Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p07940 Brassica napus
A03p12390 Brassica napus
A06p26920 Brassica napus
A10p16050 Brassica napus
Aa31LG3G13970 Aethionema arabicum
Aa31LG4G15020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1411 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2689 Anthoceros agrestis
Actinidia07094 Actinidia chinensis
Actinidia07095 Actinidia chinensis
Actinidia17979 Actinidia chinensis
Actinidia26117 Actinidia chinensis
Actinidia27681 Actinidia chinensis
Actinidia37275 Actinidia chinensis
Actinidia37276 Actinidia chinensis
Ah.01g017800 Amaranthus hybridus
Ah.15g096450 Amaranthus hybridus
AL5G24480 Arabidopsis lyrata
AL8G34240 Arabidopsis lyrata
Aqoxy2G01922 Aquilegia oxysepala
Aqoxy5G00936 Aquilegia oxysepala
Aqoxy6G03060 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0ZB6G2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1Q8FTJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2TRP4R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.84LB96 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A2Z0UC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AMCT3P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CU0UJG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4N0FV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.STDR6Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TRA7C7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZC14HK Arachis hypogaea
AT3G45780 Arabidopsis thaliana
AT5G58140 Arabidopsis thaliana
ATR0594G160 Amborella trichopoda
ATR0605G124 Amborella trichopoda
Atru.chr3.3756 Acer truncatum
Atru.chr3.3757 Acer truncatum
Atru.chr5.3595 Acer truncatum
Atru.chr5.3609 Acer truncatum
AUR62001863 Chenopodium quinoa
AUR62009661 Chenopodium quinoa
AUR62010219 Chenopodium quinoa
AUR62013215 Chenopodium quinoa
BcaB01g04477 Brassica carinata
BcaB01g04552 Brassica carinata
BcaB02g10736 Brassica carinata
BcaB08g36166 Brassica carinata
BcaC01g02273 Brassica carinata
BcaC03g14119 Brassica carinata
BcaC04g19904 Brassica carinata
BolC2t07470H Brassica oleracea
BolC3t13897H Brassica oleracea
BolC3t18995H Brassica oleracea
BolC9t57857H Brassica oleracea
BraA02t05867Z Brassica rapa
BraA03t10551Z Brassica rapa
BraA06t25631Z Brassica rapa
BraA10t43624Z Brassica rapa
C02p13580 Brassica napus
C03p14540 Brassica napus
C03p67140 Brassica napus
C09p50040 Brassica napus
CAN.G134.159 Capsicum annuum
CAN.G84.15 Capsicum annuum
CANSAT25G2366 Cannabis sativa
CANSAT54G0718 Cannabis sativa
CARHR149890 Cardamine hirsuta
CARHR271950 Cardamine hirsuta
Carub.0005s1164 Capsella rubella
Carub.0008s1869 Capsella rubella
Ca_01365_v3 Cicer arietinum L.
Ca_19218_v3 Cicer arietinum L.
Ca_22540_v3 Cicer arietinum L.
CBR_g44329 Chara braunii
CBR_g44331 Chara braunii
CBR_g44332 Chara braunii
Cc01_g11930 Coffea canephora
Cc02_g31790 Coffea canephora
CDE04G0929 Ceratophyllum demersum
CDE04G1795 Ceratophyllum demersum
CDE04G2163 Ceratophyllum demersum
CDE07G0459 Ceratophyllum demersum
CDE08G0874 Ceratophyllum demersum
Cfa004937 Carpinus fangiana
Ciclev10027740m.g Citrus clementina
Ciclev10027745m.g Citrus clementina
CiPaw.05G096000 Carya illinoinensis
CiPaw.06G112900 Carya illinoinensis
CiPaw.13G103600 Carya illinoinensis
CiPaw.14G075000 Carya illinoinensis
ClCG02G003140 Citrullus lanatus
ClCG02G010700 Citrullus lanatus
ClCG02G020700 Citrullus lanatus
COL.COLO4_10150 Corchorus olitorius
COL.COLO4_18401 Corchorus olitorius
Cpa.g.sc139.19 Carica papaya
Cpa.g.sc232.11 Carica papaya
Cpa.g.sc906.2 Carica papaya
Cre03.g199000 Chlamydomonas reinhardtii
CsaV3_6G009940 Cucumis sativus L.
CsaV3_6G021920 Cucumis sativus L.
CsaV3_7G002270 Cucumis sativus L.
CSS0004786 Camellia sinensis var. sinensis
CSS0034985 Camellia sinensis var. sinensis
DCAR_006022 Daucus carota
DCAR_015577 Daucus carota
DCAR_025318 Daucus carota
DCAR_025319 Daucus carota
DCAR_025320 Daucus carota
DCAR_029730 Daucus carota
Dinv06341 Davidia involucrata
Dinv27214 Davidia involucrata
Dinv38209 Davidia involucrata
Duzib052G1028 Durio zibethinus
Duzib168G1553 Durio zibethinus
Duzib248G1315 Durio zibethinus
ECA246G5312 Erigeron canadensis
ECA248G2220 Erigeron canadensis
EL10Ac7g15928 Beta vulgaris
EL10Ac9g21572 Beta vulgaris
Eucgr.I01551 Eucalyptus grandis
Eucgr.J02109 Eucalyptus grandis
FAN11G2425 Fragaria x ananassa
FAN15G0312 Fragaria x ananassa
FAN16G1392 Fragaria x ananassa
FAN21G3324 Fragaria x ananassa
FAN24G0554 Fragaria x ananassa
FAN27G1336 Fragaria x ananassa
FAN27G2396 Fragaria x ananassa
FvH4_2g17220 Fragaria vesca
FvH4_3g34270 Fragaria vesca
Glyma.08G264900 Glycine max
Glyma.12G074100 Glycine max
Glyma.13G330400 Glycine max
Glyma.15G043600 Glycine max
Glyma.16G096600 Glycine max
Gohir.A03G035900 Gossypium hirsutum
Gohir.A05G099800 Gossypium hirsutum
Gohir.A12G012000 Gossypium hirsutum
Gohir.A13G063700 Gossypium hirsutum
Gohir.D03G132400 Gossypium hirsutum
Gohir.D11G334800 Gossypium hirsutum
Gohir.D12G012400 Gossypium hirsutum
Gohir.D13G058200 Gossypium hirsutum
Gorai.003G139300 Gossypium raimondii
Gorai.008G012600 Gossypium raimondii
Gorai.013G065600 Gossypium raimondii
GSVIVG01023842001 Vitis vinifera
GSVIVG01025082001 Vitis vinifera
HanXRQChr04g0103261 Helianthus annuus
HanXRQChr11g0323781 Helianthus annuus
HanXRQChr16g0530481 Helianthus annuus
Haze_02475 Corylus avellana
Haze_23974 Corylus avellana
Hma1.2p1_0746F.1_g212200 Hydrangea macrophylla
Hma1.2p1_2050F.1_g312530 Hydrangea macrophylla
HPP92_017801 Vanilla planifolia
HPP92_017945 Vanilla planifolia
Hund00105 Selenicereus undatus
Hund18952 Selenicereus undatus
Lalb_Chr05g0229041 Lupinus albus
Lalb_Chr24g0394331 Lupinus albus
Lj1A179T63 Lonicera japonica
Lj3g0007160 Lotus japonicus
Lj3g0012620 Lotus japonicus
Lj4g0007937 Lotus japonicus
Lj7C488G3 Lonicera japonica
Lsat_1_v5_gn_5_166280 Lactuca sativa
Lsat_1_v5_gn_5_40001 Lactuca sativa
Lsat_1_v5_gn_6_67061 Lactuca sativa
Manes.03G096100 Manihot esculenta
Manes.11G138200 Manihot esculenta
Mapoly0081s0003 Marchantia polymorpha
Mapoly0133s0008 Marchantia polymorpha
MBI04_g23903_MAGBIO Magnolia biondii
MBI04_g44703_MAGBIO Magnolia biondii
MBI05_g14946_MAGBIO Magnolia biondii
MBI14_g14548_MAGBIO Magnolia biondii
MBI17_g17635_MAGBIO Magnolia biondii
MBI18_g38720_MAGBIO Magnolia biondii
MCO08G274 Micromonas commoda
MD05G1145700 Malus domestica
MD10G1145100 Malus domestica
MD11G1119700 Malus domestica
Medtr2g095980 Medicago truncatula
Medtr4g061610 Medicago truncatula
Medtr8g070530 Medicago truncatula
MELO3C013476.2 Cucumis melo
MELO3C024168.2 Cucumis melo
MELO3C025720.2 Cucumis melo
Migut.N02640 Erythranthe guttata
MSTRG.12623 Avicennia marina
MSTRG.28029 Avicennia marina
Nitab4.5_0002361g0050 Nicotiana tabacum
Nitab4.5_0004015g0050 Nicotiana tabacum
Nitab4.5_0004015g0060 Nicotiana tabacum
Nitab4.5_0005441g0020 Nicotiana tabacum
Nitab4.5_0008740g0010 Nicotiana tabacum
Nn2g12937 Nelumbo nucifera
Nn3g18011 Nelumbo nucifera
Nn4g24136 Nelumbo nucifera
Nn6g31558 Nelumbo nucifera
Oeu002654.1 Olea europaea
Oeu045057.4 Olea europaea
Os04g0304200 Oryza sativa ssp. japonica
Os11g0102200 Oryza sativa ssp. japonica
Os12g0101800 Oryza sativa ssp. japonica
Peaxi162Scf00616g00630 Petunia axillaris
Peaxi162Scf01049g00047 Petunia axillaris
PGR119G2541 Punica granatum
PGR142G1683 Punica granatum
PGSC0003DMG400025361 Solanum tuberosum
PGSC0003DMG401022475 Solanum tuberosum
Phvul.003G274800 Phaseolus vulgaris
Phvul.011G070300 Phaseolus vulgaris
Phvul.L001848 Phaseolus vulgaris
Potri.001G342000 Populus trichocarpa
Potri.004G209700 Populus trichocarpa
Potri.009G170550 Populus trichocarpa
Potri.009G170640 Populus trichocarpa
Pp3c14_10390 Physcomitrium patens
Pp3c18_1980 Physcomitrium patens
Pp3c19_10230 Physcomitrium patens
Pp3c1_23790 Physcomitrium patens
Pp3c21_21410 Physcomitrium patens
Pp3c2_10380 Physcomitrium patens
Pp3c7_12190 Physcomitrium patens
Prupe.6G089800 Prunus persica
Prupe.8G183500 Prunus persica
Psat4g111600 Pisum sativum
Psat5g281640 Pisum sativum
Psat7g221520 Pisum sativum
PSO017G3974 Papaver somniferum
PSO170G3261 Papaver somniferum
PSO339G0348 Papaver somniferum
PSO384G1290 Papaver somniferum
QL01p035414 Quercus lobata
QL11p057050 Quercus lobata
QL93p0185_0007 Quercus lobata
RcHm_v2.0_Chr3g0493181 Rosa chinensis
RcHm_v2.0_Chr5g0061821 Rosa chinensis
RcHm_v2.0_Chr6g0281701 Rosa chinensis
Rhsim05G0000100 Rhododendron simsii
Rhsim13G0089900 Rhododendron simsii
RhsimUnG0139700 Rhododendron simsii
Sabra04G0141400 Salix brachista
Sabra16G0221700 Salix brachista
SalBow3G2698 Salvia bowleyana
SalBow4G1096 Salvia bowleyana
SalBow4G3269 Salvia bowleyana
Sc08g0001780 Simmondsia chinensis
Sc12g0001930 Simmondsia chinensis
Sed0001665 Sechium edule
Sed0011305 Sechium edule
Sed0014299 Sechium edule
Sed0014494 Sechium edule
Sed0027314 Sechium edule
SEGI_06788 Sequoiadendron giganteum
SEGI_15913 Sequoiadendron giganteum
SEGI_23335 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30109 Striga asiatica
SGA_v2.0_scaffold43G16261 Striga asiatica
SGA_v2.0_scaffold77G25354 Striga asiatica
SMO111G0148 Selaginella moellendorffii
SMO351G0113 Selaginella moellendorffii
Solyc01g097770.4 Solanum lycopersicum
Solyc11g072710.3 Solanum lycopersicum
Sopen01g041370 Solanum pennellii
Sopen11g030380 Solanum pennellii
Sp5g15740 Schrenkiella parvula
Sp6g19820 Schrenkiella parvula
SpUn0096_0010 Schrenkiella parvula
TAR376G1082 Trochodendron aralioides
TAR381G0168 Trochodendron aralioides
TAR623G0204 Trochodendron aralioides
THA.LOC104798388 Tarenaya hassleriana
THA.LOC104810827 Tarenaya hassleriana
THA.LOC104824655 Tarenaya hassleriana
Thecc.02G149600 Theobroma cacao
Thecc.09G334300 Theobroma cacao
Thhalv10002386m.g Eutrema salsugineum
Thhalv10012609m.g Eutrema salsugineum
TPR.G2972 Trifolium pratense
TPR.G3925 Trifolium pratense
TPR.G6124 Trifolium pratense
TPR.G8944 Trifolium pratense
TWI75G1332 Tripterygium wilfordii
TWI79G0967 Tripterygium wilfordii
unitig_0.g1030 Utricularia gibba
unitig_0.g1031 Utricularia gibba
unitig_899.g15573 Utricularia gibba
unitig_899.g15574 Utricularia gibba
vmacro00900 Vaccinium macrocarpon
vmacro03141 Vaccinium macrocarpon
vmacro03142 Vaccinium macrocarpon
VMungo0251G3075 Vigna mungo
VMungo1080G0202 Vigna mungo
VMungo1127G0380 Vigna mungo
Zm00001eb042710 Zea mays
Zm00001eb163120 Zea mays

User provided reference genes

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