Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00680 Brassica napus
A02p39980 Brassica napus
A06p35800 Brassica napus
A07p44720 Brassica napus
Aa31LG11G4290 Aethionema arabicum
Aa31LG3G16280 Aethionema arabicum
Aa31LG4G1280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.482 Anthoceros agrestis
Actinidia14136 Actinidia chinensis
Actinidia22284 Actinidia chinensis
Ah.10g025700 Amaranthus hybridus
Ah.10g029570 Amaranthus hybridus
Ah.12g060720 Amaranthus hybridus
AL2G40410 Arabidopsis lyrata
AL6G21400 Arabidopsis lyrata
AL6G36670 Arabidopsis lyrata
AL6G36680 Arabidopsis lyrata
Aqoxy7G02392 Aquilegia oxysepala
Aqoxy7G03326 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2L27AA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EW5W0P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JTFI54 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L8CG94 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MB389E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PC02MH Arachis hypogaea
AT1G79710 Arabidopsis thaliana
AT5G10820 Arabidopsis thaliana
AT5G25040 Arabidopsis thaliana
AT5G25050 Arabidopsis thaliana
ATR0580G120 Amborella trichopoda
Atru.chr7.2548 Acer truncatum
Atru.chr7.2553 Acer truncatum
AUR62009010 Chenopodium quinoa
AUR62023292 Chenopodium quinoa
AUR62024792 Chenopodium quinoa
AUR62024796 Chenopodium quinoa
AUR62032426 Chenopodium quinoa
AUR62032428 Chenopodium quinoa
AUR62033004 Chenopodium quinoa
AUR62034067 Chenopodium quinoa
BcaB02g08708 Brassica carinata
BcaB07g29933 Brassica carinata
BcaC03g13334 Brassica carinata
BcaC03g17927 Brassica carinata
BcaC08g47530 Brassica carinata
BcaNung02299 Brassica carinata
BolC2t12044H Brassica oleracea
BolC6t40370H Brassica oleracea
BolC7t44805H Brassica oleracea
BraA06t26505Z Brassica rapa
BraA07t31980Z Brassica rapa
C02p04680 Brassica napus
C02p59860 Brassica napus
C06p53540 Brassica napus
C07p42750 Brassica napus
CAN.G1008.9 Capsicum annuum
CAN.G1598.4 Capsicum annuum
CAN.G906.8 Capsicum annuum
CANSAT80G0023 Cannabis sativa
CARHR073480 Cardamine hirsuta
CARHR188440 Cardamine hirsuta
CARHR202470 Cardamine hirsuta
Carub.0002s2657 Capsella rubella
Carub.0006s0933 Capsella rubella
Carub.0006s2287 Capsella rubella
Carub.0006s2288 Capsella rubella
Ca_13059_v3 Cicer arietinum L.
Ca_13061_v3 Cicer arietinum L.
CBR_g18969 Chara braunii
Cc08_g07280 Coffea canephora
Cc08_g07500 Coffea canephora
CDE02G4702 Ceratophyllum demersum
CDE04G3238 Ceratophyllum demersum
Cfa001854 Carpinus fangiana
Ciclev10008084m.g Citrus clementina
Ciclev10008109m.g Citrus clementina
Ciclev10010366m.g Citrus clementina
CiPaw.02G163700 Carya illinoinensis
CiPaw.07G231000 Carya illinoinensis
CiPaw.07G231600 Carya illinoinensis
ClCG08G013740 Citrullus lanatus
ClCG08G013760 Citrullus lanatus
COL.COLO4_18964 Corchorus olitorius
COL.COLO4_18965 Corchorus olitorius
COL.COLO4_26784 Corchorus olitorius
Cpa.g.sc148.34 Carica papaya
CsaV3_2G032520 Cucumis sativus L.
CsaV3_2G032540 Cucumis sativus L.
CSS0026345 Camellia sinensis var. sinensis
CSS0048712 Camellia sinensis var. sinensis
DCAR_003014 Daucus carota
DCAR_003015 Daucus carota
DCAR_025538 Daucus carota
Dinv10286 Davidia involucrata
Dinv18465 Davidia involucrata
Dinv18467 Davidia involucrata
Dinv21429 Davidia involucrata
Dinv21430 Davidia involucrata
Dinv23266 Davidia involucrata
Duzib168G0857 Durio zibethinus
Duzib168G2026 Durio zibethinus
Duzib187G1169 Durio zibethinus
Duzib187G1398 Durio zibethinus
Duzib235G0213 Durio zibethinus
ECA232G0265 Erigeron canadensis
ECA246G0540 Erigeron canadensis
ECA246G2018 Erigeron canadensis
EL10Ac2g02485 Beta vulgaris
EL10Ac2g02488 Beta vulgaris
EL10Ac8g19406 Beta vulgaris
Eucgr.C01892 Eucalyptus grandis
Eucgr.C01893 Eucalyptus grandis
Eucgr.C01894 Eucalyptus grandis
Eucgr.C02600 Eucalyptus grandis
FAN02G0813 Fragaria x ananassa
FAN05G3751 Fragaria x ananassa
FAN09G2582 Fragaria x ananassa
FAN09G2812 Fragaria x ananassa
FAN14G3663 Fragaria x ananassa
FAN15G0083 Fragaria x ananassa
FAN27G0031 Fragaria x ananassa
FvH4_2g41231 Fragaria vesca
FvH4_6g28210 Fragaria vesca
Glyma.04G112100 Glycine max
Glyma.14G101100 Glycine max
Glyma.14G108700 Glycine max
Glyma.17G218400 Glycine max
Glyma.17G224000 Glycine max
Gohir.A05G060400 Gossypium hirsutum
Gohir.A05G060600 Gossypium hirsutum
Gohir.A05G060700 Gossypium hirsutum
Gohir.A05G117300 Gossypium hirsutum
Gohir.D05G062600 Gossypium hirsutum
Gohir.D05G062750 Gossypium hirsutum
Gohir.D05G062900 Gossypium hirsutum
Gohir.D05G118200 Gossypium hirsutum
Gorai.009G063700 Gossypium raimondii
Gorai.009G063800 Gossypium raimondii
Gorai.009G063900 Gossypium raimondii
Gorai.009G122100 Gossypium raimondii
GSVIVG01016099001 Vitis vinifera
GSVIVG01035983001 Vitis vinifera
GSVIVG01035987001 Vitis vinifera
HanXRQChr09g0274191 Helianthus annuus
HanXRQChr11g0350231 Helianthus annuus
HanXRQChr17g0536411 Helianthus annuus
HanXRQChr17g0539001 Helianthus annuus
HanXRQChr17g0539011 Helianthus annuus
Haze_16693 Corylus avellana
Haze_21387 Corylus avellana
Hma1.2p1_0329F.1_g127320 Hydrangea macrophylla
Hma1.2p1_0329F.1_g127330 Hydrangea macrophylla
Hma1.2p1_1670F.1_g296610 Hydrangea macrophylla
Hma1.2p1_1670F.1_g296620 Hydrangea macrophylla
Hma1.2p1_1670F.1_g296635 Hydrangea macrophylla
Hma1.2p1_1670F.1_g296650 Hydrangea macrophylla
Hma1.2p1_1670F.1_g296660 Hydrangea macrophylla
Hma1.2p1_2083F.1_g313590 Hydrangea macrophylla
Hma1.2p1_2083F.1_g313596 Hydrangea macrophylla
Hma1.2p1_2083F.1_g313610 Hydrangea macrophylla
HPP92_010742 Vanilla planifolia
HPP92_010743 Vanilla planifolia
HPP92_016079 Vanilla planifolia
HPP92_017436 Vanilla planifolia
HPP92_017437 Vanilla planifolia
HPP92_020854 Vanilla planifolia
HPP92_020855 Vanilla planifolia
Hund02977 Selenicereus undatus
Hund02978 Selenicereus undatus
Hund02980 Selenicereus undatus
Hund12555 Selenicereus undatus
Hund25614 Selenicereus undatus
Lalb_Chr14g0361731 Lupinus albus
Lalb_Chr23g0268171 Lupinus albus
Lj1g0025481 Lotus japonicus
Lj5g0010175 Lotus japonicus
Lj5g0017563 Lotus japonicus
Lj7A736T78 Lonicera japonica
Lj7C736G7 Lonicera japonica
Lj7C736T9 Lonicera japonica
Lj7C737T2 Lonicera japonica
Lj9C491T5 Lonicera japonica
Lsat_1_v5_gn_3_22800 Lactuca sativa
Lsat_1_v5_gn_3_25561 Lactuca sativa
Lsat_1_v5_gn_3_38921 Lactuca sativa
Lsat_1_v5_gn_4_85000 Lactuca sativa
Manes.04G101200 Manihot esculenta
Manes.16G130800 Manihot esculenta
Manes.16G131200 Manihot esculenta
Mapoly0094s0073 Marchantia polymorpha
MBI14_g31378_MAGBIO Magnolia biondii
MBI15_g08394_MAGBIO Magnolia biondii
MBI15_g27202_MAGBIO Magnolia biondii
MCO11G178 Micromonas commoda
MD08G1053000 Malus domestica
MD08G1053100 Malus domestica
MD08G1055000 Malus domestica
MD09G1228300 Malus domestica
MD17G1226600 Malus domestica
Medtr1g014220 Medicago truncatula
Medtr1g014250 Medicago truncatula
Medtr5g007060 Medicago truncatula
MELO3C011303.2 Cucumis melo
MELO3C011307.2 Cucumis melo
Migut.A00364 Erythranthe guttata
Migut.D01146 Erythranthe guttata
Migut.E01451 Erythranthe guttata
MSTRG.25826 Avicennia marina
MSTRG.9393 Avicennia marina
Nitab4.5_0000264g0100 Nicotiana tabacum
Nitab4.5_0000368g0440 Nicotiana tabacum
Nitab4.5_0000886g0100 Nicotiana tabacum
Nitab4.5_0001362g0060 Nicotiana tabacum
Nitab4.5_0002700g0040 Nicotiana tabacum
Nitab4.5_0004738g0020 Nicotiana tabacum
Nitab4.5_0004745g0020 Nicotiana tabacum
Nitab4.5_0025976g0010 Nicotiana tabacum
Nn2g12447 Nelumbo nucifera
Nn2g12454 Nelumbo nucifera
Nn8g40039 Nelumbo nucifera
Oeu001633.1 Olea europaea
Oeu003119.2 Olea europaea
Oeu009656.1 Olea europaea
Os04g0499100 Oryza sativa ssp. japonica
Os05g0376400 Oryza sativa ssp. japonica
Os06g0186700 Oryza sativa ssp. japonica
Os09g0423400 Oryza sativa ssp. japonica
Peaxi162Scf00045g01939 Petunia axillaris
Peaxi162Scf00045g01945 Petunia axillaris
Peaxi162Scf00207g00328 Petunia axillaris
Peaxi162Scf00314g01028 Petunia axillaris
PGR031G0957 Punica granatum
PGR142G1100 Punica granatum
PGSC0003DMG400026303 Solanum tuberosum
PGSC0003DMG400028924 Solanum tuberosum
Phvul.001G041000 Phaseolus vulgaris
Phvul.001G045500 Phaseolus vulgaris
Potri.001G041600 Populus trichocarpa
Potri.006G265500 Populus trichocarpa
Potri.006G266000 Populus trichocarpa
Potri.018G017100 Populus trichocarpa
Potri.018G017400 Populus trichocarpa
Pp3c25_9740 Physcomitrium patens
PRCOL_00002944 Prasinoderma coloniale
Prupe.1G395300 Prunus persica
Prupe.1G395800 Prunus persica
Prupe.1G395900 Prunus persica
Prupe.3G104000 Prunus persica
Psat6g026320 Pisum sativum
Psat6g026520 Pisum sativum
PSO017G5737 Papaver somniferum
PSO063G0417 Papaver somniferum
PSO063G2389 Papaver somniferum
PSO170G5755 Papaver somniferum
PSO782G0024 Papaver somniferum
QL02p018511 Quercus lobata
RcHm_v2.0_Chr2g0132271 Rosa chinensis
RcHm_v2.0_Chr6g0299271 Rosa chinensis
Rhsim02G0216300 Rhododendron simsii
Rhsim07G0166000 Rhododendron simsii
Sabra01G0028500 Salix brachista
Sabra06G0208100 Salix brachista
Sabra18G0020500 Salix brachista
Sabra18G0020800 Salix brachista
SalBow4G2996 Salvia bowleyana
Sc09g0010730 Simmondsia chinensis
Sc09g0010740 Simmondsia chinensis
Sed0023097 Sechium edule
Sed0025922 Sechium edule
SEGI_30251 Sequoiadendron giganteum
SGA_v2.0_scaffold147G36348 Striga asiatica
SGA_v2.0_scaffold74G24598 Striga asiatica
SHI21084 Sapria himalayana
SMO337G0062 Selaginella moellendorffii
Solyc03g117710.3 Solanum lycopersicum
Solyc06g068560.3 Solanum lycopersicum
Solyc08g006680.3 Solanum lycopersicum
Sopen03g036620 Solanum pennellii
Sopen06g025820 Solanum pennellii
Sopen08g002630 Solanum pennellii
Sp2g22470 Schrenkiella parvula
Sp5g34770 Schrenkiella parvula
Sp6g32640 Schrenkiella parvula
TAR383G0650 Trochodendron aralioides
TAR625G0073 Trochodendron aralioides
TAR636G2553 Trochodendron aralioides
THA.LOC104808170 Tarenaya hassleriana
THA.LOC104814984 Tarenaya hassleriana
Thecc.06G047400 Theobroma cacao
Thecc.09G014000 Theobroma cacao
Thecc.09G014100 Theobroma cacao
Thecc.09G014500 Theobroma cacao
Thhalv10004061m.g Eutrema salsugineum
Thhalv10013335m.g Eutrema salsugineum
Thhalv10018741m.g Eutrema salsugineum
TPR.G38866 Trifolium pratense
TPR.G38881 Trifolium pratense
TWI32G0005 Tripterygium wilfordii
TWI34G0002 Tripterygium wilfordii
TWI34G0838 Tripterygium wilfordii
TWI63G0004 Tripterygium wilfordii
unitig_32.g10934 Utricularia gibba
unitig_46.g18185 Utricularia gibba
vmacro05121 Vaccinium macrocarpon
vmacro11268 Vaccinium macrocarpon
VMungo0647G0140 Vigna mungo
VMungo0647G1114 Vigna mungo
Zm00001eb078370 Zea mays
Zm00001eb313290 Zea mays
Zm00001eb374450 Zea mays

User provided reference genes

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