Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p31850 Brassica napus
A05p01400 Brassica napus
A09p00190 Brassica napus
A09p53740 Brassica napus
A10p00530 Brassica napus
Aa31LG10G15640 Aethionema arabicum
Aa31LG10G15650 Aethionema arabicum
Aa31LG1G10930 Aethionema arabicum
Aa31LG1G27730 Aethionema arabicum
Aa31LG5G860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3350 Anthoceros agrestis
Actinidia01394 Actinidia chinensis
Actinidia02804 Actinidia chinensis
Actinidia02840 Actinidia chinensis
Actinidia04209 Actinidia chinensis
Actinidia22722 Actinidia chinensis
Actinidia24707 Actinidia chinensis
Actinidia27013 Actinidia chinensis
Actinidia27217 Actinidia chinensis
Actinidia28495 Actinidia chinensis
Actinidia28496 Actinidia chinensis
AL1G11010 Arabidopsis lyrata
AL4G45680 Arabidopsis lyrata
AL5G44070 Arabidopsis lyrata
AL5G44130 Arabidopsis lyrata
AL6G52270 Arabidopsis lyrata
Aqoxy7G00147 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6FX6NP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M6V3QK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RJBH5A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WMYS0M Arachis hypogaea
AT1G01440 Arabidopsis thaliana
AT2G46380 Arabidopsis thaliana
AT3G61670 Arabidopsis thaliana
AT4G01090 Arabidopsis thaliana
ATR1100G028 Amborella trichopoda
ATR1127G123 Amborella trichopoda
Atru.chr2.761 Acer truncatum
Atru.chr5.629 Acer truncatum
Atru.chr9.2033 Acer truncatum
Atru.chr9.2039 Acer truncatum
AUR62004460 Chenopodium quinoa
AUR62010811 Chenopodium quinoa
AUR62019810 Chenopodium quinoa
AUR62023488 Chenopodium quinoa
BcaB01g02339 Brassica carinata
BcaB03g13582 Brassica carinata
BcaC01g06844 Brassica carinata
BcaC02g12689 Brassica carinata
BcaC02g12690 Brassica carinata
BcaC02g12807 Brassica carinata
BcaC02g12808 Brassica carinata
BcaC04g24125 Brassica carinata
BcaC08g45493 Brassica carinata
BolC1t04902H Brassica oleracea
BolC3t16160H Brassica oleracea
BolC4t21808H Brassica oleracea
BolC5t28845H Brassica oleracea
BolC6t38292H Brassica oleracea
BolC8t51235H Brassica oleracea
BolC9t53016H Brassica oleracea
BraA03t12359Z Brassica rapa
BraA05t19137Z Brassica rapa
BraA09t35747Z Brassica rapa
BraA09t40796Z Brassica rapa
BraA10t42332Z Brassica rapa
C03p38860 Brassica napus
C04p01570 Brassica napus
C05p00560 Brassica napus
C06p31620 Brassica napus
C07p39010 Brassica napus
C08p36520 Brassica napus
C09p00820 Brassica napus
CAN.G1094.14 Capsicum annuum
CAN.G1215.1 Capsicum annuum
CAN.G532.98 Capsicum annuum
CAN.G769.8 Capsicum annuum
CAN.G7779.1 Capsicum annuum
CAN.G869.26 Capsicum annuum
CAN.G986.36 Capsicum annuum
CANSAT21G1669 Cannabis sativa
CANSAT56G0136 Cannabis sativa
CARHR001000 Cardamine hirsuta
CARHR141660 Cardamine hirsuta
CARHR171980 Cardamine hirsuta
CARHR249200 Cardamine hirsuta
Carub.0001s0082 Capsella rubella
Carub.0004s2908 Capsella rubella
Carub.0005s2836 Capsella rubella
Carub.0006s3615 Capsella rubella
Ca_09498_v3 Cicer arietinum L.
Ca_26753_v3 Cicer arietinum L.
Cc02_g39070 Coffea canephora
Cc08_g15800 Coffea canephora
CDE02G3823 Ceratophyllum demersum
CDE04G0602 Ceratophyllum demersum
CDE06G2101 Ceratophyllum demersum
CDE07G0207 Ceratophyllum demersum
CDE09G0206 Ceratophyllum demersum
CDE10G0145 Ceratophyllum demersum
CDE10G0332 Ceratophyllum demersum
Cfa003827 Carpinus fangiana
Ciclev10018757m.g Citrus clementina
Ciclev10019327m.g Citrus clementina
CiPaw.02G039200 Carya illinoinensis
CiPaw.11G123700 Carya illinoinensis
CiPaw.12G084800 Carya illinoinensis
ClCG05G000970 Citrullus lanatus
ClCG07G014900 Citrullus lanatus
COL.COLO4_06319 Corchorus olitorius
COL.COLO4_21715 Corchorus olitorius
Cpa.g.c29045.1 Carica papaya
CsaV3_3G008240 Cucumis sativus L.
CsaV3_4G006430 Cucumis sativus L.
CSS0017749 Camellia sinensis var. sinensis
CSS0030482 Camellia sinensis var. sinensis
CSS0034118 Camellia sinensis var. sinensis
CSS0046700 Camellia sinensis var. sinensis
DCAR_006968 Daucus carota
DCAR_008653 Daucus carota
DCAR_025241 Daucus carota
DCAR_027718 Daucus carota
Dinv32561 Davidia involucrata
Dinv37547 Davidia involucrata
Dinv37548 Davidia involucrata
Dinv38855 Davidia involucrata
Dinv43899 Davidia involucrata
Duzib133G0749 Durio zibethinus
Duzib138G1945 Durio zibethinus
Duzib205G0021 Durio zibethinus
ECA234G2013 Erigeron canadensis
ECA246G3070 Erigeron canadensis
EL10Ac1g00305 Beta vulgaris
EL10Ac5g12890 Beta vulgaris
Eucgr.D01710 Eucalyptus grandis
Eucgr.E00071 Eucalyptus grandis
FAN01G0631 Fragaria x ananassa
FAN03G0742 Fragaria x ananassa
FAN04G0570 Fragaria x ananassa
FAN04G2354 Fragaria x ananassa
FAN06G0660 Fragaria x ananassa
FAN06G2868 Fragaria x ananassa
FAN08G1238 Fragaria x ananassa
FAN10G1849 Fragaria x ananassa
FAN10G4210 Fragaria x ananassa
FAN13G2437 Fragaria x ananassa
FAN18G3838 Fragaria x ananassa
FAN18G4174 Fragaria x ananassa
FvH4_5g04100 Fragaria vesca
FvH4_7g16060 Fragaria vesca
Glyma.03G256300 Glycine max
Glyma.07G057700 Glycine max
Glyma.16G026700 Glycine max
Glyma.19G254200 Glycine max
Gohir.A02G102102 Gossypium hirsutum
Gohir.A07G139200 Gossypium hirsutum
Gohir.A11G095600 Gossypium hirsutum
Gohir.A12G111050 Gossypium hirsutum
Gohir.A12G111100 Gossypium hirsutum
Gohir.D03G082000 Gossypium hirsutum
Gohir.D07G144300 Gossypium hirsutum
Gohir.D11G100500 Gossypium hirsutum
Gohir.D12G114400 Gossypium hirsutum
Gorai.001G156300 Gossypium raimondii
Gorai.003G081600 Gossypium raimondii
Gorai.007G106800 Gossypium raimondii
Gorai.008G123900 Gossypium raimondii
GSVIVG01019501001 Vitis vinifera
GSVIVG01027058001 Vitis vinifera
HanXRQChr03g0088291 Helianthus annuus
HanXRQChr16g0524011 Helianthus annuus
HanXRQChr16g0524031 Helianthus annuus
HanXRQChr17g0535131 Helianthus annuus
HanXRQChr17g0562091 Helianthus annuus
Haze_08656 Corylus avellana
Haze_15628 Corylus avellana
Hma1.2p1_0384F.1_g141140 Hydrangea macrophylla
Hma1.2p1_0952F.1_g240940 Hydrangea macrophylla
HPP92_000615 Vanilla planifolia
HPP92_003987 Vanilla planifolia
Hund11403 Selenicereus undatus
Hund14235 Selenicereus undatus
Hund16697 Selenicereus undatus
Hund27218 Selenicereus undatus
Lalb_Chr04g0261611 Lupinus albus
Lalb_Chr17g0342431 Lupinus albus
Lalb_Chr18g0044331 Lupinus albus
Lj1g0007495 Lotus japonicus
Lj2A171T60 Lonicera japonica
Lj3g0007856 Lotus japonicus
Lj7A503T50 Lonicera japonica
Lj9A591T85 Lonicera japonica
Lsat_1_v5_gn_3_10180 Lactuca sativa
Lsat_1_v5_gn_4_34201 Lactuca sativa
Lsat_1_v5_gn_7_2200 Lactuca sativa
Manes.01G248100 Manihot esculenta
Manes.02G012300 Manihot esculenta
Manes.05G025300 Manihot esculenta
Mapoly0001s0371 Marchantia polymorpha
MBI03_g40812_MAGBIO Magnolia biondii
MBI06_g32756_MAGBIO Magnolia biondii
MBI07_g24336_MAGBIO Magnolia biondii
MD01G1076900 Malus domestica
MD06G1102600 Malus domestica
MD06G1102800 Malus domestica
MD07G1146100 Malus domestica
MD07G1146300 Malus domestica
MD14G1121700 Malus domestica
Medtr0024s0020 Medicago truncatula
Medtr7g117150 Medicago truncatula
MELO3C006044.2 Cucumis melo
MELO3C016307.2 Cucumis melo
Migut.B01842 Erythranthe guttata
Migut.B01843 Erythranthe guttata
Migut.E01238 Erythranthe guttata
MSTRG.13878 Avicennia marina
MSTRG.17325 Avicennia marina
Nitab4.5_0000223g0240 Nicotiana tabacum
Nitab4.5_0008990g0030 Nicotiana tabacum
Nitab4.5_0010205g0010 Nicotiana tabacum
Nn1g01817 Nelumbo nucifera
Nn3g19072 Nelumbo nucifera
Oeu007859.2 Olea europaea
Oeu022861.2 Olea europaea
Oeu038582.1 Olea europaea
Oeu038584.1 Olea europaea
Oeu038692.1 Olea europaea
Oeu061089.2 Olea europaea
Os01g0621300 Oryza sativa ssp. japonica
Os02g0258300 Oryza sativa ssp. japonica
Os05g0586400 Oryza sativa ssp. japonica
Os06g0524300 Oryza sativa ssp. japonica
Peaxi162Scf00074g01133 Petunia axillaris
Peaxi162Scf00843g00002 Petunia axillaris
PGR031G1722 Punica granatum
PGR042G1671 Punica granatum
PGR042G1888 Punica granatum
PGSC0003DMG400012301 Solanum tuberosum
PGSC0003DMG401000097 Solanum tuberosum
Phvul.006G111100 Phaseolus vulgaris
Phvul.006G111111 Phaseolus vulgaris
Phvul.010G111600 Phaseolus vulgaris
Potri.001G093900 Populus trichocarpa
Potri.003G137700 Populus trichocarpa
Potri.014G095700 Populus trichocarpa
Pp3c16_10870 Physcomitrium patens
Pp3c25_9130 Physcomitrium patens
Pp3c7_4630 Physcomitrium patens
Prupe.2G184400 Prunus persica
Prupe.5G115600 Prunus persica
Psat3g003760 Pisum sativum
Psat4g160280 Pisum sativum
PSO017G5511 Papaver somniferum
PSO063G1517 Papaver somniferum
PSO135G1064 Papaver somniferum
PSO384G3902 Papaver somniferum
QL02p031368 Quercus lobata
QL04p056206 Quercus lobata
RcHm_v2.0_Chr1g0359001 Rosa chinensis
RcHm_v2.0_Chr4g0399021 Rosa chinensis
RcHm_v2.0_Chr5g0049731 Rosa chinensis
RcHm_v2.0_Chr7g0195401 Rosa chinensis
RcHm_v2.0_Chr7g0243711 Rosa chinensis
Rhsim01G0170600 Rhododendron simsii
Rhsim02G0241200 Rhododendron simsii
Rhsim07G0083700 Rhododendron simsii
Sabra01G0069800 Salix brachista
Sabra03G0099100 Salix brachista
Sabra14G0070200 Salix brachista
SalBow1G3290 Salvia bowleyana
SalBow3G2923 Salvia bowleyana
Sc01g0002940 Simmondsia chinensis
Sc01g0010140 Simmondsia chinensis
Sed0001371 Sechium edule
Sed0007013 Sechium edule
Sed0015189 Sechium edule
Sed0021460 Sechium edule
SEGI_27923 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31427 Striga asiatica
SGA_v2.0_scaffold144G35851 Striga asiatica
SGA_v2.0_scaffold5G02996 Striga asiatica
SMO278G0032 Selaginella moellendorffii
SMO352G0019 Selaginella moellendorffii
Solyc01g095590.3 Solanum lycopersicum
Solyc08g082040.4 Solanum lycopersicum
Sopen01g039340 Solanum pennellii
Sopen08g030330 Solanum pennellii
Sp4g28410 Schrenkiella parvula
Sp5g01740 Schrenkiella parvula
Sp6g01020 Schrenkiella parvula
TAR374G0195 Trochodendron aralioides
TAR374G1330 Trochodendron aralioides
TAR623G0216 Trochodendron aralioides
TAR629G3516 Trochodendron aralioides
TAR636G0571 Trochodendron aralioides
TAR636G2669 Trochodendron aralioides
THA.LOC104801377 Tarenaya hassleriana
THA.LOC104802062 Tarenaya hassleriana
THA.LOC104817047 Tarenaya hassleriana
Thecc.01G346100 Theobroma cacao
Thecc.03G293500 Theobroma cacao
Thhalv10001333m.g Eutrema salsugineum
Thhalv10005787m.g Eutrema salsugineum
Thhalv10007009m.g Eutrema salsugineum
Thhalv10028493m.g Eutrema salsugineum
TPR.G29598 Trifolium pratense
TPR.G4779 Trifolium pratense
TPR.G7663 Trifolium pratense
TWI23G0662 Tripterygium wilfordii
TWI34G1380 Tripterygium wilfordii
TWI60G0276 Tripterygium wilfordii
unitig_32.g10690 Utricularia gibba
unitig_88.g27732 Utricularia gibba
vmacro11443 Vaccinium macrocarpon
vmacro13910 Vaccinium macrocarpon
vmacro20864 Vaccinium macrocarpon
vmacro22514 Vaccinium macrocarpon
VMungo0331G0345 Vigna mungo
VMungo0540G0759 Vigna mungo
VMungo1383G2911 Vigna mungo
Zm00001eb159570 Zea mays
Zm00001eb204050 Zea mays
Zm00001eb238050 Zea mays
Zm00001eb344970 Zea mays
Zm00001eb358420 Zea mays
Zm00001eb382900 Zea mays

User provided reference genes

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