Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p18640 Brassica napus
A03p38450 Brassica napus
A03p43500 Brassica napus
A05p12290 Brassica napus
Aa31LG5G4100 Aethionema arabicum
Aa31LG8G1030 Aethionema arabicum
Aa31LG8G10890 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.227 Anthoceros agrestis
Actinidia30103 Actinidia chinensis
Actinidia32149 Actinidia chinensis
Actinidia39945 Actinidia chinensis
Ah.04g153380 Amaranthus hybridus
Ah.08g216260 Amaranthus hybridus
Ah.13g075170 Amaranthus hybridus
AL3G26020 Arabidopsis lyrata
AL3G39390 Arabidopsis lyrata
AL4G28830 Arabidopsis lyrata
Aqoxy2G03812 Aquilegia oxysepala
Aqoxy5G00048 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.79AEK5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IG0WB5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NEHI9Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QW3ZCC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T6NT17 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TIK1PY Arachis hypogaea
AT2G33210 Arabidopsis thaliana
AT3G13860 Arabidopsis thaliana
AT3G23990 Arabidopsis thaliana
ATR0053G035 Amborella trichopoda
ATR0693G255 Amborella trichopoda
Atru.chr1.3760 Acer truncatum
Atru.chr10.929 Acer truncatum
Atru.chr4.1818 Acer truncatum
Atru.ctg192_2.1 Acer truncatum
AUR62009829 Chenopodium quinoa
AUR62035324 Chenopodium quinoa
AUR62035925 Chenopodium quinoa
AUR62038141 Chenopodium quinoa
BcaB02g10536 Brassica carinata
BcaB03g14598 Brassica carinata
BcaB04g18802 Brassica carinata
BcaC01g03343 Brassica carinata
BcaC01g03972 Brassica carinata
BcaC01g05852 Brassica carinata
BcaC02g11408 Brassica carinata
BcaC06g35664 Brassica carinata
BolC3t14560H Brassica oleracea
BolC3t16925H Brassica oleracea
BolC3t17607H Brassica oleracea
BolC4t23158H Brassica oleracea
BolC7t41699H Brassica oleracea
BraA03t11123Z Brassica rapa
BraA03t12996Z Brassica rapa
BraA03t13489Z Brassica rapa
BraA05t20170Z Brassica rapa
C03p21770 Brassica napus
C03p46620 Brassica napus
C03p53460 Brassica napus
C04p15870 Brassica napus
CAN.G1389.25 Capsicum annuum
CAN.G1588.3 Capsicum annuum
CAN.G305.15 Capsicum annuum
CANSAT01G0952 Cannabis sativa
CANSAT56G1649 Cannabis sativa
CANSAT78G1698 Cannabis sativa
CARHR088650 Cardamine hirsuta
CARHR127210 Cardamine hirsuta
CARHR127220 Cardamine hirsuta
Carub.0003s1341 Capsella rubella
Carub.0003s2453 Capsella rubella
Carub.0004s1467 Capsella rubella
Ca_10366_v3 Cicer arietinum L.
Ca_11595_v3 Cicer arietinum L.
Ca_23322_v3 Cicer arietinum L.
CBR_g30835 Chara braunii
Cc01_g17440 Coffea canephora
Cc03_g07040 Coffea canephora
Cc04_g01900 Coffea canephora
CDE02G1653 Ceratophyllum demersum
CDE06G2619 Ceratophyllum demersum
Cfa003582 Carpinus fangiana
Ciclev10023620m.g Citrus clementina
Ciclev10025257m.g Citrus clementina
CiPaw.01G206100 Carya illinoinensis
CiPaw.01G224700 Carya illinoinensis
CiPaw.02G127800 Carya illinoinensis
CiPaw.03G153200 Carya illinoinensis
ClCG06G007380 Citrullus lanatus
ClCG09G000710 Citrullus lanatus
ClCG09G009400 Citrullus lanatus
COL.COLO4_30677 Corchorus olitorius
Cpa.g.sc25.39 Carica papaya
Cpa.g.sc59.67 Carica papaya
Cpa.g.sc8.201 Carica papaya
Cre06.g309100 Chlamydomonas reinhardtii
CsaV3_2G012300 Cucumis sativus L.
CsaV3_7G025500 Cucumis sativus L.
CsaV3_7G034770 Cucumis sativus L.
CSS0000706 Camellia sinensis var. sinensis
CSS0001666 Camellia sinensis var. sinensis
CSS0020129 Camellia sinensis var. sinensis
CSS0029920 Camellia sinensis var. sinensis
CSS0036305 Camellia sinensis var. sinensis
CSS0043610 Camellia sinensis var. sinensis
DCAR_002283 Daucus carota
DCAR_012624 Daucus carota
DCAR_016155 Daucus carota
DCAR_030777 Daucus carota
Dinv19239 Davidia involucrata
Dinv37911 Davidia involucrata
Dinv38295 Davidia involucrata
Dinv43033 Davidia involucrata
Duzib138G1483 Durio zibethinus
Duzib151G0241 Durio zibethinus
Duzib211G0272 Durio zibethinus
Duzib212G0389 Durio zibethinus
Duzib235G0356 Durio zibethinus
ECA247G0356 Erigeron canadensis
ECA247G1909 Erigeron canadensis
ECA248G1845 Erigeron canadensis
EL10Ac3g06768 Beta vulgaris
EL10Ac7g16343 Beta vulgaris
Eucgr.F03134 Eucalyptus grandis
Eucgr.H02866 Eucalyptus grandis
FAN02G3868 Fragaria x ananassa
FAN05G3863 Fragaria x ananassa
FAN07G0384 Fragaria x ananassa
FAN12G1740 Fragaria x ananassa
FAN14G4908 Fragaria x ananassa
FAN15G1056 Fragaria x ananassa
FAN17G0069 Fragaria x ananassa
FAN24G2934 Fragaria x ananassa
FAN27G0074 Fragaria x ananassa
FvH4_2g19800 Fragaria vesca
FvH4_4g05420 Fragaria vesca
FvH4_6g33450 Fragaria vesca
Glyma.07G009600 Glycine max
Glyma.08G192700 Glycine max
Glyma.10G127800 Glycine max
Glyma.10G193200 Glycine max
Glyma.20G079300 Glycine max
Glyma.20G197100 Glycine max
Gohir.A05G135300 Gossypium hirsutum
Gohir.A09G201800 Gossypium hirsutum
Gohir.A09G201900 Gossypium hirsutum
Gohir.A11G135200 Gossypium hirsutum
Gohir.D05G137300 Gossypium hirsutum
Gohir.D09G195700 Gossypium hirsutum
Gohir.D09G195800 Gossypium hirsutum
Gohir.D11G141400 Gossypium hirsutum
Gorai.006G219100 Gossypium raimondii
Gorai.006G219200 Gossypium raimondii
Gorai.007G151700 Gossypium raimondii
Gorai.009G141700 Gossypium raimondii
GSVIVG01016859001 Vitis vinifera
GSVIVG01029025001 Vitis vinifera
HanXRQChr02g0059441 Helianthus annuus
HanXRQChr04g0095201 Helianthus annuus
HanXRQChr04g0095231 Helianthus annuus
HanXRQChr10g0280521 Helianthus annuus
HanXRQChr15g0468471 Helianthus annuus
Haze_11536 Corylus avellana
Haze_15957 Corylus avellana
Haze_24751 Corylus avellana
Haze_24753 Corylus avellana
Haze_26240 Corylus avellana
Hma1.2p1_0388F.1_g142380 Hydrangea macrophylla
Hma1.2p1_1393F.1_g280210 Hydrangea macrophylla
Hma1.2p1_2329F.1_g320040 Hydrangea macrophylla
HPP92_005496 Vanilla planifolia
Hund19261 Selenicereus undatus
Hund20853 Selenicereus undatus
Hund24854 Selenicereus undatus
Hund24889 Selenicereus undatus
Lalb_Chr03g0036801 Lupinus albus
Lalb_Chr04g0263211 Lupinus albus
Lalb_Chr06g0169791 Lupinus albus
Lalb_Chr19g0128631 Lupinus albus
Lalb_Chr21g0312691 Lupinus albus
Lj3A599G46 Lonicera japonica
Lj3g0001253 Lotus japonicus
Lj5g0014607 Lotus japonicus
Lj5g0025126 Lotus japonicus
Lj6A642T82 Lonicera japonica
Lj6C642T7 Lonicera japonica
Lj9C519G5 Lonicera japonica
Lju414A1G21 Lonicera japonica
Lsat_1_v5_gn_1_35540 Lactuca sativa
Lsat_1_v5_gn_6_63121 Lactuca sativa
Lsat_1_v5_gn_8_9901 Lactuca sativa
Lsat_1_v5_gn_9_11221 Lactuca sativa
Manes.03G155000 Manihot esculenta
Manes.11G026100 Manihot esculenta
Manes.15G048600 Manihot esculenta
Mapoly0144s0025 Marchantia polymorpha
MBI04_g44680_MAGBIO Magnolia biondii
MBI10_g16805_MAGBIO Magnolia biondii
MCO13G395 Micromonas commoda
MD05G1182500 Malus domestica
MD09G1192900 Malus domestica
MD10G1170700 Malus domestica
Medtr1g090130 Medicago truncatula
Medtr1g090140 Medicago truncatula
Medtr8g017080 Medicago truncatula
MELO3C023058.2 Cucumis melo
MELO3C024388.2 Cucumis melo
Migut.D00503 Erythranthe guttata
Migut.G00606 Erythranthe guttata
Migut.I01029 Erythranthe guttata
MSTRG.22580 Avicennia marina
MSTRG.4199 Avicennia marina
MSTRG.9839 Avicennia marina
Nitab4.5_0000451g0170 Nicotiana tabacum
Nitab4.5_0001295g0180 Nicotiana tabacum
Nitab4.5_0001769g0100 Nicotiana tabacum
Nitab4.5_0003136g0020 Nicotiana tabacum
Nitab4.5_0006949g0030 Nicotiana tabacum
Nitab4.5_0012036g0020 Nicotiana tabacum
Nn3g19860 Nelumbo nucifera
Nn6g35493 Nelumbo nucifera
Oeu022323.1 Olea europaea
Oeu053306.1 Olea europaea
Os03g0143400 Oryza sativa ssp. japonica
Os05g0540300 Oryza sativa ssp. japonica
Os10g0462900 Oryza sativa ssp. japonica
Peaxi162Scf00038g01627 Petunia axillaris
Peaxi162Scf00047g01633 Petunia axillaris
Peaxi162Scf00536g00079 Petunia axillaris
PGR083G2514 Punica granatum
PGR102G1114 Punica granatum
PGR142G1761 Punica granatum
PGSC0003DMG400002585 Solanum tuberosum
PGSC0003DMG400011575 Solanum tuberosum
PGSC0003DMG401027165 Solanum tuberosum
Phvul.007G135100 Phaseolus vulgaris
Phvul.007G238500 Phaseolus vulgaris
Phvul.010G138700 Phaseolus vulgaris
Potri.001G054400 Populus trichocarpa
Potri.002G252900 Populus trichocarpa
Potri.003G039475 Populus trichocarpa
Potri.003G173900 Populus trichocarpa
Pp3c13_7040 Physcomitrium patens
Pp3c20_18540 Physcomitrium patens
Pp3c26_2180 Physcomitrium patens
Pp3c4_22500 Physcomitrium patens
PRCOL_00000441 Prasinoderma coloniale
Prupe.1G056300 Prunus persica
Prupe.3G049300 Prunus persica
Prupe.8G209200 Prunus persica
Psat4g188680 Pisum sativum
Psat6g170600 Pisum sativum
Psat6g170800 Pisum sativum
Psat7g001200 Pisum sativum
PSO170G6152 Papaver somniferum
PSO210G0015 Papaver somniferum
PSO210G2454 Papaver somniferum
PSO384G1400 Papaver somniferum
PSO764G0189 Papaver somniferum
QL05p012453 Quercus lobata
QL06p022681 Quercus lobata
RcHm_v2.0_Chr2g0143341 Rosa chinensis
RcHm_v2.0_Chr4g0396571 Rosa chinensis
RcHm_v2.0_Chr5g0043281 Rosa chinensis
RcHm_v2.0_Chr6g0285501 Rosa chinensis
RcHm_v2.0_Chr7g0234301 Rosa chinensis
Rhsim08G0233800 Rhododendron simsii
Sabra01G0038900 Salix brachista
Sabra02G0192100 Salix brachista
Sabra03G0127400 Salix brachista
SalBow2G0241 Salvia bowleyana
SalBow6G0429 Salvia bowleyana
Sc12g0010260 Simmondsia chinensis
Sc13g0002950 Simmondsia chinensis
Sc19g0005820 Simmondsia chinensis
Sed0004422 Sechium edule
Sed0009432 Sechium edule
Sed0012037 Sechium edule
Sed0013920 Sechium edule
SEGI_22876 Sequoiadendron giganteum
SGA_v2.0_scaffold127G34054 Striga asiatica
SGA_v2.0_scaffold138G35167 Striga asiatica
SGA_v2.0_scaffold57G20165 Striga asiatica
SGA_v2.0_scaffold57G20168 Striga asiatica
SMO347G0289 Selaginella moellendorffii
SMO358G0751 Selaginella moellendorffii
SMO367G0747 Selaginella moellendorffii
Solyc03g121640.3 Solanum lycopersicum
Solyc05g053470.3 Solanum lycopersicum
Solyc09g091180.3 Solanum lycopersicum
Sopen03g040450 Solanum pennellii
Sopen05g031970 Solanum pennellii
Sopen09g034150 Solanum pennellii
Sp3g12080 Schrenkiella parvula
Sp3g21970 Schrenkiella parvula
Sp4g15510 Schrenkiella parvula
TAR365G0603 Trochodendron aralioides
TAR636G0940 Trochodendron aralioides
TAR636G1961 Trochodendron aralioides
THA.LOC104801055 Tarenaya hassleriana
THA.LOC104804823 Tarenaya hassleriana
THA.LOC104810340 Tarenaya hassleriana
THA.LOC104821623 Tarenaya hassleriana
THA.LOC104826106 Tarenaya hassleriana
Thecc.01G232900 Theobroma cacao
Thecc.04G215300 Theobroma cacao
Thecc.06G113100 Theobroma cacao
Thhalv10016425m.g Eutrema salsugineum
Thhalv10016427m.g Eutrema salsugineum
Thhalv10020386m.g Eutrema salsugineum
TPR.G13389 Trifolium pratense
TPR.G13391 Trifolium pratense
TPR.G19299 Trifolium pratense
TWI09G1178 Tripterygium wilfordii
TWI31G0292 Tripterygium wilfordii
TWI53G0955 Tripterygium wilfordii
unitig_32.g11019 Utricularia gibba
unitig_748.g8288 Utricularia gibba
vmacro02731 Vaccinium macrocarpon
vmacro15496 Vaccinium macrocarpon
vmacro18782 Vaccinium macrocarpon
VMungo0331G1738 Vigna mungo
VMungo0720G1756 Vigna mungo
VMungo0720G3027 Vigna mungo
Zm00001eb046580 Zea mays
Zm00001eb222300 Zea mays
Zm00001eb294310 Zea mays

User provided reference genes

Program Settings