annuum
CAN.G674.14 Capsicum annuum
CAN.G790.58 Capsicum annuum
CAN.G809.33 Capsicum annuum
CANSAT56G2197 Cannabis sativa
CARHR044170 Cardamine hirsuta
CARHR085290 Cardamine hirsuta
CARHR089490 Cardamine hirsuta
CARHR208300 Cardamine hirsuta
Carub.0001s4312 Capsella rubella
Carub.0003s0994 Capsella rubella
Carub.0003s1400 Capsella rubella
Carub.0006s0390 Capsella rubella
Ca_14178_v3 Cicer arietinum L.
Ca_23446_v3 Cicer arietinum L.
Ca_24109_v3 Cicer arietinum L.
Cc04_g00690 Coffea canephora
Cc04_g00700 Coffea canephora
Cc11_g00160 Coffea canephora
Cfa010433 Carpinus fangiana
Ciclev10003818m.g Citrus clementina
Ciclev10025232m.g Citrus clementina
CiPaw.01G211500 Carya illinoinensis
CiPaw.02G131000 Carya illinoinensis
CiPaw.13G048100 Carya illinoinensis
CiPaw.16G103600 Carya illinoinensis
ClCG03G006220 Citrullus lanatus
COL.COLO4_00323 Corchorus olitorius
COL.COLO4_06877 Corchorus olitorius
COL.COLO4_21192 Corchorus olitorius
COL.COLO4_30864 Corchorus olitorius
COL.COLO4_30869 Corchorus olitorius
Cpa.g.sc25.193 Carica papaya
Cpa.g.sc33.138 Carica papaya
CsaV3_1G037280 Cucumis sativus L.
CsaV3_3G031020 Cucumis sativus L.
CSS0007314 Camellia sinensis var. sinensis
CSS0037334 Camellia sinensis var. sinensis
CSS0042964 Camellia sinensis var. sinensis
DCAR_002138 Daucus carota
DCAR_022649 Daucus carota
DCAR_028535 Daucus carota
Dinv20383 Davidia involucrata
Dinv25498 Davidia involucrata
Duzib168G1886 Durio zibethinus
Duzib235G0550 Durio zibethinus
ECA234G0822 Erigeron canadensis
ECA246G2011 Erigeron canadensis
FAN01G0993 Fragaria x ananassa
FAN02G4144 Fragaria x ananassa
FAN03G1249 Fragaria x ananassa
FAN05G2733 Fragaria x ananassa
FAN06G2248 Fragaria x ananassa
FAN06G4005 Fragaria x ananassa
FAN09G4552 Fragaria x ananassa
FAN10G4052 Fragaria x ananassa
FAN14G0632 Fragaria x ananassa
FAN14G2322 Fragaria x ananassa
FvH4_6g35820 Fragaria vesca
FvH4_7g04230 Fragaria vesca
FvH4_7g04920 Fragaria vesca
Glyma.06G314100 Glycine max
Glyma.07G045967 Glycine max
Glyma.13G186100 Glycine max
Glyma.15G223800 Glycine max
Glyma.16G014000 Glycine max
Gohir.A05G036900 Gossypium hirsutum
Gohir.A05G141600 Gossypium hirsutum
Gohir.A06G143700 Gossypium hirsutum
Gohir.A06G175600 Gossypium hirsutum
Gohir.D05G143900 Gossypium hirsutum
Gohir.D06G148700 Gossypium hirsutum
Gohir.D06G185300 Gossypium hirsutum
Gorai.009G038900 Gossypium raimondii
Gorai.009G147800 Gossypium raimondii
Gorai.010G173200 Gossypium raimondii
Gorai.010G216700 Gossypium raimondii
GSVIVG01016667001 Vitis vinifera
GSVIVG01027356001 Vitis vinifera
HanXRQChr03g0063001 Helianthus annuus
HanXRQChr07g0189571 Helianthus annuus
HanXRQChr10g0311761 Helianthus annuus
Haze_03387 Corylus avellana
Haze_16136 Corylus avellana
Haze_19105 Corylus avellana
Haze_19106 Corylus avellana
Hma1.2p1_0090F.1_g045840 Hydrangea macrophylla
Hma1.2p1_0229F.1_g097090 Hydrangea macrophylla
Hma1.2p1_0233F.1_g098020 Hydrangea macrophylla
HPP92_004346 Vanilla planifolia
HPP92_004353 Vanilla planifolia
HPP92_005728 Vanilla planifolia
HPP92_005790 Vanilla planifolia
HPP92_005797 Vanilla planifolia
HPP92_009421 Vanilla planifolia
HPP92_028257 Vanilla planifolia
Lalb_Chr01g0007571 Lupinus albus
Lalb_Chr03g0032431 Lupinus albus
Lalb_Chr04g0253941 Lupinus albus
Lalb_Chr17g0343221 Lupinus albus
Lj3g0001559 Lotus japonicus
Lj3g0005821 Lotus japonicus
Lj3g0026078 Lotus japonicus
Lj5C29T4 Lonicera japonica
Lj7A490T62 Lonicera japonica
Lj8A324G110 Lonicera japonica
Lj9C538G10 Lonicera japonica
Lju2073A0G61 Lonicera japonica
Lsat_1_v5_gn_0_46160 Lactuca sativa
Lsat_1_v5_gn_4_92341 Lactuca sativa
Lsat_1_v5_gn_5_137800 Lactuca sativa
Lsat_1_v5_gn_6_111320 Lactuca sativa
Lsat_1_v5_gn_6_111381 Lactuca sativa
Manes.03G057000 Manihot esculenta
Manes.07G084300 Manihot esculenta
Manes.11G012600 Manihot esculenta
MBI13_g01659_MAGBIO Magnolia biondii
MBI13_g01661_MAGBIO Magnolia biondii
MD02G1266400 Malus domestica
MD07G1053300 Malus domestica
MD09G1172900 Malus domestica
MD17G1154400 Malus domestica
Medtr3g010780 Medicago truncatula
Medtr8g023150 Medicago truncatula
Medtr8g042900 Medicago truncatula
MELO3C002815.2 Cucumis melo
MELO3C022701.2 Cucumis melo
Migut.D00910 Erythranthe guttata
Migut.E00678 Erythranthe guttata
Migut.F00428 Erythranthe guttata
Migut.F00429 Erythranthe guttata
Migut.F01169 Erythranthe guttata
Migut.I01132 Erythranthe guttata
Migut.J00874 Erythranthe guttata
Migut.J01233 Erythranthe guttata
MSTRG.10910 Avicennia marina
Nitab4.5_0000632g0060 Nicotiana tabacum
Nitab4.5_0000632g0080 Nicotiana tabacum
Nitab4.5_0001272g0020 Nicotiana tabacum
Nitab4.5_0003902g0060 Nicotiana tabacum
Nitab4.5_0003902g0070 Nicotiana tabacum
Nitab4.5_0008337g0040 Nicotiana tabacum
Nitab4.5_0010687g0010 Nicotiana tabacum
Nitab4.5_0021126g0010 Nicotiana tabacum
Nn6g35732 Nelumbo nucifera
Oeu004768.1 Olea europaea
Oeu019508.1 Olea europaea
Oeu039214.1 Olea europaea
Oeu039216.1 Olea europaea
Oeu053422.1 Olea europaea
Oeu053425.1 Olea europaea
Peaxi162Scf00036g00192 Petunia axillaris
Peaxi162Scf00036g00193 Petunia axillaris
Peaxi162Scf00036g02020 Petunia axillaris
Peaxi162Scf00363g00522 Petunia axillaris
PGR044G2443 Punica granatum
PGR102G1887 Punica granatum
PGR119G0854 Punica granatum
PGR142G0125 Punica granatum
PGR142G1428 Punica granatum
PGSC0003DMG400001193 Solanum tuberosum
PGSC0003DMG400009177 Solanum tuberosum
PGSC0003DMG400043616 Solanum tuberosum
Phvul.005G012000 Phaseolus vulgaris
Phvul.010G123132 Phaseolus vulgaris
Phvul.011G189000 Phaseolus vulgaris
Potri.001G162700 Populus trichocarpa
Potri.003G072700 Populus trichocarpa
Potri.006G134800 Populus trichocarpa
Potri.008G011200 Populus trichocarpa
Potri.010G247600 Populus trichocarpa
Prupe.2G058300 Prunus persica
Psat4g143520 Pisum sativum
Psat4g165240 Pisum sativum
Psat5g226960 Pisum sativum
PSO135G1004 Papaver somniferum
PSO724G0370 Papaver somniferum
QL04p050835 Quercus lobata
QL05p001219 Quercus lobata
QL11p008791 Quercus lobata
QL93p0272_0013 Quercus lobata
RcHm_v2.0_Chr1g0331001 Rosa chinensis
RcHm_v2.0_Chr2g0147861 Rosa chinensis
Rhsim08G0244700 Rhododendron simsii
Sabra01G0130000 Salix brachista
Sabra03G0043500 Salix brachista
Sabra08G0006900 Salix brachista
Sabra10G0193000 Salix brachista
SalBow4G2127 Salvia bowleyana
SalBow4G3325 Salvia bowleyana
SalBow6G2640 Salvia bowleyana
SalBow6G5799 Salvia bowleyana
SalBow7G0201 Salvia bowleyana
SalBow7G4620 Salvia bowleyana
Sc10g0008020 Simmondsia chinensis
Sed0000177 Sechium edule
Sed0004119 Sechium edule
Sed0014519 Sechium edule
Sed0020004 Sechium edule
SGA_v2.0_scaffold118G32469 Striga asiatica
SGA_v2.0_scaffold4G02096 Striga asiatica
SGA_v2.0_scaffold71G23924 Striga asiatica
SHI25228 Sapria himalayana
Solyc02g014300.2 Solanum lycopersicum
Solyc02g081990.3 Solanum lycopersicum
Solyc03g123620.4 Solanum lycopersicum
Sopen02g003430 Solanum pennellii
Sopen02g026620 Solanum pennellii
Sopen03g041390 Solanum pennellii
Sp1g40330 Schrenkiella parvula
Sp3g09030 Schrenkiella parvula
Sp3g12590 Schrenkiella parvula
Sp6g37840 Schrenkiella parvula
TAR624G0531 Trochodendron aralioides
TAR624G0901 Trochodendron aralioides
TAR626G1978 Trochodendron aralioides
THA.LOC104815596 Tarenaya hassleriana
THA.LOC104816487 Tarenaya hassleriana
THA.LOC104816488 Tarenaya hassleriana
THA.LOC104826951 Tarenaya hassleriana
Thecc.06G130200 Theobroma cacao
Thecc.09G068800 Theobroma cacao
Thecc.10G162800 Theobroma cacao
Thhalv10011342m.g Eutrema salsugineum
Thhalv10013108m.g Eutrema salsugineum
Thhalv10020407m.g Eutrema salsugineum
Thhalv10022003m.g Eutrema salsugineum
TPR.G25011 Trifolium pratense
TPR.G5117 Trifolium pratense
TPR.G8720 Trifolium pratense
TWI23G0515 Tripterygium wilfordii
TWI59G0275 Tripterygium wilfordii
TWI63G1791 Tripterygium wilfordii
unitig_26.g8913 Utricularia gibba
unitig_749.g14031 Utricularia gibba
unitig_749.g14032 Utricularia gibba
vmacro15088 Vaccinium macrocarpon
vmacro18768 Vaccinium macrocarpon
VMungo0331G1482 Vigna mungo
VMungo1080G1519 Vigna mungo
VMungo1127G0253 Vigna mungo

User provided reference genes

Program Settings