Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41920 Brassica napus
A03p01570 Brassica napus
A03p26590 Brassica napus
A10p31970 Brassica napus
Aa31LG1G21170 Aethionema arabicum
Aa31LG3G2880 Aethionema arabicum
Aa31LG5G8820 Aethionema arabicum
Actinidia09300 Actinidia chinensis
Actinidia24218 Actinidia chinensis
Actinidia38131 Actinidia chinensis
Actinidia39200 Actinidia chinensis
Ah.04g151420 Amaranthus hybridus
Ah.04g151430 Amaranthus hybridus
Ah.08g215690 Amaranthus hybridus
Ah.13g077070 Amaranthus hybridus
AL3G21630 Arabidopsis lyrata
AL4G21470 Arabidopsis lyrata
AL6G13790 Arabidopsis lyrata
Aqoxy2G00240 Aquilegia oxysepala
Aqoxy2G00247 Aquilegia oxysepala
Aqoxy2G00370 Aquilegia oxysepala
Aqoxy2G00371 Aquilegia oxysepala
Aqoxy2G01178 Aquilegia oxysepala
Aqoxy5G02525 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.EGDZ1U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HV4IE8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UUK80H Arachis hypogaea
AT2G27480 Arabidopsis thaliana
AT3G10300 Arabidopsis thaliana
AT5G04170 Arabidopsis thaliana
ATR0080G001 Amborella trichopoda
ATR0721G044 Amborella trichopoda
ATR0776G091 Amborella trichopoda
Atru.chr1.1220 Acer truncatum
Atru.chr1.1222 Acer truncatum
AUR62009753 Chenopodium quinoa
AUR62024513 Chenopodium quinoa
AUR62024516 Chenopodium quinoa
AUR62026104 Chenopodium quinoa
AUR62026107 Chenopodium quinoa
AUR62036190 Chenopodium quinoa
BcaB01g03074 Brassica carinata
BcaB01g05773 Brassica carinata
BcaB01g05887 Brassica carinata
BcaB04g21218 Brassica carinata
BcaC01g04943 Brassica carinata
BcaC06g32119 Brassica carinata
BcaC06g32120 Brassica carinata
BcaC09g48103 Brassica carinata
BolC1t05408H Brassica oleracea
BolC3t12745H Brassica oleracea
BolC3t15528H Brassica oleracea
BolC9t60008H Brassica oleracea
BraA01t04261Z Brassica rapa
BraA03t09532Z Brassica rapa
BraA03t11871Z Brassica rapa
BraA10t45241Z Brassica rapa
C03p01910 Brassica napus
C03p31850 Brassica napus
C09p72680 Brassica napus
CAN.G1358.7 Capsicum annuum
CAN.G1656.3 Capsicum annuum
CANSAT56G3719 Cannabis sativa
CANSAT80G1209 Cannabis sativa
CARHR084770 Cardamine hirsuta
CARHR120130 Cardamine hirsuta
CARHR209090 Cardamine hirsuta
Carub.0003s0948 Capsella rubella
Carub.0004s0811 Capsella rubella
Carub.0006s0312 Capsella rubella
Ca_01658_v3 Cicer arietinum L.
Ca_12261_v3 Cicer arietinum L.
CBR_g8880 Chara braunii
Cc01_g09090 Coffea canephora
Cc06_g18120 Coffea canephora
CDE02G2071 Ceratophyllum demersum
CDE04G1819 Ceratophyllum demersum
CDE07G0058 Ceratophyllum demersum
Cfa010013 Carpinus fangiana
Cfa016777 Carpinus fangiana
Ciclev10005529m.g Citrus clementina
Ciclev10029136m.g Citrus clementina
CiPaw.09G040500 Carya illinoinensis
CiPaw.10G035600 Carya illinoinensis
CiPaw.13G135500 Carya illinoinensis
ClCG01G012200 Citrullus lanatus
ClCG04G003720 Citrullus lanatus
COL.COLO4_00321 Corchorus olitorius
COL.COLO4_29950 Corchorus olitorius
Cpa.g.sc182.17 Carica papaya
Cpa.g.sc182.19 Carica papaya
Cpa.g.sc32.23 Carica papaya
CsaV3_1G014860 Cucumis sativus L.
CsaV3_4G027710 Cucumis sativus L.
CSS0002201 Camellia sinensis var. sinensis
CSS0024302 Camellia sinensis var. sinensis
DCAR_013614 Daucus carota
DCAR_016973 Daucus carota
DCAR_020511 Daucus carota
Dinv18674 Davidia involucrata
Dinv39661 Davidia involucrata
Dinv39662 Davidia involucrata
Dinv42551 Davidia involucrata
Duzib093G1258 Durio zibethinus
Duzib106G1489 Durio zibethinus
Duzib128G0862 Durio zibethinus
Duzib168G1155 Durio zibethinus
Duzib170G0387 Durio zibethinus
ECA233G3920 Erigeron canadensis
ECA236G0949 Erigeron canadensis
ECA248G0923 Erigeron canadensis
ECA248G3640 Erigeron canadensis
EL10Ac3g07140 Beta vulgaris
EL10Ac3g07145 Beta vulgaris
EL10Ac7g15827 Beta vulgaris
Eucgr.A02309 Eucalyptus grandis
Eucgr.I02592 Eucalyptus grandis
Eucgr.I02595 Eucalyptus grandis
Eucgr.J00498 Eucalyptus grandis
Eucgr.K01570 Eucalyptus grandis
Eucgr.K02020 Eucalyptus grandis
FAN02G3716 Fragaria x ananassa
FAN05G0994 Fragaria x ananassa
FAN09G0438 Fragaria x ananassa
FAN11G0407 Fragaria x ananassa
FAN14G1619 Fragaria x ananassa
FAN16G3172 Fragaria x ananassa
FAN21G0078 Fragaria x ananassa
FAN25G2309 Fragaria x ananassa
FvH4_3g24940 Fragaria vesca
FvH4_6g24530 Fragaria vesca
Glyma.10G106400 Glycine max
Glyma.12G185400 Glycine max
Glyma.13G316100 Glycine max
Gohir.A02G107200 Gossypium hirsutum
Gohir.A08G005200 Gossypium hirsutum
Gohir.D03G069703 Gossypium hirsutum
Gohir.D08G015600 Gossypium hirsutum
Gorai.003G090700 Gossypium raimondii
Gorai.004G009900 Gossypium raimondii
GSVIVG01005051001 Vitis vinifera
GSVIVG01036121001 Vitis vinifera
HanXRQChr01g0009091 Helianthus annuus
HanXRQChr13g0395961 Helianthus annuus
HanXRQChr13g0397061 Helianthus annuus
HanXRQChr16g0526971 Helianthus annuus
Haze_19787 Corylus avellana
Haze_19789 Corylus avellana
Haze_23371 Corylus avellana
Hma1.2p1_0110F.1_g052890 Hydrangea macrophylla
HPP92_001973 Vanilla planifolia
HPP92_018216 Vanilla planifolia
HPP92_027971 Vanilla planifolia
Hund18758 Selenicereus undatus
Hund19129 Selenicereus undatus
Hund19131 Selenicereus undatus
Lalb_Chr00c36g0408671 Lupinus albus
Lalb_Chr00c36g0408681 Lupinus albus
Lalb_Chr06g0173511 Lupinus albus
Lalb_Chr24g0393001 Lupinus albus
Lj1A1125T62 Lonicera japonica
Lj2A945T15 Lonicera japonica
Lj2A963T31 Lonicera japonica
Lj2C387T4 Lonicera japonica
Lj3g0017978 Lotus japonicus
Lj5g0017397 Lotus japonicus
Lsat_1_v5_gn_5_160840 Lactuca sativa
Lsat_1_v5_gn_6_38861 Lactuca sativa
Manes.04G002600 Manihot esculenta
Manes.09G017900 Manihot esculenta
Manes.09G018001 Manihot esculenta
Manes.11G162900 Manihot esculenta
Mapoly0075s0071 Marchantia polymorpha
MBI13_g14512_MAGBIO Magnolia biondii
MBI13_g23882_MAGBIO Magnolia biondii
MBI13_g25212_MAGBIO Magnolia biondii
MBI17_g08340_MAGBIO Magnolia biondii
MD00G1075300 Malus domestica
MD03G1144700 Malus domestica
MD11G1164500 Malus domestica
MD12G1082900 Malus domestica
MD14G1061500 Malus domestica
MD14G1077400 Malus domestica
MD14G1077700 Malus domestica
MD14G1077800 Malus domestica
Medtr1g051895 Medicago truncatula
Medtr2g086560 Medicago truncatula
Medtr2g105130 Medicago truncatula
MELO3C004702.2 Cucumis melo
MELO3C026331.2 Cucumis melo
Migut.D02445 Erythranthe guttata
Migut.J01721 Erythranthe guttata
Migut.O00786 Erythranthe guttata
MSTRG.18758 Avicennia marina
MSTRG.19837 Avicennia marina
MSTRG.21041 Avicennia marina
MSTRG.6408 Avicennia marina
Nitab4.5_0000677g0130 Nicotiana tabacum
Nitab4.5_0000755g0120 Nicotiana tabacum
Nitab4.5_0000826g0090 Nicotiana tabacum
Nitab4.5_0001319g0030 Nicotiana tabacum
Nitab4.5_0001618g0140 Nicotiana tabacum
Nitab4.5_0009324g0010 Nicotiana tabacum
Nn2g14166 Nelumbo nucifera
Nn2g15114 Nelumbo nucifera
Nn2g15122 Nelumbo nucifera
Nn7g36405 Nelumbo nucifera
Nn7g36406 Nelumbo nucifera
Nn7g36411 Nelumbo nucifera
Oeu006917.1 Olea europaea
Oeu017926.1 Olea europaea
Oeu022429.1 Olea europaea
Oeu033021.2 Olea europaea
Oeu042058.1 Olea europaea
Os08g0558100 Oryza sativa ssp. japonica
Os11g0140600 Oryza sativa ssp. japonica
Os12g0137100 Oryza sativa ssp. japonica
Peaxi162Scf00003g00415 Petunia axillaris
Peaxi162Scf00069g00117 Petunia axillaris
Peaxi162Scf00130g00831 Petunia axillaris
PGR004G1005 Punica granatum
PGR102G2944 Punica granatum
PGSC0003DMG400012715 Solanum tuberosum
PGSC0003DMG400026341 Solanum tuberosum
PGSC0003DMG400029828 Solanum tuberosum
Phvul.005G123400 Phaseolus vulgaris
Phvul.007G250200 Phaseolus vulgaris
Potri.004G202200 Populus trichocarpa
Potri.006G047300 Populus trichocarpa
Potri.009G163600 Populus trichocarpa
Potri.016G043600 Populus trichocarpa
Pp3c16_1670 Physcomitrium patens
Pp3c7_10910 Physcomitrium patens
Pp3c9_13450 Physcomitrium patens
Prupe.6G130400 Prunus persica
Prupe.7G053100 Prunus persica
Psat5g257640 Pisum sativum
Psat6g111280 Pisum sativum
Psat6g119720 Pisum sativum
PSO170G4804 Papaver somniferum
PSO170G5035 Papaver somniferum
PSO339G1345 Papaver somniferum
PSO339G4678 Papaver somniferum
PSO384G0981 Papaver somniferum
PSO384G4974 Papaver somniferum
PSO782G1394 Papaver somniferum
PSO782G1602 Papaver somniferum
PSO782G5008 Papaver somniferum
QL01p012231 Quercus lobata
QL07p003771 Quercus lobata
RcHm_v2.0_Chr3g0483641 Rosa chinensis
RcHm_v2.0_Chr5g0044731 Rosa chinensis
Rhsim04G0106500 Rhododendron simsii
Rhsim13G0112000 Rhododendron simsii
Sabra04G0136600 Salix brachista
Sabra06G0033000 Salix brachista
Sabra09G0127700 Salix brachista
Sabra16G0048400 Salix brachista
SalBow6G1140 Salvia bowleyana
SalBow6G1686 Salvia bowleyana
Sc12g0004530 Simmondsia chinensis
Sc13g0001570 Simmondsia chinensis
Sc13g0001580 Simmondsia chinensis
Sc19g0008520 Simmondsia chinensis
Sed0003766 Sechium edule
Sed0023281 Sechium edule
Sed0023645 Sechium edule
SEGI_17134 Sequoiadendron giganteum
SEGI_18644 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30372 Striga asiatica
SGA_v2.0_scaffold22G09863 Striga asiatica
SMO174G0122 Selaginella moellendorffii
Solyc10g079890.2 Solanum lycopersicum
Solyc11g068460.2 Solanum lycopersicum
Sopen04g008490 Solanum pennellii
Sopen10g030500 Solanum pennellii
Sopen11g027170 Solanum pennellii
Sp3g08560 Schrenkiella parvula
Sp4g10270 Schrenkiella parvula
Sp6g38580 Schrenkiella parvula
TAR369G0354 Trochodendron aralioides
TAR623G0171 Trochodendron aralioides
TAR623G0318 Trochodendron aralioides
TAR623G0483 Trochodendron aralioides
TAR623G1000 Trochodendron aralioides
TAR633G0826 Trochodendron aralioides
THA.LOC104800526 Tarenaya hassleriana
THA.LOC104816674 Tarenaya hassleriana
THA.LOC104827451 Tarenaya hassleriana
Thecc.05G147800 Theobroma cacao
Thecc.09G282900 Theobroma cacao
Thhalv10013932m.g Eutrema salsugineum
Thhalv10017930m.g Eutrema salsugineum
Thhalv10021208m.g Eutrema salsugineum
TPR.G14546 Trifolium pratense
TPR.G34597 Trifolium pratense
TPR.G4536 Trifolium pratense
TPR.G7606 Trifolium pratense
TWI74G1385 Tripterygium wilfordii
TWI79G1181 Tripterygium wilfordii
unitig_26.g9056 Utricularia gibba
vmacro03319 Vaccinium macrocarpon
vmacro09051 Vaccinium macrocarpon
vmacro21966 Vaccinium macrocarpon
VMungo0720G1144 Vigna mungo
VMungo1080G1729 Vigna mungo
Zm00001eb176050 Zea mays
Zm00001eb196390 Zea mays

User provided reference genes

Program Settings