Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p14630 Brassica napus
A07p04970 Brassica napus
A08p30340 Brassica napus
Aa31LG7G3340 Aethionema arabicum
Aa31LG8G17680 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4091 Anthoceros agrestis
Actinidia04800 Actinidia chinensis
Actinidia04801 Actinidia chinensis
Actinidia09899 Actinidia chinensis
Actinidia10446 Actinidia chinensis
Actinidia12453 Actinidia chinensis
Actinidia12736 Actinidia chinensis
Ah.02g114220 Amaranthus hybridus
Ah.08g210580 Amaranthus hybridus
Ah.11g047460 Amaranthus hybridus
Ah.15g093310 Amaranthus hybridus
AL1G31020 Arabidopsis lyrata
AL3G53920 Arabidopsis lyrata
Aqoxy1G02796 Aquilegia oxysepala
Aqoxy1G03533 Aquilegia oxysepala
Aqoxy3G03728 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.10S551 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.11TW0N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G66C80 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K1MIDT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T2NJE2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U5XLWX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WQLB21 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YY2DMA Arachis hypogaea
AT1G18580 Arabidopsis thaliana
AT2G20810 Arabidopsis thaliana
ATR0693G314 Amborella trichopoda
ATR0827G062 Amborella trichopoda
Atru.BG.45.p Acer truncatum
Atru.chr9.480 Acer truncatum
AUR62032133 Chenopodium quinoa
AUR62037381 Chenopodium quinoa
AUR62037612 Chenopodium quinoa
AUR62039671 Chenopodium quinoa
BcaB03g12989 Brassica carinata
BcaB03g14495 Brassica carinata
BcaB03g16330 Brassica carinata
BcaB07g31876 Brassica carinata
BcaC05g25753 Brassica carinata
BcaC06g36088 Brassica carinata
BcaC07g38920 Brassica carinata
BcaC07g38921 Brassica carinata
BolC5t30385H Brassica oleracea
BolC7t41215H Brassica oleracea
BolC8t49497H Brassica oleracea
BraA06t24590Z Brassica rapa
BraA07t28290Z Brassica rapa
BraA08t34967Z Brassica rapa
C05p16840 Brassica napus
C06p19710 Brassica napus
C07p07980 Brassica napus
C08p18720 Brassica napus
C08p43240 Brassica napus
C08p43250 Brassica napus
CAN.G1592.7 Capsicum annuum
CAN.G657.11 Capsicum annuum
CANSAT64G1153 Cannabis sativa
CANSAT80G1204 Cannabis sativa
CARHR019200 Cardamine hirsuta
CARHR046090 Cardamine hirsuta
CARHR111490 Cardamine hirsuta
CARHR283700 Cardamine hirsuta
Carub.0001s1821 Capsella rubella
Carub.0003s3538 Capsella rubella
Ca_02647_v3 Cicer arietinum L.
Ca_02803_v3 Cicer arietinum L.
Ca_21758_v3 Cicer arietinum L.
CBR_g11196 Chara braunii
CBR_g11198 Chara braunii
Cc04_g16260 Coffea canephora
Cc05_g06420 Coffea canephora
CDE02G2244 Ceratophyllum demersum
CDE05G2730 Ceratophyllum demersum
CDE06G2256 Ceratophyllum demersum
CDE07G0809 Ceratophyllum demersum
CDE07G1393 Ceratophyllum demersum
Cfa014549 Carpinus fangiana
Cfa019368 Carpinus fangiana
Ciclev10014869m.g Citrus clementina
Ciclev10019659m.g Citrus clementina
CiPaw.03G170400 Carya illinoinensis
CiPaw.04G122900 Carya illinoinensis
CiPaw.11G056600 Carya illinoinensis
ClCG02G017360 Citrullus lanatus
ClCG06G015460 Citrullus lanatus
COL.COLO4_34347 Corchorus olitorius
Cpa.g.sc3.244 Carica papaya
Cpa.g.sc9.231 Carica papaya
CsaV3_1G003360 Cucumis sativus L.
CsaV3_7G021920 Cucumis sativus L.
CSS0011873 Camellia sinensis var. sinensis
CSS0019649 Camellia sinensis var. sinensis
CSS0027685 Camellia sinensis var. sinensis
CSS0033936 Camellia sinensis var. sinensis
CSS0034579 Camellia sinensis var. sinensis
CSS0034827 Camellia sinensis var. sinensis
DCAR_006340 Daucus carota
DCAR_009729 Daucus carota
DCAR_019196 Daucus carota
Dinv08345 Davidia involucrata
Dinv15479 Davidia involucrata
Dinv17455 Davidia involucrata
Dinv23703 Davidia involucrata
Dinv31040 Davidia involucrata
Dinv31060 Davidia involucrata
Duzib068G1110 Durio zibethinus
Duzib084G0508 Durio zibethinus
Duzib132G0554 Durio zibethinus
Duzib205G1125 Durio zibethinus
Duzib248G1245 Durio zibethinus
Duzib248G1664 Durio zibethinus
ECA246G5124 Erigeron canadensis
ECA247G3027 Erigeron canadensis
EL10Ac5g11186 Beta vulgaris
EL10Ac9g20671 Beta vulgaris
Eucgr.B00636 Eucalyptus grandis
FAN02G1873 Fragaria x ananassa
FAN05G5002 Fragaria x ananassa
FAN08G1672 Fragaria x ananassa
FAN09G1773 Fragaria x ananassa
FAN09G3348 Fragaria x ananassa
FAN13G1276 Fragaria x ananassa
FAN14G3567 Fragaria x ananassa
FAN18G0286 Fragaria x ananassa
FvH4_5g13450 Fragaria vesca
FvH4_6g44800 Fragaria vesca
Glyma.04G159200 Glycine max
Glyma.05G018500 Glycine max
Glyma.06G205900 Glycine max
Glyma.12G201500 Glycine max
Glyma.13G300700 Glycine max
Glyma.17G081400 Glycine max
Gohir.A04G105500 Gossypium hirsutum
Gohir.A11G033800 Gossypium hirsutum
Gohir.D04G145300 Gossypium hirsutum
Gohir.D11G037200 Gossypium hirsutum
Gorai.007G040000 Gossypium raimondii
Gorai.012G131400 Gossypium raimondii
GSVIVG01008143001 Vitis vinifera
GSVIVG01030583001 Vitis vinifera
HanXRQChr02g0042971 Helianthus annuus
HanXRQChr04g0110021 Helianthus annuus
HanXRQChr09g0270291 Helianthus annuus
HanXRQChr17g0542481 Helianthus annuus
HanXRQChr17g0559371 Helianthus annuus
Haze_07760 Corylus avellana
Haze_13094 Corylus avellana
Hma1.2p1_0060F.1_g032760 Hydrangea macrophylla
HPP92_007736 Vanilla planifolia
Hund02545 Selenicereus undatus
Hund22737 Selenicereus undatus
Lalb_Chr12g0197351 Lupinus albus
Lalb_Chr13g0302701 Lupinus albus
Lalb_Chr14g0366651 Lupinus albus
Lalb_Chr22g0356371 Lupinus albus
Lalb_Chr24g0399821 Lupinus albus
Lj1g0013004 Lotus japonicus
Lj1P853T60 Lonicera japonica
Lj2g0016805 Lotus japonicus
Lj3g0009333 Lotus japonicus
Lj4g0019642 Lotus japonicus
Lj5A136T88 Lonicera japonica
Lj8A116G74 Lonicera japonica
Lj8C116T20 Lonicera japonica
Lj8P160T36 Lonicera japonica
Lj9A438T57 Lonicera japonica
Lsat_1_v5_gn_1_15261 Lactuca sativa
Lsat_1_v5_gn_3_39241 Lactuca sativa
Lsat_1_v5_gn_4_114580 Lactuca sativa
Manes.06G081500 Manihot esculenta
Manes.14G088700 Manihot esculenta
Manes.16G044600 Manihot esculenta
Mapoly0036s0088 Marchantia polymorpha
Mapoly0065s0017 Marchantia polymorpha
MBI13_g31537_MAGBIO Magnolia biondii
MD06G1204900 Malus domestica
MD09G1093100 Malus domestica
MD14G1216000 Malus domestica
MD17G1083200 Malus domestica
Medtr2g006790 Medicago truncatula
Medtr2g015550 Medicago truncatula
Medtr2g461670 Medicago truncatula
Medtr4g109890 Medicago truncatula
MELO3C013154.2 Cucumis melo
MELO3C017247.2 Cucumis melo
Migut.D01619 Erythranthe guttata
Migut.M00301 Erythranthe guttata
MSTRG.1971 Avicennia marina
MSTRG.4493 Avicennia marina
MSTRG.9584 Avicennia marina
Nitab4.5_0000174g0090 Nicotiana tabacum
Nitab4.5_0001797g0030 Nicotiana tabacum
Nitab4.5_0002041g0020 Nicotiana tabacum
Nitab4.5_0002467g0040 Nicotiana tabacum
Nitab4.5_0004674g0010 Nicotiana tabacum
Nitab4.5_0008120g0030 Nicotiana tabacum
Nitab4.5_0026130g0010 Nicotiana tabacum
Nn1g09366 Nelumbo nucifera
Nn3g17523 Nelumbo nucifera
Nn4g23525 Nelumbo nucifera
Nn4g26660 Nelumbo nucifera
Oeu010941.1 Olea europaea
Oeu014426.1 Olea europaea
Oeu025508.1 Olea europaea
Oeu044772.1 Olea europaea
Oeu058405.1 Olea europaea
Os03g0413400 Oryza sativa ssp. japonica
Os04g0636100 Oryza sativa ssp. japonica
Peaxi162Scf00017g03286 Petunia axillaris
Peaxi162Scf00066g00168 Petunia axillaris
Peaxi162Scf00365g00112 Petunia axillaris
Peaxi162Scf01184g00143 Petunia axillaris
PGR042G0605 Punica granatum
PGR044G1165 Punica granatum
PGR083G2066 Punica granatum
PGSC0003DMG400024623 Solanum tuberosum
PGSC0003DMG400024824 Solanum tuberosum
Phvul.003G182500 Phaseolus vulgaris
Phvul.005G107500 Phaseolus vulgaris
Phvul.009G203500 Phaseolus vulgaris
Phvul.011G111900 Phaseolus vulgaris
Potri.012G064500 Populus trichocarpa
Potri.013G146200 Populus trichocarpa
Potri.015G060800 Populus trichocarpa
Potri.019G108900 Populus trichocarpa
Pp3c5_2360 Physcomitrium patens
Pp3c6_24570 Physcomitrium patens
Prupe.3G232100 Prunus persica
Prupe.5G208900 Prunus persica
Prupe.5G209400 Prunus persica
Psat1g027400 Pisum sativum
Psat1g062800 Pisum sativum
Psat1g126600 Pisum sativum
Psat4g046160 Pisum sativum
PSO063G5889 Papaver somniferum
PSO541G4487 Papaver somniferum
PSO675G2533 Papaver somniferum
PSO782G3479 Papaver somniferum
QL08p037441 Quercus lobata
QL10p020421 Quercus lobata
RcHm_v2.0_Chr2g0161971 Rosa chinensis
RcHm_v2.0_Chr7g0183671 Rosa chinensis
Rhsim06G0150500 Rhododendron simsii
Rhsim06G0192800 Rhododendron simsii
Rhsim08G0141400 Rhododendron simsii
Sabra12G0045600 Salix brachista
Sabra13G0118000 Salix brachista
Sabra15G0086000 Salix brachista
Sabra19G0115300 Salix brachista
Sabra19G0138100 Salix brachista
SalBow5G2564 Salvia bowleyana
SalBow7G3939 Salvia bowleyana
Sc12g0002720 Simmondsia chinensis
Sc12g0003970 Simmondsia chinensis
Sc12g0006900 Simmondsia chinensis
Sed0000637 Sechium edule
Sed0015454 Sechium edule
Sed0025066 Sechium edule
Sed0027692 Sechium edule
SEGI_27142 Sequoiadendron giganteum
SEGI_35962 Sequoiadendron giganteum
SGA_v2.0_scaffold25G10947 Striga asiatica
SGA_v2.0_scaffold313G48288 Striga asiatica
SGA_v2.0_scaffold70G23473 Striga asiatica
SHI10469 Sapria himalayana
SHI10477 Sapria himalayana
SHI17430 Sapria himalayana
SMO117G0363 Selaginella moellendorffii
Solyc03g114810.3 Solanum lycopersicum
Solyc04g064490.3 Solanum lycopersicum
Sopen03g033890 Solanum pennellii
Sopen04g026430 Solanum pennellii
Sp1g16540 Schrenkiella parvula
Sp1g16550 Schrenkiella parvula
TAR126G0003 Trochodendron aralioides
TAR624G0384 Trochodendron aralioides
TAR627G0067 Trochodendron aralioides
TAR629G0285 Trochodendron aralioides
TAR629G1653 Trochodendron aralioides
TAR629G1706 Trochodendron aralioides
TAR636G1212 Trochodendron aralioides
TAR726G0001 Trochodendron aralioides
THA.LOC104812114 Tarenaya hassleriana
THA.LOC104813892 Tarenaya hassleriana
THA.LOC104825522 Tarenaya hassleriana
Thecc.02G172400 Theobroma cacao
Thecc.03G107200 Theobroma cacao
Thhalv10001954m.g Eutrema salsugineum
Thhalv10007318m.g Eutrema salsugineum
TPR.G12511 Trifolium pratense
TPR.G14361 Trifolium pratense
TPR.G2031 Trifolium pratense
TWI15G0251 Tripterygium wilfordii
TWI18G1242 Tripterygium wilfordii
TWI36G1523 Tripterygium wilfordii
TWI75G0948 Tripterygium wilfordii
TWI81G0922 Tripterygium wilfordii
unitig_26.g9671 Utricularia gibba
vmacro11812 Vaccinium macrocarpon
vmacro12264 Vaccinium macrocarpon
vmacro17633 Vaccinium macrocarpon
vmacro17634 Vaccinium macrocarpon
VMungo1080G1753 Vigna mungo
VMungo1127G1171 Vigna mungo
VMungo1215G1408 Vigna mungo
VMungo1309G1867 Vigna mungo
Zm00001eb020040 Zea mays
Zm00001eb069220 Zea mays
Zm00001eb144690 Zea mays
Zm00001eb212280 Zea mays
Zm00001eb277430 Zea mays
Zm00001eb393040 Zea mays
Zm00001eb431710 Zea mays

User provided reference genes

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