Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p15930 Brassica napus
A03p04140 Brassica napus
A04p17010 Brassica napus
A09p57510 Brassica napus
Aa31LG3G17520 Aethionema arabicum
Aa31LG6G15060 Aethionema arabicum
Aa31LG7G14320 Aethionema arabicum
Actinidia06524 Actinidia chinensis
Actinidia10376 Actinidia chinensis
Actinidia27135 Actinidia chinensis
Actinidia27638 Actinidia chinensis
Actinidia30819 Actinidia chinensis
Ah.02g125900 Amaranthus hybridus
AL4G12040 Arabidopsis lyrata
AL6G19870 Arabidopsis lyrata
AL7G28630 Arabidopsis lyrata
Aqoxy5G01322 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6GDW19 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0BPHG Arachis hypogaea
AT2G22500 Arabidopsis thaliana
AT4G24570 Arabidopsis thaliana
AT5G09470 Arabidopsis thaliana
ATR0022G016 Amborella trichopoda
Atru.chr13.1033 Acer truncatum
Atru.chr3.1291 Acer truncatum
AUR62027176 Chenopodium quinoa
BcaB01g05574 Brassica carinata
BcaB08g35079 Brassica carinata
BcaC01g00743 Brassica carinata
BcaC02g08072 Brassica carinata
BcaC02g08649 Brassica carinata
BcaC02g11569 Brassica carinata
BcaC07g41063 Brassica carinata
BcaC09g50852 Brassica carinata
BcaNung04964 Brassica carinata
BcaNung07213 Brassica carinata
BolC1t01918H Brassica oleracea
BolC3t12992H Brassica oleracea
BolC4t26474H Brassica oleracea
BolC4t26750H Brassica oleracea
BolC8t51629H Brassica oleracea
BraA01t01527Z Brassica rapa
BraA03t09758Z Brassica rapa
BraA04t17330Z Brassica rapa
BraA09t41142Z Brassica rapa
C01p19900 Brassica napus
C03p04600 Brassica napus
C04p48910 Brassica napus
C04p51710 Brassica napus
C04p58730 Brassica napus
C08p40620 Brassica napus
CAN.G1388.11 Capsicum annuum
CAN.G712.7 Capsicum annuum
CANSAT01G3048 Cannabis sativa
CANSAT11G1938 Cannabis sativa
CARHR113700 Cardamine hirsuta
CARHR203910 Cardamine hirsuta
CARHR231970 Cardamine hirsuta
Carub.0004s0166 Capsella rubella
Carub.0006s0804 Capsella rubella
Carub.0007s1650 Capsella rubella
Ca_04538_v3 Cicer arietinum L.
Ca_15992_v3 Cicer arietinum L.
Ca_22596_v3 Cicer arietinum L.
Cc07_g14260 Coffea canephora
Cc10_g15730 Coffea canephora
CDE10G0515 Ceratophyllum demersum
CDE10G1369 Ceratophyllum demersum
Cfa004352 Carpinus fangiana
Cfa005696 Carpinus fangiana
Cfa013694 Carpinus fangiana
Ciclev10001822m.g Citrus clementina
Ciclev10026128m.g Citrus clementina
CiPaw.01G047000 Carya illinoinensis
CiPaw.02G021200 Carya illinoinensis
CiPaw.05G031000 Carya illinoinensis
CiPaw.07G167100 Carya illinoinensis
ClCG01G018450 Citrullus lanatus
ClCG08G011760 Citrullus lanatus
ClCG08G011770 Citrullus lanatus
COL.COLO4_27343 Corchorus olitorius
COL.COLO4_32357 Corchorus olitorius
COL.COLO4_32368 Corchorus olitorius
COL.COLO4_35205 Corchorus olitorius
Cpa.g.sc21.2 Carica papaya
Cpa.g.sc55.41 Carica papaya
CsaV3_2G030380 Cucumis sativus L.
CsaV3_2G030390 Cucumis sativus L.
CsaV3_6G045100 Cucumis sativus L.
CSS0026962 Camellia sinensis var. sinensis
CSS0031832 Camellia sinensis var. sinensis
CSS0036598 Camellia sinensis var. sinensis
CSS0042150 Camellia sinensis var. sinensis
DCAR_003451 Daucus carota
Dinv13620 Davidia involucrata
Dinv20778 Davidia involucrata
Dinv44846 Davidia involucrata
Duzib041G0059 Durio zibethinus
Duzib093G0751 Durio zibethinus
Duzib132G0775 Durio zibethinus
Duzib187G0904 Durio zibethinus
Duzib264G1281 Durio zibethinus
ECA232G2182 Erigeron canadensis
ECA238G1356 Erigeron canadensis
ECA246G0332 Erigeron canadensis
ECA246G5023 Erigeron canadensis
EL10Ac6g14785 Beta vulgaris
Eucgr.I00553 Eucalyptus grandis
FAN04G2760 Fragaria x ananassa
FAN08G0382 Fragaria x ananassa
FAN13G1926 Fragaria x ananassa
FAN18G3956 Fragaria x ananassa
FAN19G2846 Fragaria x ananassa
FAN23G2266 Fragaria x ananassa
FAN26G3304 Fragaria x ananassa
FAN28G2300 Fragaria x ananassa
FvH4_1g19840 Fragaria vesca
FvH4_5g35620 Fragaria vesca
Glyma.01G024000 Glycine max
Glyma.02G040700 Glycine max
Glyma.04G092100 Glycine max
Glyma.06G093900 Glycine max
Glyma.08G280300 Glycine max
Gohir.A02G131001 Gossypium hirsutum
Gohir.A03G176000 Gossypium hirsutum
Gohir.A11G206300 Gossypium hirsutum
Gohir.D02G199800 Gossypium hirsutum
Gohir.D03G042400 Gossypium hirsutum
Gohir.D11G217400 Gossypium hirsutum
Gorai.003G043000 Gossypium raimondii
Gorai.005G224500 Gossypium raimondii
Gorai.007G233400 Gossypium raimondii
GSVIVG01009152001 Vitis vinifera
HanXRQChr05g0129931 Helianthus annuus
HanXRQChr05g0149551 Helianthus annuus
HanXRQChr10g0277801 Helianthus annuus
HanXRQChr14g0442651 Helianthus annuus
Haze_04578 Corylus avellana
Haze_10553 Corylus avellana
Haze_15071 Corylus avellana
Haze_22333 Corylus avellana
Hma1.2p1_0119F.1_g056570 Hydrangea macrophylla
Hma1.2p1_0125F.1_g059010 Hydrangea macrophylla
Hma1.2p1_0125F.1_g059020 Hydrangea macrophylla
Hma1.2p1_0397F.1_g143700 Hydrangea macrophylla
Hma1.2p1_2272F.1_g318586 Hydrangea macrophylla
HPP92_010951 Vanilla planifolia
Lalb_Chr05g0216461 Lupinus albus
Lalb_Chr05g0228481 Lupinus albus
Lalb_Chr16g0381721 Lupinus albus
Lj1g0027674 Lotus japonicus
Lj2g0017063 Lotus japonicus
Lj4A270T41 Lonicera japonica
Lj4g0005804 Lotus japonicus
Lj4P735T24 Lonicera japonica
Lju188A1T77 Lonicera japonica
Lsat_1_v5_gn_2_70900 Lactuca sativa
Lsat_1_v5_gn_3_61281 Lactuca sativa
Lsat_1_v5_gn_6_106401 Lactuca sativa
Lsat_1_v5_gn_9_76421 Lactuca sativa
Manes.02G146000 Manihot esculenta
Manes.10G101501 Manihot esculenta
Manes.10G101601 Manihot esculenta
Manes.10G101700 Manihot esculenta
Manes.10G101800 Manihot esculenta
Manes.10G101900 Manihot esculenta
Manes.12G127500 Manihot esculenta
Manes.13G099000 Manihot esculenta
Mapoly0071s0070 Marchantia polymorpha
Mapoly0198s0014 Marchantia polymorpha
MBI02_g19396_MAGBIO Magnolia biondii
MBI06_g36043_MAGBIO Magnolia biondii
MCO05G531 Micromonas commoda
MD01G1038000 Malus domestica
MD08G1195400 Malus domestica
MD15G1315000 Malus domestica
MD15G1383200 Malus domestica
Medtr3g100570 Medicago truncatula
Medtr5g032420 Medicago truncatula
Medtr8g068890 Medicago truncatula
MELO3C001274.2 Cucumis melo
MELO3C007723.2 Cucumis melo
MELO3C011101.2 Cucumis melo
MELO3C030107.2 Cucumis melo
Migut.H02305 Erythranthe guttata
Migut.H02306 Erythranthe guttata
Migut.K00784 Erythranthe guttata
MSTRG.15697 Avicennia marina
MSTRG.3742 Avicennia marina
Nitab4.5_0000128g0090 Nicotiana tabacum
Nitab4.5_0001468g0070 Nicotiana tabacum
Nitab4.5_0010196g0040 Nicotiana tabacum
Nitab4.5_0011414g0010 Nicotiana tabacum
Nn1g05527 Nelumbo nucifera
Nn5g29921 Nelumbo nucifera
Oeu040001.1 Olea europaea
Oeu046534.2 Olea europaea
Oeu053587.1 Olea europaea
Oeu053589.1 Olea europaea
Os09g0465400 Oryza sativa ssp. japonica
Peaxi162Scf00044g00221 Petunia axillaris
Peaxi162Scf00211g00072 Petunia axillaris
Peaxi162Scf00447g00015 Petunia axillaris
PGR042G3481 Punica granatum
PGR102G2006 Punica granatum
PGSC0003DMG400014597 Solanum tuberosum
PGSC0003DMG400016140 Solanum tuberosum
Phvul.002G148300 Phaseolus vulgaris
Phvul.009G143800 Phaseolus vulgaris
Potri.002G104400 Populus trichocarpa
Potri.005G157300 Populus trichocarpa
Potri.007G113000 Populus trichocarpa
Potri.017G045100 Populus trichocarpa
Potri.017G045150 Populus trichocarpa
Potri.017G045200 Populus trichocarpa
Potri.017G045332 Populus trichocarpa
Potri.017G045400 Populus trichocarpa
Potri.017G047800 Populus trichocarpa
Pp3c11_4150 Physcomitrium patens
Pp3c11_4200 Physcomitrium patens
Pp3c1_3300 Physcomitrium patens
Pp3c2_29330 Physcomitrium patens
Pp3s51_90 Physcomitrium patens
PRCOL_00000172 Prasinoderma coloniale
Prupe.1G529200 Prunus persica
Prupe.6G196900 Prunus persica
Prupe.8G067800 Prunus persica
Psat2g082480 Pisum sativum
Psat4g116480 Pisum sativum
PSO017G5138 Papaver somniferum
PSO170G5019 Papaver somniferum
PSO541G5030 Papaver somniferum
PSO675G2424 Papaver somniferum
QL06p047458 Quercus lobata
QL09p017490 Quercus lobata
QL11p021742 Quercus lobata
QL11p021763 Quercus lobata
QL11p023853 Quercus lobata
RcHm_v2.0_Chr2g0111661 Rosa chinensis
RcHm_v2.0_Chr7g0237101 Rosa chinensis
Rhsim06G0072900 Rhododendron simsii
Rhsim06G0073000 Rhododendron simsii
Rhsim06G0073100 Rhododendron simsii
Rhsim06G0073200 Rhododendron simsii
Rhsim06G0073300 Rhododendron simsii
Rhsim10G0172000 Rhododendron simsii
Sabra02G0081900 Salix brachista
Sabra07G0092300 Salix brachista
Sabra17G0030600 Salix brachista
Sabra17G0030700 Salix brachista
Sabra17G0032300 Salix brachista
SalBow3G0294 Salvia bowleyana
SalBow3G1878 Salvia bowleyana
SalBow3G2097 Salvia bowleyana
SalBow3G2391 Salvia bowleyana
SalBow3G2691 Salvia bowleyana
SalBow3G2796 Salvia bowleyana
SalBow3G3672 Salvia bowleyana
SalBow3G3834 Salvia bowleyana
SalBow3G4597 Salvia bowleyana
SalBow5G2258 Salvia bowleyana
Sc16g0000470 Simmondsia chinensis
Sed0009236 Sechium edule
Sed0018899 Sechium edule
Sed0024519 Sechium edule
SEGI_28810 Sequoiadendron giganteum
SGA_v2.0_scaffold195G40846 Striga asiatica
SGA_v2.0_scaffold45G17246 Striga asiatica
SMO118G0089 Selaginella moellendorffii
SMO203G0261 Selaginella moellendorffii
SMO347G0166 Selaginella moellendorffii
SMO347G0627 Selaginella moellendorffii
Solyc11g010500.1 Solanum lycopersicum
Sopen05g029810 Solanum pennellii
Sopen11g005280 Solanum pennellii
Sp4g01520 Schrenkiella parvula
Sp6g33860 Schrenkiella parvula
Sp7g22570 Schrenkiella parvula
TAR381G0358 Trochodendron aralioides
TAR625G1338 Trochodendron aralioides
TAR628G0205 Trochodendron aralioides
THA.LOC104799804 Tarenaya hassleriana
THA.LOC104799813 Tarenaya hassleriana
THA.LOC104804167 Tarenaya hassleriana
THA.LOC104818448 Tarenaya hassleriana
THA.LOC104824908 Tarenaya hassleriana
Thecc.01G092100 Theobroma cacao
Thecc.02G131900 Theobroma cacao
Thecc.08G069000 Theobroma cacao
Thhalv10000240m.g Eutrema salsugineum
Thhalv10016015m.g Eutrema salsugineum
Thhalv10027021m.g Eutrema salsugineum
TPR.G14616 Trifolium pratense
TPR.G29982 Trifolium pratense
TWI12G0131 Tripterygium wilfordii
TWI12G0593 Tripterygium wilfordii
TWI56G0228 Tripterygium wilfordii
TWI74G0290 Tripterygium wilfordii
unitig_21.g20144 Utricularia gibba
unitig_32.g10707 Utricularia gibba
unitig_748.g8477 Utricularia gibba
vmacro12998 Vaccinium macrocarpon
vmacro21325 Vaccinium macrocarpon
VMungo0251G0267 Vigna mungo
VMungo1215G1295 Vigna mungo
VMungo1309G1543 Vigna mungo
Zm00001eb038410 Zea mays

User provided reference genes

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