Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p05340 Brassica napus
A02p05350 Brassica napus
A02p05390 Brassica napus
A02p05400 Brassica napus
A03p34470 Brassica napus
A03p68430 Brassica napus
A05p41970 Brassica napus
Aa31LG2G11840 Aethionema arabicum
Aa31LG5G16520 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5710 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2537 Anthoceros agrestis
Actinidia00748 Actinidia chinensis
Actinidia05708 Actinidia chinensis
Actinidia09143 Actinidia chinensis
Actinidia23499 Actinidia chinensis
Actinidia23629 Actinidia chinensis
Actinidia40160 Actinidia chinensis
AL1G65320 Arabidopsis lyrata
AL3G16870 Arabidopsis lyrata
AL6G30680 Arabidopsis lyrata
AL6G30710 Arabidopsis lyrata
Aqoxy2G03308 Aquilegia oxysepala
Aqoxy5G00513 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.275AW9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2HZ4P1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.50G1SM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.657ZKM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AGRZ5A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H4HKYZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NDF9MH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X2DQ6L Arachis hypogaea
AT1G54860 Arabidopsis thaliana
AT3G06035 Arabidopsis thaliana
AT5G19230 Arabidopsis thaliana
AT5G19240 Arabidopsis thaliana
AT5G19250 Arabidopsis thaliana
ATR0626G107 Amborella trichopoda
Atru.chr2.441 Acer truncatum
Atru.chr4.2528 Acer truncatum
AUR62000838 Chenopodium quinoa
AUR62005135 Chenopodium quinoa
AUR62038084 Chenopodium quinoa
AUR62038162 Chenopodium quinoa
AUR62038164 Chenopodium quinoa
BcaB04g19221 Brassica carinata
BcaB04g21320 Brassica carinata
BcaB05g23380 Brassica carinata
BcaB05g23381 Brassica carinata
BcaC01g04320 Brassica carinata
BcaC02g10740 Brassica carinata
BcaC02g10741 Brassica carinata
BcaC03g13653 Brassica carinata
BcaC03g13654 Brassica carinata
BcaC03g13656 Brassica carinata
BcaC03g13657 Brassica carinata
BcaC05g30065 Brassica carinata
BcaC06g31761 Brassica carinata
BcaC09g47873 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p02690 Brassica napus
BolC2t06947H Brassica oleracea
BolC2t06948H Brassica oleracea
BolC3t16476H Brassica oleracea
BolC4t24070H Brassica oleracea
BraA01t04454Z Brassica rapa
BraA02t05492Z Brassica rapa
BraA02t05493Z Brassica rapa
BraA03t12624Z Brassica rapa
C03p41930 Brassica napus
C04p25490 Brassica napus
C04p25500 Brassica napus
C05p61220 Brassica napus
CAN.G1077.19 Capsicum annuum
CAN.G69.15 Capsicum annuum
CANSAT78G0910 Cannabis sativa
CARHR056030 Cardamine hirsuta
CARHR080530 Cardamine hirsuta
CARHR193710 Cardamine hirsuta
CARHR193720 Cardamine hirsuta
CARHR193730 Cardamine hirsuta
Carub.0002s0857 Capsella rubella
Carub.0003s0546 Capsella rubella
Carub.0006s1757 Capsella rubella
Carub.0006s1758 Capsella rubella
Ca_09362_v3 Cicer arietinum L.
Ca_10106_v3 Cicer arietinum L.
Ca_10971_v3 Cicer arietinum L.
Ca_24374_v3 Cicer arietinum L.
Ca_24380_v3 Cicer arietinum L.
Cc03_g03340 Coffea canephora
CDE05G1691 Ceratophyllum demersum
CDE11G0147 Ceratophyllum demersum
CDE11G1246 Ceratophyllum demersum
Cfa006577 Carpinus fangiana
Cfa006578 Carpinus fangiana
Cfa015603 Carpinus fangiana
Ciclev10003231m.g Citrus clementina
Ciclev10007213m.g Citrus clementina
CiPaw.01G162300 Carya illinoinensis
CiPaw.02G094000 Carya illinoinensis
CiPaw.08G165700 Carya illinoinensis
CiPaw.08G165800 Carya illinoinensis
ClCG02G015890 Citrullus lanatus
ClCG03G016940 Citrullus lanatus
ClCG06G005930 Citrullus lanatus
COL.COLO4_05828 Corchorus olitorius
COL.COLO4_13483 Corchorus olitorius
Cpa.g.sc48.38 Carica papaya
Cpa.g.sc994.1 Carica papaya
CsaV3_1G038990 Cucumis sativus L.
CsaV3_2G005150 Cucumis sativus L.
CsaV3_2G005160 Cucumis sativus L.
CsaV3_2G005170 Cucumis sativus L.
CsaV3_6G038340 Cucumis sativus L.
CSS0011589 Camellia sinensis var. sinensis
DCAR_000459 Daucus carota
DCAR_002400 Daucus carota
DCAR_003325 Daucus carota
DCAR_030613 Daucus carota
Dinv23950 Davidia involucrata
Dinv23951 Davidia involucrata
Dinv32943 Davidia involucrata
Dinv44499 Davidia involucrata
Duzib128G0265 Durio zibethinus
Duzib151G1141 Durio zibethinus
EL10Ac4g09342 Beta vulgaris
EL10As3g23346 Beta vulgaris
Eucgr.B01107 Eucalyptus grandis
Eucgr.L00601 Eucalyptus grandis
FAN02G0015 Fragaria x ananassa
FAN05G1338 Fragaria x ananassa
FAN05G2900 Fragaria x ananassa
FAN07G0935 Fragaria x ananassa
FAN09G3016 Fragaria x ananassa
FAN12G2734 Fragaria x ananassa
FAN14G1645 Fragaria x ananassa
FAN14G2749 Fragaria x ananassa
FAN17G0848 Fragaria x ananassa
FAN22G2155 Fragaria x ananassa
FvH4_4g14890 Fragaria vesca
FvH4_6g05670 Fragaria vesca
Glyma.01G239900 Glycine max
Glyma.03G238700 Glycine max
Glyma.10G155200 Glycine max
Glyma.10G251000 Glycine max
Glyma.11G003800 Glycine max
Glyma.19G236100 Glycine max
Glyma.20G142700 Glycine max
Glyma.20G233100 Glycine max
Gohir.A02G029500 Gossypium hirsutum
Gohir.A09G055400 Gossypium hirsutum
Gohir.A13G107300 Gossypium hirsutum
Gohir.D02G037300 Gossypium hirsutum
Gohir.D09G054300 Gossypium hirsutum
Gohir.D13G110500 Gossypium hirsutum
Gorai.005G041200 Gossypium raimondii
Gorai.006G052800 Gossypium raimondii
Gorai.013G123800 Gossypium raimondii
GSVIVG01000039001 Vitis vinifera
GSVIVG01017912001 Vitis vinifera
HanXRQChr04g0101271 Helianthus annuus
HanXRQChr04g0101291 Helianthus annuus
HanXRQChr09g0250291 Helianthus annuus
HanXRQChr09g0259661 Helianthus annuus
Haze_00942 Corylus avellana
Haze_04205 Corylus avellana
Hma1.2p1_0995F.1_g245730 Hydrangea macrophylla
HPP92_027820 Vanilla planifolia
Hund07060 Selenicereus undatus
Hund12172 Selenicereus undatus
Hund21786 Selenicereus undatus
Lalb_Chr02g0148291 Lupinus albus
Lalb_Chr06g0164821 Lupinus albus
Lalb_Chr09g0319691 Lupinus albus
Lalb_Chr18g0045571 Lupinus albus
Lj1g0004318 Lotus japonicus
Lj1g0014474 Lotus japonicus
Lj5g0002149 Lotus japonicus
Lj5g0011469 Lotus japonicus
Lj6A595T59 Lonicera japonica
Lj9C27T3 Lonicera japonica
Lsat_1_v5_gn_4_139381 Lactuca sativa
Lsat_1_v5_gn_7_66480 Lactuca sativa
Manes.08G121700 Manihot esculenta
Manes.08G121800 Manihot esculenta
Manes.08G121950 Manihot esculenta
Manes.08G122100 Manihot esculenta
Manes.09G165901 Manihot esculenta
Manes.09G166001 Manihot esculenta
Manes.15G025500 Manihot esculenta
Mapoly0009s0195 Marchantia polymorpha
MD04G1206600 Malus domestica
MD04G1206700 Malus domestica
MD12G1220400 Malus domestica
MD12G1220500 Malus domestica
MD13G1186300 Malus domestica
MD16G1187000 Malus domestica
Medtr1g082770 Medicago truncatula
Medtr1g082790 Medicago truncatula
Medtr1g082830 Medicago truncatula
Medtr1g105305 Medicago truncatula
Medtr5g005710 Medicago truncatula
Medtr7g113640 Medicago truncatula
MELO3C004276.2 Cucumis melo
MELO3C004277.2 Cucumis melo
MELO3C014498.2 Cucumis melo
Migut.N00160 Erythranthe guttata
Migut.N02001 Erythranthe guttata
MSTRG.21837 Avicennia marina
MSTRG.24753 Avicennia marina
Nitab4.5_0000630g0100 Nicotiana tabacum
Nitab4.5_0000968g0020 Nicotiana tabacum
Nitab4.5_0005388g0040 Nicotiana tabacum
Nitab4.5_0008677g0030 Nicotiana tabacum
Nn1g02204 Nelumbo nucifera
Nn4g26233 Nelumbo nucifera
Oeu029690.1 Olea europaea
Os07g0645000 Oryza sativa ssp. japonica
Peaxi162Scf00037g00024 Petunia axillaris
Peaxi162Scf00071g00623 Petunia axillaris
Peaxi162Scf01336g00020 Petunia axillaris
PGR031G3063 Punica granatum
PGR083G2719 Punica granatum
PGR142G2917 Punica granatum
PGSC0003DMG400028587 Solanum tuberosum
PGSC0003DMG401008996 Solanum tuberosum
Phvul.002G047800 Phaseolus vulgaris
Phvul.006G092611 Phaseolus vulgaris
Phvul.006G092700 Phaseolus vulgaris
Phvul.007G053500 Phaseolus vulgaris
Phvul.007G180700 Phaseolus vulgaris
Potri.005G034200 Populus trichocarpa
Potri.005G034300 Populus trichocarpa
Potri.005G034400 Populus trichocarpa
Potri.008G195000 Populus trichocarpa
Potri.010G033400 Populus trichocarpa
Potri.013G023701 Populus trichocarpa
Potri.013G023801 Populus trichocarpa
Pp3c16_8400 Physcomitrium patens
Prupe.1G154000 Prunus persica
Prupe.6G327200 Prunus persica
Prupe.6G327300 Prunus persica
Psat3g010680 Pisum sativum
Psat4g211040 Pisum sativum
Psat6g149600 Pisum sativum
Psat6g209320 Pisum sativum
Psat7g044800 Pisum sativum
Psat7g044840 Pisum sativum
PSO170G5605 Papaver somniferum
PSO302G0238 Papaver somniferum
QL03p006519 Quercus lobata
QL03p006535 Quercus lobata
QL03p006614 Quercus lobata
QL03p006663 Quercus lobata
QL03p006674 Quercus lobata
QL03p006735 Quercus lobata
QL03p006863 Quercus lobata
QL03p006875 Quercus lobata
QL06p003670 Quercus lobata
QL09p049486 Quercus lobata
RcHm_v2.0_Chr3g0454541 Rosa chinensis
RcHm_v2.0_Chr3g0454551 Rosa chinensis
RcHm_v2.0_Chr4g0417311 Rosa chinensis
Rhsim07G0182100 Rhododendron simsii
Sabra05G0036100 Salix brachista
Sabra08G0148200 Salix brachista
Sabra10G0031000 Salix brachista
Sabra13G0025500 Salix brachista
SalBow2G0644 Salvia bowleyana
SalBow3G3343 Salvia bowleyana
SalBow5G1342 Salvia bowleyana
SalBow5G5354 Salvia bowleyana
Sc06g0003360 Simmondsia chinensis
Sed0001954 Sechium edule
Sed0002984 Sechium edule
Sed0004357 Sechium edule
Sed0023113 Sechium edule
Sed0023376 Sechium edule
SGA_v2.0_scaffold10G05114 Striga asiatica
SMO196G0212 Selaginella moellendorffii
Solyc01g079780.3 Solanum lycopersicum
Solyc01g098860.3 Solanum lycopersicum
Sopen01g031540 Solanum pennellii
Sopen01g042400 Solanum pennellii
Sp3g04980 Schrenkiella parvula
Sp6g25160 Schrenkiella parvula
SpUn0002_0640 Schrenkiella parvula
TAR365G0191 Trochodendron aralioides
TAR636G1168 Trochodendron aralioides
THA.LOC104802757 Tarenaya hassleriana
THA.LOC104805872 Tarenaya hassleriana
Thecc.04G225600 Theobroma cacao
Thecc.05G304800 Theobroma cacao
Thhalv10014774m.g Eutrema salsugineum
Thhalv10021555m.g Eutrema salsugineum
Thhalv10023896m.g Eutrema salsugineum
TPR.G37889 Trifolium pratense
TPR.G6075 Trifolium pratense
TPR.G7479 Trifolium pratense
TWI09G0344 Tripterygium wilfordii
TWI09G1072 Tripterygium wilfordii
TWI12G0807 Tripterygium wilfordii
TWI53G1258 Tripterygium wilfordii
TWI73G0274 Tripterygium wilfordii
unitig_0.g2372 Utricularia gibba
vmacro02565 Vaccinium macrocarpon
vmacro23126 Vaccinium macrocarpon
VMungo0540G1674 Vigna mungo
VMungo0720G1253 Vigna mungo
VMungo0720G2803 Vigna mungo
VMungo1215G3015 Vigna mungo
Zm00001eb110400 Zea mays
Zm00001eb231970 Zea mays

User provided reference genes

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