Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00260 Brassica napus
A03p24900 Brassica napus
A06p48680 Brassica napus
A07p06890 Brassica napus
A07p28840 Brassica napus
A07p40970 Brassica napus
A08p23800 Brassica napus
A09p58200 Brassica napus
Aa31LG4G5610 Aethionema arabicum
Aa31LG6G16120 Aethionema arabicum
Aa31LG7G15030 Aethionema arabicum
Actinidia00547 Actinidia chinensis
Actinidia02230 Actinidia chinensis
Actinidia27880 Actinidia chinensis
Actinidia29809 Actinidia chinensis
Actinidia37994 Actinidia chinensis
Ah.01g019140 Amaranthus hybridus
Ah.05g180840 Amaranthus hybridus
AL1G32400 Arabidopsis lyrata
AL2G35350 Arabidopsis lyrata
AL4G10680 Arabidopsis lyrata
AL7G11080 Arabidopsis lyrata
Aqoxy5G01555 Aquilegia oxysepala
Aqoxy6G01192 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0KG03L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7PY5NM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ETV3I7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I0VE2Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PIWT4D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V5R7Y7 Arachis hypogaea
AT1G19680 Arabidopsis thaliana
AT1G75400 Arabidopsis thaliana
AT2G21500 Arabidopsis thaliana
AT4G39140 Arabidopsis thaliana
ATR0585G006 Amborella trichopoda
Atru.chr13.410 Acer truncatum
Atru.chr13.411 Acer truncatum
Atru.chr5.3080 Acer truncatum
AUR62011288 Chenopodium quinoa
AUR62014483 Chenopodium quinoa
AUR62016771 Chenopodium quinoa
AUR62034518 Chenopodium quinoa
BcaB03g11583 Brassica carinata
BcaB03g12245 Brassica carinata
BcaB07g33129 Brassica carinata
BcaC01g00284 Brassica carinata
BcaC03g17098 Brassica carinata
BcaC03g17297 Brassica carinata
BcaC07g41149 Brassica carinata
BcaC08g45581 Brassica carinata
BcaC08g47013 Brassica carinata
BcaC08g47357 Brassica carinata
BcaNung01277 Brassica carinata
BcaNung02355 Brassica carinata
BcaNung03302 Brassica carinata
BolC1t00043H Brassica oleracea
BolC3t20020H Brassica oleracea
BolC6t38384H Brassica oleracea
BolC6t39974H Brassica oleracea
BolC7t46746H Brassica oleracea
BolC8t51709H Brassica oleracea
BraA01t00033Z Brassica rapa
BraA06t27735Z Brassica rapa
BraA07t30527Z Brassica rapa
BraA07t31635Z Brassica rapa
BraA08t34332Z Brassica rapa
BraA09t39840Z Brassica rapa
BraA09t41208Z Brassica rapa
C01p00370 Brassica napus
C02p52420 Brassica napus
C03p77630 Brassica napus
C06p32620 Brassica napus
C06p49400 Brassica napus
C07p63350 Brassica napus
C08p41480 Brassica napus
CAN.G104.3 Capsicum annuum
CANSAT11G1577 Cannabis sativa
CARHR020200 Cardamine hirsuta
CARHR068780 Cardamine hirsuta
CARHR068800 Cardamine hirsuta
CARHR112420 Cardamine hirsuta
CARHR247610 Cardamine hirsuta
Carub.0001s1922 Capsella rubella
Carub.0002s2227 Capsella rubella
Carub.0004s0054 Capsella rubella
Carub.0007s0102 Capsella rubella
Ca_02079_v3 Cicer arietinum L.
Ca_13379_v3 Cicer arietinum L.
Ca_15349_v3 Cicer arietinum L.
Ca_23905_v3 Cicer arietinum L.
Ca_30049_v3 Cicer arietinum L.
Ca_30246_v3 Cicer arietinum L.
Ca_31118_v3 Cicer arietinum L.
Cc02_g17280 Coffea canephora
CDE05G1933 Ceratophyllum demersum
CDE11G0947 Ceratophyllum demersum
Cfa005056 Carpinus fangiana
Cfa013874 Carpinus fangiana
Ciclev10001121m.g Citrus clementina
Ciclev10028499m.g Citrus clementina
CiPaw.05G069700 Carya illinoinensis
CiPaw.06G132600 Carya illinoinensis
CiPaw.06G132700 Carya illinoinensis
CiPaw.07G157000 Carya illinoinensis
CiPaw.08G060600 Carya illinoinensis
ClCG02G004780 Citrullus lanatus
ClCG11G004160 Citrullus lanatus
COL.COLO4_25988 Corchorus olitorius
COL.COLO4_26244 Corchorus olitorius
Cpa.g.sc106.6 Carica papaya
CsaV3_2G015010 Cucumis sativus L.
CsaV3_7G000130 Cucumis sativus L.
CSS0000665 Camellia sinensis var. sinensis
CSS0022750 Camellia sinensis var. sinensis
CSS0027579 Camellia sinensis var. sinensis
CSS0034824 Camellia sinensis var. sinensis
CSS0044566 Camellia sinensis var. sinensis
DCAR_023013 Daucus carota
DCAR_028968 Daucus carota
Dinv23489 Davidia involucrata
Dinv31786 Davidia involucrata
Dinv39454 Davidia involucrata
Dinv42039 Davidia involucrata
Duzib041G0630 Durio zibethinus
Duzib052G0846 Durio zibethinus
Duzib093G0436 Durio zibethinus
Duzib116G0230 Durio zibethinus
Duzib132G1074 Durio zibethinus
Duzib248G0497 Durio zibethinus
ECA234G4758 Erigeron canadensis
ECA236G2631 Erigeron canadensis
EL10Ac1g00615 Beta vulgaris
Eucgr.F01862 Eucalyptus grandis
Eucgr.G01695 Eucalyptus grandis
FAN15G3647 Fragaria x ananassa
FAN20G0016 Fragaria x ananassa
FAN24G3524 Fragaria x ananassa
FAN27G1087 Fragaria x ananassa
FvH4_2g09590 Fragaria vesca
FvH4_7g07801 Fragaria vesca
Glyma.04G010000 Glycine max
Glyma.04G029500 Glycine max
Glyma.06G009900 Glycine max
Glyma.06G029500 Glycine max
Glyma.12G235700 Glycine max
Glyma.13G201200 Glycine max
Glyma.14G071300 Glycine max
Glyma.17G253300 Glycine max
Gohir.A03G079950 Gossypium hirsutum
Gohir.A05G190700 Gossypium hirsutum
Gohir.A12G042500 Gossypium hirsutum
Gohir.A13G032500 Gossypium hirsutum
Gohir.D02G096100 Gossypium hirsutum
Gohir.D05G194100 Gossypium hirsutum
Gohir.D12G029800 Gossypium hirsutum
Gohir.D13G030700 Gossypium hirsutum
Gorai.005G109800 Gossypium raimondii
Gorai.008G030700 Gossypium raimondii
Gorai.009G199100 Gossypium raimondii
Gorai.013G034900 Gossypium raimondii
GSVIVG01009771001 Vitis vinifera
GSVIVG01023822001 Vitis vinifera
HanXRQChr10g0307031 Helianthus annuus
HanXRQChr12g0374311 Helianthus annuus
HanXRQChr16g0505391 Helianthus annuus
Haze_02327 Corylus avellana
Haze_22554 Corylus avellana
Hma1.2p1_0851F.1_g228430 Hydrangea macrophylla
HPP92_008327 Vanilla planifolia
Hund00241 Selenicereus undatus
Hund06252 Selenicereus undatus
Hund26894 Selenicereus undatus
Lalb_Chr01g0007971 Lupinus albus
Lalb_Chr03g0032911 Lupinus albus
Lalb_Chr14g0369511 Lupinus albus
Lalb_Chr19g0132301 Lupinus albus
Lalb_Chr22g0354581 Lupinus albus
Lalb_Chr24g0398881 Lupinus albus
Lj1g0003151 Lotus japonicus
Lj1g0004522 Lotus japonicus
Lj3g0000522 Lotus japonicus
Lj5A193T105 Lonicera japonica
Lj5g0008104 Lotus japonicus
Lj9C377G11 Lonicera japonica
Lsat_1_v5_gn_5_120501 Lactuca sativa
Lsat_1_v5_gn_7_91580 Lactuca sativa
Manes.04G087266 Manihot esculenta
Manes.05G155200 Manihot esculenta
Manes.11G091600 Manihot esculenta
Manes.18G021006 Manihot esculenta
Mapoly0115s0020 Marchantia polymorpha
MBI10_g00754_MAGBIO Magnolia biondii
MBI16_g36842_MAGBIO Magnolia biondii
MD03G1146100 Malus domestica
MD05G1061300 Malus domestica
MD10G1069100 Malus domestica
Medtr1g022505 Medicago truncatula
Medtr3g112230 Medicago truncatula
Medtr3g117180 Medicago truncatula
Medtr4g036765 Medicago truncatula
Medtr8g037750 Medicago truncatula
MELO3C013445.2 Cucumis melo
MELO3C023321.2 Cucumis melo
Migut.B00210 Erythranthe guttata
Migut.N01260 Erythranthe guttata
MSTRG.16824 Avicennia marina
MSTRG.20062 Avicennia marina
MSTRG.5407 Avicennia marina
Nitab4.5_0001317g0180 Nicotiana tabacum
Nitab4.5_0003234g0130 Nicotiana tabacum
Nitab4.5_0005128g0060 Nicotiana tabacum
Nitab4.5_0005796g0040 Nicotiana tabacum
Nn1g05809 Nelumbo nucifera
Nn5g29705 Nelumbo nucifera
Oeu003737.1 Olea europaea
Oeu003739.1 Olea europaea
Oeu020732.1 Olea europaea
Oeu046146.5 Olea europaea
Oeu055612.1 Olea europaea
Oeu061223.1 Olea europaea
Os01g0260950 Oryza sativa ssp. japonica
Os01g0261100 Oryza sativa ssp. japonica
Peaxi162Scf00003g00728 Petunia axillaris
Peaxi162Scf00016g00428 Petunia axillaris
PGR031G0126 Punica granatum
PGR042G3147 Punica granatum
PGSC0003DMG400010975 Solanum tuberosum
PGSC0003DMG400025731 Solanum tuberosum
PGSC0003DMG400038651 Solanum tuberosum
Phvul.001G011700 Phaseolus vulgaris
Phvul.009G005500 Phaseolus vulgaris
Phvul.009G060800 Phaseolus vulgaris
Phvul.011G210200 Phaseolus vulgaris
Potri.002G031600 Populus trichocarpa
Potri.004G158400 Populus trichocarpa
Potri.005G231500 Populus trichocarpa
Potri.009G120000 Populus trichocarpa
Prupe.8G091100 Prunus persica
Psat0s4255g0080 Pisum sativum
Psat3g100800 Pisum sativum
Psat4g063160 Pisum sativum
Psat4g148120 Pisum sativum
Psat5g005480 Pisum sativum
Psat5g015600 Pisum sativum
Psat6g009640 Pisum sativum
PSO731G0139 Papaver somniferum
PSO764G0313 Papaver somniferum
QL02p009591 Quercus lobata
QL11p044804 Quercus lobata
QL11p045220 Quercus lobata
RcHm_v2.0_Chr5g0045191 Rosa chinensis
RcHm_v2.0_Chr6g0265921 Rosa chinensis
Rhsim05G0071200 Rhododendron simsii
Rhsim07G0242200 Rhododendron simsii
Rhsim07G0242800 Rhododendron simsii
Rhsim11G0180300 Rhododendron simsii
Sabra02G0025700 Salix brachista
Sabra04G0105700 Salix brachista
Sabra05G0178700 Salix brachista
Sabra09G0092300 Salix brachista
Sabra09G0092400 Salix brachista
SalBow3G1018 Salvia bowleyana
SalBow6G6824 Salvia bowleyana
Sc08g0000650 Simmondsia chinensis
Sc18g0005110 Simmondsia chinensis
Sed0002025 Sechium edule
Sed0016001 Sechium edule
Sed0017187 Sechium edule
Sed0021711 Sechium edule
SEGI_07137 Sequoiadendron giganteum
SEGI_36029 Sequoiadendron giganteum
SGA_v2.0_scaffold32G13191 Striga asiatica
SGA_v2.0_scaffold58G20503 Striga asiatica
SHI08121 Sapria himalayana
SHI08122 Sapria himalayana
SHI49408 Sapria himalayana
Solyc01g109910.4 Solanum lycopersicum
Solyc10g054030.2 Solanum lycopersicum
Sopen01g052100 Solanum pennellii
Sopen10g023880 Solanum pennellii
Sp4g00660 Schrenkiella parvula
Sp5g30540 Schrenkiella parvula
Sp7g36680 Schrenkiella parvula
TAR381G1125 Trochodendron aralioides
THA.LOC104804124 Tarenaya hassleriana
THA.LOC104807750 Tarenaya hassleriana
Thecc.02G080600 Theobroma cacao
Thecc.08G033300 Theobroma cacao
Thhalv10000174m.g Eutrema salsugineum
Thhalv10018531m.g Eutrema salsugineum
Thhalv10025282m.g Eutrema salsugineum
TPR.G12449 Trifolium pratense
TPR.G1857 Trifolium pratense
TPR.G30489 Trifolium pratense
TPR.G32172 Trifolium pratense
TWI12G0710 Tripterygium wilfordii
TWI31G0979 Tripterygium wilfordii
TWI56G0753 Tripterygium wilfordii
TWI79G0980 Tripterygium wilfordii
unitig_0.g59 Utricularia gibba
unitig_21.g20788 Utricularia gibba
unitig_60.g25445 Utricularia gibba
unitig_744.g24256 Utricularia gibba
vmacro02079 Vaccinium macrocarpon
vmacro04299 Vaccinium macrocarpon
vmacro17461 Vaccinium macrocarpon
vmacro17462 Vaccinium macrocarpon
vmacro22851 Vaccinium macrocarpon
VMungo0540G0729 Vigna mungo
VMungo0647G0749 Vigna mungo
VMungo0647G1929 Vigna mungo
VMungo1127G1642 Vigna mungo
VMungo1309G2485 Vigna mungo
VMungo1309G2825 Vigna mungo
Zm00001eb127990 Zea mays
Zm00001eb333340 Zea mays

User provided reference genes

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