Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p46460 Brassica napus
Aa31LG10G1080 Aethionema arabicum
Aa31LG11G2550 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2249 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2374 Anthoceros agrestis
Actinidia06846 Actinidia chinensis
Actinidia35065 Actinidia chinensis
Ah.06g190560 Amaranthus hybridus
Ah.11g047290 Amaranthus hybridus
AL1G63360 Arabidopsis lyrata
AL6G34220 Arabidopsis lyrata
Aqoxy1G00434 Aquilegia oxysepala
Aqoxy3G03830 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1KQ3UY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5ZFR0R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GHI7N6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M2JIZN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NKU5VC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJI57B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VB8JJE Arachis hypogaea
AT1G55320 Arabidopsis thaliana
AT5G23050 Arabidopsis thaliana
ATR0001G035 Amborella trichopoda
ATR0691G223 Amborella trichopoda
ATR0770G001 Amborella trichopoda
ATR0921G009 Amborella trichopoda
ATR0947G001 Amborella trichopoda
Atru.chr3.2354 Acer truncatum
Atru.chr9.691 Acer truncatum
Atru.chr9.692 Acer truncatum
AUR62019181 Chenopodium quinoa
AUR62032165 Chenopodium quinoa
AUR62036923 Chenopodium quinoa
BcaC06g33191 Brassica carinata
BcaC09g49683 Brassica carinata
BcaNung02626 Brassica carinata
BcaNung05767 Brassica carinata
BolC1t03367H Brassica oleracea
BolC7t44970H Brassica oleracea
BraA03t13772Z Brassica rapa
BraA06t23243Z Brassica rapa
C01p33980 Brassica napus
C07p44510 Brassica napus
CAN.G1385.2 Capsicum annuum
CAN.G3.45 Capsicum annuum
CAN.G41.6 Capsicum annuum
CAN.G4315.1 Capsicum annuum
CAN.G575.3 Capsicum annuum
CAN.G781.24 Capsicum annuum
CAN.G982.6 Capsicum annuum
CANSAT78G0430 Cannabis sativa
CANSAT78G1467 Cannabis sativa
CANSAT80G0200 Cannabis sativa
CANSAT80G0687 Cannabis sativa
CARHR044970 Cardamine hirsuta
CARHR190480 Cardamine hirsuta
Carub.0001s4382 Capsella rubella
Carub.0006s2083 Capsella rubella
Ca_02632_v3 Cicer arietinum L.
Ca_17929_v3 Cicer arietinum L.
Ca_17951_v3 Cicer arietinum L.
Ca_30883_v3 Cicer arietinum L.
CBR_g28576 Chara braunii
Cc00_g16520 Coffea canephora
Cc00_g16530 Coffea canephora
Cc01_g02010 Coffea canephora
Cc01_g02040 Coffea canephora
Cc04_g07810 Coffea canephora
CDE05G2276 Ceratophyllum demersum
CDE05G3489 Ceratophyllum demersum
CDE10G0758 Ceratophyllum demersum
CDE10G0841 Ceratophyllum demersum
Cfa009584 Carpinus fangiana
Cfa009591 Carpinus fangiana
Cfa009592 Carpinus fangiana
Cfa009594 Carpinus fangiana
Cfa019848 Carpinus fangiana
Cfa019849 Carpinus fangiana
Cfa019850 Carpinus fangiana
Ciclev10014402m.g Citrus clementina
Ciclev10014404m.g Citrus clementina
Ciclev10019034m.g Citrus clementina
CiPaw.13G175200 Carya illinoinensis
CiPaw.14G134700 Carya illinoinensis
CiPaw.14G134800 Carya illinoinensis
CiPaw.15G122400 Carya illinoinensis
ClCG02G024010 Citrullus lanatus
ClCG06G015180 Citrullus lanatus
COL.COLO4_08306 Corchorus olitorius
COL.COLO4_35021 Corchorus olitorius
COL.COLO4_35026 Corchorus olitorius
Cpa.g.c36666 Carica papaya
Cpa.g.sc119.67 Carica papaya
Cpa.g.sc13.84 Carica papaya
Cre17.g726700 Chlamydomonas reinhardtii
CsaV3_1G003430 Cucumis sativus L.
CsaV3_4G023320 Cucumis sativus L.
CSS0005240 Camellia sinensis var. sinensis
CSS0016953 Camellia sinensis var. sinensis
CSS0026474 Camellia sinensis var. sinensis
DCAR_001986 Daucus carota
DCAR_015119 Daucus carota
DCAR_015122 Daucus carota
Dinv06458 Davidia involucrata
Dinv13447 Davidia involucrata
Dinv23880 Davidia involucrata
Dinv23881 Davidia involucrata
Dinv36861 Davidia involucrata
Dinv38609 Davidia involucrata
Duzib150G1253 Durio zibethinus
Duzib170G0060 Durio zibethinus
Duzib205G1917 Durio zibethinus
ECA233G3676 Erigeron canadensis
ECA247G0777 Erigeron canadensis
ECA247G1947 Erigeron canadensis
EL10Ac4g10364 Beta vulgaris
EL10Ac5g11221 Beta vulgaris
Eucgr.J01807 Eucalyptus grandis
Eucgr.J01810 Eucalyptus grandis
Eucgr.J01811 Eucalyptus grandis
Eucgr.J01813 Eucalyptus grandis
Eucgr.J01816 Eucalyptus grandis
Eucgr.K02641 Eucalyptus grandis
Eucgr.L00842 Eucalyptus grandis
Eucgr.L00845 Eucalyptus grandis
Eucgr.L00848 Eucalyptus grandis
Eucgr.L00850 Eucalyptus grandis
Eucgr.L01217 Eucalyptus grandis
Eucgr.L01220 Eucalyptus grandis
FAN11G2962 Fragaria x ananassa
FAN13G0269 Fragaria x ananassa
FAN16G1610 Fragaria x ananassa
FAN18G0456 Fragaria x ananassa
FAN18G3783 Fragaria x ananassa
FAN21G0552 Fragaria x ananassa
FAN25G0004 Fragaria x ananassa
FvH4_3g45320 Fragaria vesca
FvH4_5g12960 Fragaria vesca
Glyma.04G144600 Glycine max
Glyma.05G155800 Glycine max
Glyma.05G157600 Glycine max
Glyma.06G208401 Glycine max
Glyma.08G113600 Glycine max
Glyma.08G115350 Glycine max
Glyma.08G115401 Glycine max
Glyma.15G207200 Glycine max
Gohir.A03G073800 Gossypium hirsutum
Gohir.A08G079801 Gossypium hirsutum
Gohir.A08G079900 Gossypium hirsutum
Gohir.A13G212900 Gossypium hirsutum
Gohir.D03G100200 Gossypium hirsutum
Gohir.D08G089600 Gossypium hirsutum
Gohir.D13G216800 Gossypium hirsutum
Gorai.003G105300 Gossypium raimondii
Gorai.004G094300 Gossypium raimondii
Gorai.004G094400 Gossypium raimondii
Gorai.013G247300 Gossypium raimondii
GSVIVG01008200001 Vitis vinifera
GSVIVG01025429001 Vitis vinifera
GSVIVG01025430001 Vitis vinifera
HanXRQChr02g0043201 Helianthus annuus
HanXRQChr02g0056931 Helianthus annuus
Haze_18561 Corylus avellana
Haze_18562 Corylus avellana
Haze_22959 Corylus avellana
Haze_22960 Corylus avellana
Haze_22965 Corylus avellana
Haze_22966 Corylus avellana
Hma1.2p1_0340F.1_g130150 Hydrangea macrophylla
Hma1.2p1_0843F.1_g227270 Hydrangea macrophylla
HPP92_000824 Vanilla planifolia
HPP92_015491 Vanilla planifolia
Hund02534 Selenicereus undatus
Hund21637 Selenicereus undatus
Hund25142 Selenicereus undatus
Hund25145 Selenicereus undatus
Hund25146 Selenicereus undatus
Hund31395 Selenicereus undatus
Hund31492 Selenicereus undatus
Lalb_Chr07g0186621 Lupinus albus
Lalb_Chr11g0071871 Lupinus albus
Lalb_Chr13g0295011 Lupinus albus
Lalb_Chr13g0295111 Lupinus albus
Lj1A542T43 Lonicera japonica
Lj1A545T66 Lonicera japonica
Lj1C544G1 Lonicera japonica
Lj1C547G1 Lonicera japonica
Lj1g0024379 Lotus japonicus
Lj4g0001273 Lotus japonicus
Lj4g0009943 Lotus japonicus
Lj9A434T80 Lonicera japonica
Lsat_1_v5_gn_1_15601 Lactuca sativa
Lsat_1_v5_gn_6_51980 Lactuca sativa
Manes.01G022750 Manihot esculenta
Manes.03G087803 Manihot esculenta
Mapoly0053s0036 Marchantia polymorpha
MBI04_g09730_MAGBIO Magnolia biondii
MBI14_g38621_MAGBIO Magnolia biondii
MD03G1006300 Malus domestica
MD11G1009300 Malus domestica
MD11G1009400 Malus domestica
MD14G1218900 Malus domestica
Medtr2g056120 Medicago truncatula
Medtr8g085680 Medicago truncatula
Medtr8g086050 Medicago truncatula
MELO3C000769.2 Cucumis melo
MELO3C014682.2 Cucumis melo
MELO3C014683.2 Cucumis melo
MELO3C017271.2 Cucumis melo
MELO3C031046.2 Cucumis melo
Migut.D01489 Erythranthe guttata
Migut.N00569 Erythranthe guttata
MSTRG.18014 Avicennia marina
Nitab4.5_0000208g0110 Nicotiana tabacum
Nitab4.5_0000646g0220 Nicotiana tabacum
Nitab4.5_0000827g0060 Nicotiana tabacum
Nitab4.5_0004342g0090 Nicotiana tabacum
Nitab4.5_0006132g0050 Nicotiana tabacum
Nn2g15811 Nelumbo nucifera
Nn3g17642 Nelumbo nucifera
Oeu024284.1 Olea europaea
Oeu024286.2 Olea europaea
Oeu024287.2 Olea europaea
Oeu024288.1 Olea europaea
Oeu031927.2 Olea europaea
Os09g0380050 Oryza sativa ssp. japonica
Peaxi162Scf00017g03137 Petunia axillaris
Peaxi162Scf00119g00129 Petunia axillaris
Peaxi162Scf00738g00220 Petunia axillaris
PGR044G2308 Punica granatum
PGSC0003DMG400004274 Solanum tuberosum
PGSC0003DMG401024509 Solanum tuberosum
PGSC0003DMG402024509 Solanum tuberosum
Phvul.002G235900 Phaseolus vulgaris
Phvul.002G237900 Phaseolus vulgaris
Phvul.009G191300 Phaseolus vulgaris
Potri.001G006600 Populus trichocarpa
Potri.001G006700 Populus trichocarpa
Potri.015G056000 Populus trichocarpa
Pp3c16_8680 Physcomitrium patens
Pp3c1_12140 Physcomitrium patens
Pp3c5_15640 Physcomitrium patens
PRCOL_00006374 Prasinoderma coloniale
Prupe.5G213100 Prunus persica
Prupe.6G005900 Prunus persica
Psat1g027640 Pisum sativum
Psat7g071560 Pisum sativum
Psat7g073760 Pisum sativum
PSO063G2111 Papaver somniferum
PSO339G4083 Papaver somniferum
PSO384G0444 Papaver somniferum
QL01p008424 Quercus lobata
QL01p008442 Quercus lobata
QL01p054033 Quercus lobata
QL10p022078 Quercus lobata
RcHm_v2.0_Chr5g0083011 Rosa chinensis
RcHm_v2.0_Chr5g0083021 Rosa chinensis
RcHm_v2.0_Chr5g0083091 Rosa chinensis
RcHm_v2.0_Chr7g0184211 Rosa chinensis
Rhsim12G0145800 Rhododendron simsii
Rhsim13G0231100 Rhododendron simsii
Rhsim13G0231200 Rhododendron simsii
Sabra01G0004900 Salix brachista
Sabra01G0005200 Salix brachista
Sabra15G0081300 Salix brachista
SalBow1G5230 Salvia bowleyana
SalBow3G2324 Salvia bowleyana
SalBow6G5837 Salvia bowleyana
Sc09g0000160 Simmondsia chinensis
Sc10g0005090 Simmondsia chinensis
Sed0011933 Sechium edule
Sed0015932 Sechium edule
Sed0021594 Sechium edule
Sed0023383 Sechium edule
SEGI_07140 Sequoiadendron giganteum
SEGI_14567 Sequoiadendron giganteum
SEGI_16736 Sequoiadendron giganteum
SEGI_20338 Sequoiadendron giganteum
SEGI_28669 Sequoiadendron giganteum
SEGI_29188 Sequoiadendron giganteum
SGA_v2.0_scaffold42G16048 Striga asiatica
SGA_v2.0_scaffold6G03282 Striga asiatica
SHI18975 Sapria himalayana
SHI18976 Sapria himalayana
SHI18979 Sapria himalayana
SHI31272 Sapria himalayana
SHI31275 Sapria himalayana
SMO165G0085 Selaginella moellendorffii
SMO348G0020 Selaginella moellendorffii
SMO348G0037 Selaginella moellendorffii
Solyc03g114460.3 Solanum lycopersicum
Solyc12g038400.2 Solanum lycopersicum
Solyc12g100340.1 Solanum lycopersicum
Sopen03g033560 Solanum pennellii
Sopen12g018540 Solanum pennellii
Sopen12g035010 Solanum pennellii
Sp1g40980 Schrenkiella parvula
Sp2g24070 Schrenkiella parvula
TAR622G0735 Trochodendron aralioides
TAR636G3372 Trochodendron aralioides
THA.LOC104818369 Tarenaya hassleriana
THA.LOC104822677 Tarenaya hassleriana
Thecc.03G092000 Theobroma cacao
Thecc.03G114000 Theobroma cacao
Thecc.09G209100 Theobroma cacao
Thecc.09G209300 Theobroma cacao
Thhalv10003719m.g Eutrema salsugineum
Thhalv10011267m.g Eutrema salsugineum
TPR.G21309 Trifolium pratense
TPR.G24370 Trifolium pratense
TPR.G24398 Trifolium pratense
TWI15G0023 Tripterygium wilfordii
TWI60G0363 Tripterygium wilfordii
unitig_27.g24914 Utricularia gibba
unitig_61.g26332 Utricularia gibba
vmacro04224 Vaccinium macrocarpon
vmacro04225 Vaccinium macrocarpon
vmacro16463 Vaccinium macrocarpon
vmacro16464 Vaccinium macrocarpon
VMungo0251G0087 Vigna mungo
VMungo0251G1995 Vigna mungo
VMungo0251G3631 Vigna mungo
VMungo1309G0490 Vigna mungo
Zm00001eb026570 Zea mays
Zm00001eb061470 Zea mays
Zm00001eb311650 Zea mays
Zm00001eb391150 Zea mays

User provided reference genes

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