Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p48510 Brassica napus
A09p44950 Brassica napus
A10p15700 Brassica napus
Aa31sc655G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5589 Anthoceros agrestis
Actinidia13466 Actinidia chinensis
Actinidia32528 Actinidia chinensis
Actinidia32627 Actinidia chinensis
Ah.12g058910 Amaranthus hybridus
AL5G32240 Arabidopsis lyrata
Aqoxy2G00830 Aquilegia oxysepala
Aqoxy4G00107 Aquilegia oxysepala
Aqoxy4G02450 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.35MDCZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9JS9HJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AWBP0X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KDQ9M0 Arachis hypogaea
AT3G51780 Arabidopsis thaliana
ATR0681G253 Amborella trichopoda
ATR1098G118 Amborella trichopoda
Atru.chr10.1035 Acer truncatum
Atru.chr3.4163 Acer truncatum
Atru.chr8.2289 Acer truncatum
AUR62030504 Chenopodium quinoa
AUR62030789 Chenopodium quinoa
BcaB01g00419 Brassica carinata
BcaB01g00477 Brassica carinata
BcaB08g36193 Brassica carinata
BcaC06g33007 Brassica carinata
BcaC06g33350 Brassica carinata
BolC7t45175H Brassica oleracea
BolC8t50318H Brassica oleracea
BraA03t13956Z Brassica rapa
BraA09t39954Z Brassica rapa
C07p46600 Brassica napus
C08p27030 Brassica napus
C09p50570 Brassica napus
CAN.G241.13 Capsicum annuum
CAN.G241.18 Capsicum annuum
CAN.G243.36 Capsicum annuum
CAN.G36.27 Capsicum annuum
CANSAT35G0912 Cannabis sativa
CANSAT35G1428 Cannabis sativa
CANSAT54G2474 Cannabis sativa
CARHR161410 Cardamine hirsuta
CARHR272420 Cardamine hirsuta
Carub.0005s1813 Capsella rubella
Ca_00518_v3 Cicer arietinum L.
Ca_05632_v3 Cicer arietinum L.
Ca_07667_v3 Cicer arietinum L.
Ca_20132_v3 Cicer arietinum L.
Ca_27467_v3 Cicer arietinum L.
Cc01_g14550 Coffea canephora
Cc06_g01020 Coffea canephora
Cc09_g08670 Coffea canephora
CDE04G1033 Ceratophyllum demersum
CDE04G1540 Ceratophyllum demersum
Cfa000876 Carpinus fangiana
Cfa011734 Carpinus fangiana
Cfa017163 Carpinus fangiana
Cfa017180 Carpinus fangiana
Ciclev10012355m.g Citrus clementina
Ciclev10016355m.g Citrus clementina
CiPaw.09G117900 Carya illinoinensis
CiPaw.09G212600 Carya illinoinensis
CiPaw.10G159000 Carya illinoinensis
CiPaw.13G073900 Carya illinoinensis
CiPaw.14G056800 Carya illinoinensis
ClCG02G019410 Citrullus lanatus
ClCG03G006440 Citrullus lanatus
ClCG04G006840 Citrullus lanatus
COL.COLO4_11086 Corchorus olitorius
COL.COLO4_14492 Corchorus olitorius
COL.COLO4_14493 Corchorus olitorius
COL.COLO4_17661 Corchorus olitorius
Cpa.g.sc120.29 Carica papaya
Cpa.g.sc2.421 Carica papaya
Cre12.g544900 Chlamydomonas reinhardtii
CsaV3_1G036950 Cucumis sativus L.
CsaV3_4G026440 Cucumis sativus L.
CsaV3_6G016030 Cucumis sativus L.
CSS0000044 Camellia sinensis var. sinensis
CSS0007025 Camellia sinensis var. sinensis
CSS0024381 Camellia sinensis var. sinensis
CSS0029714 Camellia sinensis var. sinensis
CSS0030278 Camellia sinensis var. sinensis
CSS0037738 Camellia sinensis var. sinensis
CSS0038872 Camellia sinensis var. sinensis
DCAR_024008 Daucus carota
DCAR_028871 Daucus carota
Dinv08452 Davidia involucrata
Dinv09647 Davidia involucrata
Dinv21496 Davidia involucrata
Dinv28669 Davidia involucrata
Dinv32204 Davidia involucrata
Duzib052G0860 Durio zibethinus
Duzib093G0094 Durio zibethinus
Duzib106G1236 Durio zibethinus
Duzib132G0491 Durio zibethinus
Duzib150G0122 Durio zibethinus
Duzib168G2210 Durio zibethinus
Duzib248G0394 Durio zibethinus
ECA247G1777 Erigeron canadensis
ECA247G1904 Erigeron canadensis
EL10Ac5g12522 Beta vulgaris
EL10Ac7g17165 Beta vulgaris
Eucgr.D00246 Eucalyptus grandis
Eucgr.J01901 Eucalyptus grandis
Eucgr.K02967 Eucalyptus grandis
FAN02G0065 Fragaria x ananassa
FAN05G3081 Fragaria x ananassa
FAN11G1936 Fragaria x ananassa
FAN11G3369 Fragaria x ananassa
FAN14G5513 Fragaria x ananassa
FAN16G0022 Fragaria x ananassa
FAN21G2438 Fragaria x ananassa
FAN21G2868 Fragaria x ananassa
FAN25G0778 Fragaria x ananassa
FvH4_3g09490 Fragaria vesca
FvH4_3g39130 Fragaria vesca
FvH4_6g11020 Fragaria vesca
Glyma.01G123300 Glycine max
Glyma.02G229300 Glycine max
Glyma.03G051600 Glycine max
Glyma.07G153700 Glycine max
Glyma.13G220500 Glycine max
Glyma.15G091900 Glycine max
Gohir.A01G228500 Gossypium hirsutum
Gohir.A04G094300 Gossypium hirsutum
Gohir.A05G107600 Gossypium hirsutum
Gohir.A08G201900 Gossypium hirsutum
Gohir.D01G218400 Gossypium hirsutum
Gohir.D04G133700 Gossypium hirsutum
Gohir.D05G107800 Gossypium hirsutum
Gohir.D08G218900 Gossypium hirsutum
Gohir.D09G162500 Gossypium hirsutum
Gorai.002G265100 Gossypium raimondii
Gorai.004G233000 Gossypium raimondii
Gorai.006G184200 Gossypium raimondii
Gorai.009G111900 Gossypium raimondii
Gorai.012G117500 Gossypium raimondii
GSVIVG01021575001 Vitis vinifera
GSVIVG01024693001 Vitis vinifera
GSVIVG01030331001 Vitis vinifera
HanXRQChr08g0229171 Helianthus annuus
HanXRQChr10g0291511 Helianthus annuus
HanXRQChr15g0463931 Helianthus annuus
Haze_05715 Corylus avellana
Haze_21042 Corylus avellana
Haze_24374 Corylus avellana
Hma1.2p1_0689F.1_g203790 Hydrangea macrophylla
HPP92_017718 Vanilla planifolia
HPP92_023751 Vanilla planifolia
Hund10957 Selenicereus undatus
Lalb_Chr01g0023201 Lupinus albus
Lalb_Chr03g0043391 Lupinus albus
Lalb_Chr07g0191241 Lupinus albus
Lalb_Chr10g0103501 Lupinus albus
Lalb_Chr19g0124351 Lupinus albus
Lj1A130T37 Lonicera japonica
Lj1C1167T10 Lonicera japonica
Lj1g0013682 Lotus japonicus
Lj2A70T40 Lonicera japonica
Lj3g0023463 Lotus japonicus
Lj6g0017799 Lotus japonicus
Lsat_1_v5_gn_9_18801 Lactuca sativa
Lsat_1_v5_gn_9_37481 Lactuca sativa
Manes.09G108800 Manihot esculenta
Manes.17G074800 Manihot esculenta
Manes.18G141400 Manihot esculenta
Mapoly0056s0101 Marchantia polymorpha
MBI02_g26598_MAGBIO Magnolia biondii
MBI03_g18943_MAGBIO Magnolia biondii
MBI05_g18174_MAGBIO Magnolia biondii
MBI11_g32387_MAGBIO Magnolia biondii
MBI15_g28808_MAGBIO Magnolia biondii
MBI16_g18969_MAGBIO Magnolia biondii
MBI18_g41139_MAGBIO Magnolia biondii
MBI18_g43580_MAGBIO Magnolia biondii
MCO07G219 Micromonas commoda
MD03G1063900 Malus domestica
MD04G1162100 Malus domestica
MD05G1277400 Malus domestica
MD10G1256300 Malus domestica
MD11G1067400 Malus domestica
MD12G1174600 Malus domestica
Medtr2g018860 Medicago truncatula
Medtr2g032910 Medicago truncatula
Medtr4g017810 Medicago truncatula
Medtr7g069610 Medicago truncatula
MELO3C001657.2 Cucumis melo
MELO3C002778.2 Cucumis melo
MELO3C026009.2 Cucumis melo
MELO3C028118.2 Cucumis melo
Migut.H01345 Erythranthe guttata
Migut.J00125 Erythranthe guttata
Migut.L02035 Erythranthe guttata
MSTRG.13260 Avicennia marina
MSTRG.14784 Avicennia marina
MSTRG.5559 Avicennia marina
Nitab4.5_0000315g0190 Nicotiana tabacum
Nitab4.5_0000721g0290 Nicotiana tabacum
Nitab4.5_0000967g0090 Nicotiana tabacum
Nitab4.5_0006993g0010 Nicotiana tabacum
Nitab4.5_0008731g0010 Nicotiana tabacum
Nitab4.5_0008731g0020 Nicotiana tabacum
Nitab4.5_0011532g0010 Nicotiana tabacum
Nn2g10931 Nelumbo nucifera
Nn3g20290 Nelumbo nucifera
Nn4g26646 Nelumbo nucifera
Oeu033562.1 Olea europaea
Oeu041162.1 Olea europaea
Oeu063381.1 Olea europaea
Os01g0831200 Oryza sativa ssp. japonica
Os04g0619900 Oryza sativa ssp. japonica
Peaxi162Scf00009g01415 Petunia axillaris
Peaxi162Scf00045g02321 Petunia axillaris
Peaxi162Scf00053g02011 Petunia axillaris
PGR004G0145 Punica granatum
PGR083G0522 Punica granatum
PGSC0003DMG400011032 Solanum tuberosum
PGSC0003DMG400020545 Solanum tuberosum
PGSC0003DMG400038559 Solanum tuberosum
Phvul.006G167400 Phaseolus vulgaris
Phvul.008G095000 Phaseolus vulgaris
Phvul.008G259000 Phaseolus vulgaris
Phvul.010G073600 Phaseolus vulgaris
Phvul.010G086300 Phaseolus vulgaris
Potri.001G279500 Populus trichocarpa
Potri.001G358200 Populus trichocarpa
Potri.009G074300 Populus trichocarpa
Potri.016G121200 Populus trichocarpa
Pp3c26_11200 Physcomitrium patens
Pp3c4_23970 Physcomitrium patens
Prupe.4G087300 Prunus persica
Prupe.6G053300 Prunus persica
Prupe.6G281800 Prunus persica
Psat1g191720 Pisum sativum
Psat3g125600 Pisum sativum
Psat7g243240 Pisum sativum
PSO017G0714 Papaver somniferum
PSO170G0888 Papaver somniferum
PSO541G3764 Papaver somniferum
PSO675G4917 Papaver somniferum
QL01p039232 Quercus lobata
QL05p054348 Quercus lobata
QL07p034427 Quercus lobata
RcHm_v2.0_Chr3g0462361 Rosa chinensis
RcHm_v2.0_Chr5g0015071 Rosa chinensis
RcHm_v2.0_Chr5g0070521 Rosa chinensis
Rhsim04G0126100 Rhododendron simsii
Rhsim13G0066900 Rhododendron simsii
Sabra09G0056400 Salix brachista
Sabra16G0173200 Salix brachista
Sabra16G0236000 Salix brachista
SalBow4G1002 Salvia bowleyana
SalBow4G2897 Salvia bowleyana
SalBow7G2469 Salvia bowleyana
SalBow7G4789 Salvia bowleyana
Sc05g0005940 Simmondsia chinensis
Sc22g0002600 Simmondsia chinensis
Sed0008953 Sechium edule
Sed0011799 Sechium edule
Sed0015014 Sechium edule
Sed0018204 Sechium edule
Sed0019680 Sechium edule
SEGI_21113 Sequoiadendron giganteum
SGA_v2.0_scaffold240G44076 Striga asiatica
SGA_v2.0_scaffold51G18643 Striga asiatica
SGA_v2.0_scaffold85G26711 Striga asiatica
SMO145G0066 Selaginella moellendorffii
SMO364G0720 Selaginella moellendorffii
Solyc06g007240.4 Solanum lycopersicum
Solyc10g085290.3 Solanum lycopersicum
Sopen06g002200 Solanum pennellii
Sopen10g034740 Solanum pennellii
Sp5g10490 Schrenkiella parvula
TAR623G1749 Trochodendron aralioides
TAR626G0758 Trochodendron aralioides
TAR627G0304 Trochodendron aralioides
TAR633G2349 Trochodendron aralioides
TAR636G0028 Trochodendron aralioides
TAR636G1775 Trochodendron aralioides
THA.LOC104806601 Tarenaya hassleriana
THA.LOC104806612 Tarenaya hassleriana
THA.LOC104825344 Tarenaya hassleriana
Thecc.02G009800 Theobroma cacao
Thecc.05G010500 Theobroma cacao
Thecc.09G353000 Theobroma cacao
Thhalv10010632m.g Eutrema salsugineum
TPR.G21315 Trifolium pratense
TPR.G26245 Trifolium pratense
TPR.G8211 Trifolium pratense
TWI09G1363 Tripterygium wilfordii
TWI31G0046 Tripterygium wilfordii
TWI74G0514 Tripterygium wilfordii
unitig_21.g20361 Utricularia gibba
unitig_26.g9082 Utricularia gibba
vmacro02943 Vaccinium macrocarpon
vmacro08895 Vaccinium macrocarpon
VMungo0540G0680 Vigna mungo
VMungo0647G2426 Vigna mungo
VMungo1383G1002 Vigna mungo
Zm00001eb070410 Zea mays
Zm00001eb148980 Zea mays
Zm00001eb368400 Zea mays

User provided reference genes

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