Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00610 Brassica napus
A02p43730 Brassica napus
A06p32020 Brassica napus
A08p23430 Brassica napus
A09p08940 Brassica napus
Aa31LG1G16790 Aethionema arabicum
Aa31LG6G15540 Aethionema arabicum
Actinidia10315 Actinidia chinensis
Actinidia28230 Actinidia chinensis
Actinidia30765 Actinidia chinensis
Ah.03g143460 Amaranthus hybridus
Ah.05g170160 Amaranthus hybridus
Ah.07g202150 Amaranthus hybridus
AL1G50790 Arabidopsis lyrata
AL7G11920 Arabidopsis lyrata
AL8G42690 Arabidopsis lyrata
Aqoxy5G01952 Aquilegia oxysepala
Aqoxy6G01489 Aquilegia oxysepala
AT1G35830 Arabidopsis thaliana
AT4G39720 Arabidopsis thaliana
AT5G65170 Arabidopsis thaliana
ATR0564G011 Amborella trichopoda
Atru.chr13.1210 Acer truncatum
Atru.chr4.102 Acer truncatum
AUR62003785 Chenopodium quinoa
AUR62027736 Chenopodium quinoa
BcaB02g09882 Brassica carinata
BcaB03g12265 Brassica carinata
BcaB04g20005 Brassica carinata
BcaC01g00312 Brassica carinata
BcaC01g02753 Brassica carinata
BcaC03g18311 Brassica carinata
BcaC03g18312 Brassica carinata
BcaNung00894 Brassica carinata
BcaNung05774 Brassica carinata
BolC1t00077H Brassica oleracea
BolC2t12455H Brassica oleracea
BolC3t18351H Brassica oleracea
BolC3t20077H Brassica oleracea
BolC9t53940H Brassica oleracea
BraA01t00069Z Brassica rapa
BraA02t09297Z Brassica rapa
BraA06t26132Z Brassica rapa
BraA08t34297Z Brassica rapa
BraA09t36545Z Brassica rapa
C01p00750 Brassica napus
C02p63870 Brassica napus
C03p60910 Brassica napus
C03p78140 Brassica napus
C09p10380 Brassica napus
CAN.G1261.2 Capsicum annuum
CAN.G1423.3 Capsicum annuum
CAN.G71.17 Capsicum annuum
CAN.G89.24 Capsicum annuum
CANSAT01G1277 Cannabis sativa
CARHR034600 Cardamine hirsuta
CARHR247000 Cardamine hirsuta
CARHR279090 Cardamine hirsuta
Carub.0001s3351 Capsella rubella
Carub.0007s0160 Capsella rubella
Carub.0008s2602 Capsella rubella
Ca_16535_v3 Cicer arietinum L.
Cc00_g16190 Coffea canephora
Cc10_g07360 Coffea canephora
CDE04G2176 Ceratophyllum demersum
CDE10G1100 Ceratophyllum demersum
CDE12G0360 Ceratophyllum demersum
Ciclev10001250m.g Citrus clementina
Ciclev10025465m.g Citrus clementina
CiPaw.03G140800 Carya illinoinensis
CiPaw.04G098500 Carya illinoinensis
CiPaw.07G181000 Carya illinoinensis
CiPaw.08G044200 Carya illinoinensis
ClCG01G018860 Citrullus lanatus
ClCG07G009510 Citrullus lanatus
ClCG11G015340 Citrullus lanatus
COL.COLO4_09948 Corchorus olitorius
COL.COLO4_16423 Corchorus olitorius
Cpa.g.sc36.121 Carica papaya
Cpa.g.sc568.1 Carica papaya
CsaV3_3G048740 Cucumis sativus L.
CsaV3_4G004780 Cucumis sativus L.
CsaV3_6G045520 Cucumis sativus L.
DCAR_001486 Daucus carota
DCAR_008723 Daucus carota
DCAR_014231 Daucus carota
Dinv13025 Davidia involucrata
Dinv14374 Davidia involucrata
Dinv16294 Davidia involucrata
Dinv21917 Davidia involucrata
Dinv44762 Davidia involucrata
Duzib041G0392 Durio zibethinus
Duzib093G1498 Durio zibethinus
Duzib116G0637 Durio zibethinus
Duzib187G0378 Durio zibethinus
Duzib264G0635 Durio zibethinus
ECA246G4579 Erigeron canadensis
EL10Ac1g01246 Beta vulgaris
Eucgr.F00302 Eucalyptus grandis
Eucgr.H04806 Eucalyptus grandis
Eucgr.H04807 Eucalyptus grandis
FAN04G2057 Fragaria x ananassa
FAN08G3322 Fragaria x ananassa
FAN13G1847 Fragaria x ananassa
FAN18G3682 Fragaria x ananassa
FAN19G2532 Fragaria x ananassa
FAN23G0347 Fragaria x ananassa
FAN26G0006 Fragaria x ananassa
FAN28G1714 Fragaria x ananassa
FvH4_1g21110 Fragaria vesca
FvH4_5g37690 Fragaria vesca
Glyma.04G103300 Glycine max
Glyma.05G179700 Glycine max
Glyma.06G104400 Glycine max
Glyma.06G104500 Glycine max
Glyma.08G137300 Glycine max
Glyma.11G239600 Glycine max
Glyma.14G172200 Glycine max
Glyma.18G017800 Glycine max
Gohir.1Z049554 Gossypium hirsutum
Gohir.A01G127900 Gossypium hirsutum
Gohir.A05G227701 Gossypium hirsutum
Gohir.A05G267450 Gossypium hirsutum
Gohir.A06G036500 Gossypium hirsutum
Gohir.A10G085433 Gossypium hirsutum
Gohir.A10G085466 Gossypium hirsutum
Gohir.A11G200700 Gossypium hirsutum
Gohir.A12G093700 Gossypium hirsutum
Gohir.D01G114600 Gossypium hirsutum
Gohir.D05G230150 Gossypium hirsutum
Gohir.D05G269200 Gossypium hirsutum
Gohir.D06G037300 Gossypium hirsutum
Gohir.D10G103300 Gossypium hirsutum
Gohir.D11G222400 Gossypium hirsutum
Gohir.D12G096700 Gossypium hirsutum
Gorai.002G139900 Gossypium raimondii
Gorai.007G240000 Gossypium raimondii
Gorai.008G104800 Gossypium raimondii
Gorai.009G238300 Gossypium raimondii
Gorai.009G281800 Gossypium raimondii
Gorai.010G042200 Gossypium raimondii
Gorai.011G113000 Gossypium raimondii
GSVIVG01005871001 Vitis vinifera
HanXRQChr11g0327721 Helianthus annuus
HanXRQChr15g0469911 Helianthus annuus
Haze_22252 Corylus avellana
Haze_24948 Corylus avellana
Hma1.2p1_0047F.1_g027920 Hydrangea macrophylla
Hma1.2p1_0120F.1_g057310 Hydrangea macrophylla
Hma1.2p1_0237F.1_g099350 Hydrangea macrophylla
Hma1.2p1_0308F.1_g120110 Hydrangea macrophylla
HPP92_011165 Vanilla planifolia
Hund13630 Selenicereus undatus
Hund16277 Selenicereus undatus
Lalb_Chr04g0253171 Lupinus albus
Lalb_Chr07g0185141 Lupinus albus
Lalb_Chr10g0102311 Lupinus albus
Lalb_Chr11g0075341 Lupinus albus
Lalb_Chr12g0203791 Lupinus albus
Lalb_Chr17g0344161 Lupinus albus
Lalb_Chr23g0277301 Lupinus albus
Lj1g0010784 Lotus japonicus
Lj4P722T21 Lonicera japonica
Lj6g0028020 Lotus japonicus
Lsat_1_v5_gn_5_43481 Lactuca sativa
Lsat_1_v5_gn_6_103400 Lactuca sativa
Lsat_1_v5_gn_9_41300 Lactuca sativa
Manes.02G153400 Manihot esculenta
Manes.12G136100 Manihot esculenta
Manes.13G093500 Manihot esculenta
Manes.18G068450 Manihot esculenta
MBI02_g08736_MAGBIO Magnolia biondii
MD01G1027700 Malus domestica
MD08G1181100 Malus domestica
MD15G1325900 Malus domestica
MD15G1366700 Malus domestica
Medtr3g087390 Medicago truncatula
Medtr5g063310 Medicago truncatula
Medtr8g090290 Medicago truncatula
MELO3C003446.2 Cucumis melo
MELO3C007765.2 Cucumis melo
MELO3C017584.2 Cucumis melo
Migut.C00264 Erythranthe guttata
Migut.H02364 Erythranthe guttata
Migut.L00113 Erythranthe guttata
Migut.N02904 Erythranthe guttata
MSTRG.22150 Avicennia marina
MSTRG.23339 Avicennia marina
MSTRG.24971 Avicennia marina
MSTRG.2564 Avicennia marina
MSTRG.3789 Avicennia marina
Nitab4.5_0000104g0170 Nicotiana tabacum
Nitab4.5_0000421g0040 Nicotiana tabacum
Nitab4.5_0001729g0010 Nicotiana tabacum
Nitab4.5_0002098g0010 Nicotiana tabacum
Nitab4.5_0005431g0010 Nicotiana tabacum
Nitab4.5_0008140g0010 Nicotiana tabacum
Nn1g05328 Nelumbo nucifera
Nn5g29085 Nelumbo nucifera
Oeu002177.1 Olea europaea
Oeu012912.1 Olea europaea
Oeu024536.1 Olea europaea
Oeu053554.1 Olea europaea
Oeu054843.1 Olea europaea
Oeu056601.2 Olea europaea
Os03g0387300 Oryza sativa ssp. japonica
Os08g0409500 Oryza sativa ssp. japonica
Os09g0370500 Oryza sativa ssp. japonica
Peaxi162Scf00041g10112 Petunia axillaris
Peaxi162Scf00160g00146 Petunia axillaris
Peaxi162Scf00805g00053 Petunia axillaris
PGR004G1355 Punica granatum
PGR102G0271 Punica granatum
PGSC0003DMG400001897 Solanum tuberosum
PGSC0003DMG400008542 Solanum tuberosum
PGSC0003DMG400017724 Solanum tuberosum
Phvul.001G251600 Phaseolus vulgaris
Phvul.002G254700 Phaseolus vulgaris
Phvul.008G172700 Phaseolus vulgaris
Phvul.009G030100 Phaseolus vulgaris
Potri.002G094900 Populus trichocarpa
Potri.005G076600 Populus trichocarpa
Potri.005G166100 Populus trichocarpa
Potri.007G091600 Populus trichocarpa
Prupe.1G514600 Prunus persica
Prupe.6G183200 Prunus persica
Psat2g073160 Pisum sativum
Psat5g088800 Pisum sativum
PSO210G7699 Papaver somniferum
PSO447G0020 Papaver somniferum
PSO541G5177 Papaver somniferum
PSO781G0246 Papaver somniferum
QL06p049857 Quercus lobata
QL12p036488 Quercus lobata
RcHm_v2.0_Chr2g0114891 Rosa chinensis
RcHm_v2.0_Chr7g0239391 Rosa chinensis
Rhsim06G0083300 Rhododendron simsii
Rhsim08G0009900 Rhododendron simsii
Rhsim10G0160200 Rhododendron simsii
Sabra02G0074900 Salix brachista
Sabra05G0063200 Salix brachista
Sabra05G0125200 Salix brachista
Sabra07G0075100 Salix brachista
SalBow3G1010 Salvia bowleyana
SalBow7G4583 Salvia bowleyana
Sc03g0002120 Simmondsia chinensis
Sed0007140 Sechium edule
Sed0012743 Sechium edule
Sed0013731 Sechium edule
Sed0014156 Sechium edule
Sed0019024 Sechium edule
Sed0027067 Sechium edule
SEGI_09893 Sequoiadendron giganteum
SEGI_14022 Sequoiadendron giganteum
SEGI_20878 Sequoiadendron giganteum
SEGI_24405 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31523 Striga asiatica
SGA_v2.0_scaffold47G17774 Striga asiatica
SGA_v2.0_scaffold54G19497 Striga asiatica
SMO201G0151 Selaginella moellendorffii
SMO347G0603 Selaginella moellendorffii
Solyc04g055050.1 Solanum lycopersicum
Solyc04g073950.2 Solanum lycopersicum
Solyc12g057000.1 Solanum lycopersicum
Sopen04g024900 Solanum pennellii
Sopen04g029150 Solanum pennellii
Sopen12g029660 Solanum pennellii
Sp1g30500 Schrenkiella parvula
Sp2g28260 Schrenkiella parvula
Sp7g36170 Schrenkiella parvula
TAR376G0352 Trochodendron aralioides
TAR381G0805 Trochodendron aralioides
TAR625G1352 Trochodendron aralioides
TAR628G0933 Trochodendron aralioides
THA.LOC104804153 Tarenaya hassleriana
THA.LOC104804554 Tarenaya hassleriana
THA.LOC104807867 Tarenaya hassleriana
THA.LOC104816820 Tarenaya hassleriana
THA.LOC104819309 Tarenaya hassleriana
Thecc.01G103300 Theobroma cacao
Thecc.08G108900 Theobroma cacao
Thhalv10001873m.g Eutrema salsugineum
Thhalv10004427m.g Eutrema salsugineum
Thhalv10025887m.g Eutrema salsugineum
TPR.G14352 Trifolium pratense
TPR.G17851 Trifolium pratense
TPR.G6263 Trifolium pratense
TWI12G1474 Tripterygium wilfordii
TWI53G1699 Tripterygium wilfordii
TWI56G0363 Tripterygium wilfordii
TWI77G0088 Tripterygium wilfordii
unitig_0.g1887 Utricularia gibba
unitig_21.g20603 Utricularia gibba
unitig_32.g10696 Utricularia gibba
unitig_578.g16203 Utricularia gibba
unitig_747.g21757 Utricularia gibba
unitig_88.g27725 Utricularia gibba
VMungo0251G2811 Vigna mungo
VMungo0647G0712 Vigna mungo
VMungo1080G1796 Vigna mungo
VMungo1309G0567 Vigna mungo
VMungo1383G2931 Vigna mungo
Zm00001eb084880 Zea mays
Zm00001eb098700 Zea mays
Zm00001eb178900 Zea mays
Zm00001eb311250 Zea mays
Zm00001eb392380 Zea mays

User provided reference genes

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