Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35180 Brassica napus
A05p30100 Brassica napus
A08p03540 Brassica napus
A08p26120 Brassica napus
Aa31LG10G4240 Aethionema arabicum
Aa31LG8G6280 Aethionema arabicum
Aa31sc49G70 Aethionema arabicum
Actinidia00398 Actinidia chinensis
Actinidia04376 Actinidia chinensis
Actinidia10178 Actinidia chinensis
Actinidia22674 Actinidia chinensis
Actinidia27980 Actinidia chinensis
Actinidia34384 Actinidia chinensis
Ah.05g167220 Amaranthus hybridus
Ah.11g042910 Amaranthus hybridus
AL1G41210 Arabidopsis lyrata
AL1G57380 Arabidopsis lyrata
AL3G32950 Arabidopsis lyrata
Aqoxy6G02798 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1CQ2W9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3E7GE6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7H5FB5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CHP91T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EPZ5Z8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H4NR85 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I63VJS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q9W41L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RRDD93 Arachis hypogaea
AT1G27690 Arabidopsis thaliana
AT1G49840 Arabidopsis thaliana
AT3G19540 Arabidopsis thaliana
ATR0661G347 Amborella trichopoda
Atru.chr13.798 Acer truncatum
Atru.chr5.2427 Acer truncatum
AUR62037449 Chenopodium quinoa
AUR62038781 Chenopodium quinoa
BcaB04g17292 Brassica carinata
BcaB04g20698 Brassica carinata
BcaB06g26013 Brassica carinata
BcaC01g01582 Brassica carinata
BcaC01g06934 Brassica carinata
BcaC05g28466 Brassica carinata
BcaC06g35310 Brassica carinata
BcaC09g48916 Brassica carinata
BcaC09g48917 Brassica carinata
BolC1t04426H Brassica oleracea
BolC3t19697H Brassica oleracea
BolC5t33275H Brassica oleracea
BolC7t42265H Brassica oleracea
BolC8t47173H Brassica oleracea
BraA01t03599Z Brassica rapa
BraA05t21850Z Brassica rapa
BraA08t32387Z Brassica rapa
BraA08t34562Z Brassica rapa
C01p44600 Brassica napus
C03p74490 Brassica napus
C05p45520 Brassica napus
C07p17580 Brassica napus
C08p03740 Brassica napus
CAN.G1054.15 Capsicum annuum
CAN.G606.26 Capsicum annuum
CANSAT25G2250 Cannabis sativa
CANSAT25G3166 Cannabis sativa
CARHR027180 Cardamine hirsuta
CARHR039890 Cardamine hirsuta
CARHR094960 Cardamine hirsuta
Carub.0001s2619 Capsella rubella
Carub.0001s3905 Capsella rubella
Carub.0003s1937 Capsella rubella
Ca_11051_v3 Cicer arietinum L.
Ca_15919_v3 Cicer arietinum L.
Cc02_g19530 Coffea canephora
Cc10_g05470 Coffea canephora
CDE02G0466 Ceratophyllum demersum
CDE04G1746 Ceratophyllum demersum
CDE07G1173 Ceratophyllum demersum
Cfa004617 Carpinus fangiana
Cfa017881 Carpinus fangiana
Ciclev10001042m.g Citrus clementina
Ciclev10028343m.g Citrus clementina
CiPaw.05G014200 Carya illinoinensis
CiPaw.06G167800 Carya illinoinensis
CiPaw.15G046700 Carya illinoinensis
CiPaw.16G033500 Carya illinoinensis
ClCG05G020400 Citrullus lanatus
ClCG08G016320 Citrullus lanatus
ClCG10G010590 Citrullus lanatus
COL.COLO4_05741 Corchorus olitorius
COL.COLO4_28549 Corchorus olitorius
COL.COLO4_32558 Corchorus olitorius
Cpa.g.c46749 Carica papaya
Cpa.g.sc1633.2 Carica papaya
Cpa.g.sc200.1 Carica papaya
CsaV3_2G026290 Cucumis sativus L.
CsaV3_4G000510 Cucumis sativus L.
CsaV3_4G034880 Cucumis sativus L.
CSS0012582 Camellia sinensis var. sinensis
CSS0023654 Camellia sinensis var. sinensis
CSS0028827 Camellia sinensis var. sinensis
CSS0045425 Camellia sinensis var. sinensis
DCAR_001665 Daucus carota
DCAR_008846 Daucus carota
DCAR_012807 Daucus carota
DCAR_020081 Daucus carota
DCAR_021974 Daucus carota
DCAR_029103 Daucus carota
Dinv15780 Davidia involucrata
Dinv39236 Davidia involucrata
Dinv42211 Davidia involucrata
Dinv44988 Davidia involucrata
Duzib041G0252 Durio zibethinus
Duzib052G0513 Durio zibethinus
Duzib093G1366 Durio zibethinus
Duzib132G1174 Durio zibethinus
Duzib248G1521 Durio zibethinus
ECA234G2092 Erigeron canadensis
ECA236G4977 Erigeron canadensis
ECA247G1182 Erigeron canadensis
EL10As7g23818 Beta vulgaris
Eucgr.F00130 Eucalyptus grandis
Eucgr.F02268 Eucalyptus grandis
Eucgr.G01292 Eucalyptus grandis
Eucgr.I01085 Eucalyptus grandis
FAN15G0767 Fragaria x ananassa
FAN15G1431 Fragaria x ananassa
FAN20G1612 Fragaria x ananassa
FAN20G1977 Fragaria x ananassa
FAN24G0127 Fragaria x ananassa
FAN24G1525 Fragaria x ananassa
FAN27G0333 Fragaria x ananassa
FAN27G1245 Fragaria x ananassa
FvH4_2g04650 Fragaria vesca
FvH4_2g33400 Fragaria vesca
Glyma.10G259500 Glycine max
Glyma.14G087300 Glycine max
Glyma.17G237000 Glycine max
Glyma.20G131300 Glycine max
Gohir.A01G121100 Gossypium hirsutum
Gohir.A03G184700 Gossypium hirsutum
Gohir.A04G119000 Gossypium hirsutum
Gohir.A06G022600 Gossypium hirsutum
Gohir.A12G020700 Gossypium hirsutum
Gohir.A13G044800 Gossypium hirsutum
Gohir.D01G108600 Gossypium hirsutum
Gohir.D02G206200 Gossypium hirsutum
Gohir.D04G160700 Gossypium hirsutum
Gohir.D06G019800 Gossypium hirsutum
Gohir.D12G021000 Gossypium hirsutum
Gohir.D13G044000 Gossypium hirsutum
Gorai.002G132800 Gossypium raimondii
Gorai.005G233600 Gossypium raimondii
Gorai.008G021300 Gossypium raimondii
Gorai.010G024300 Gossypium raimondii
Gorai.012G148500 Gossypium raimondii
Gorai.013G048800 Gossypium raimondii
GSVIVG01009382001 Vitis vinifera
GSVIVG01037884001 Vitis vinifera
HanXRQChr02g0039581 Helianthus annuus
HanXRQChr03g0075411 Helianthus annuus
HanXRQChr10g0288741 Helianthus annuus
HanXRQChr13g0407791 Helianthus annuus
HanXRQChr16g0509131 Helianthus annuus
HanXRQChr17g0557131 Helianthus annuus
Haze_10215 Corylus avellana
Haze_18285 Corylus avellana
Hma1.2p1_0923F.1_g237080 Hydrangea macrophylla
Hma1.2p1_1023F.1_g248960 Hydrangea macrophylla
Hma1.2p1_1518F.1_g288550 Hydrangea macrophylla
HPP92_007851 Vanilla planifolia
HPP92_010140 Vanilla planifolia
HPP92_014235 Vanilla planifolia
HPP92_018491 Vanilla planifolia
HPP92_026496 Vanilla planifolia
HPP92_026563 Vanilla planifolia
Hund05319 Selenicereus undatus
Lalb_Chr02g0145161 Lupinus albus
Lalb_Chr06g0165311 Lupinus albus
Lalb_Chr11g0062801 Lupinus albus
Lalb_Chr14g0368351 Lupinus albus
Lalb_Chr21g0308201 Lupinus albus
Lalb_Chr22g0354771 Lupinus albus
Lj4A67T60 Lonicera japonica
Lj4C761T11 Lonicera japonica
Lj5C216T7 Lonicera japonica
Lj5g0008085 Lotus japonicus
Lj5g0017793 Lotus japonicus
Lj9A326T73 Lonicera japonica
Lj9C326T4 Lonicera japonica
Lsat_1_v5_gn_1_23241 Lactuca sativa
Lsat_1_v5_gn_5_113681 Lactuca sativa
Lsat_1_v5_gn_7_85980 Lactuca sativa
Manes.05G180000 Manihot esculenta
Manes.07G066800 Manihot esculenta
Manes.10G073200 Manihot esculenta
Manes.18G043800 Manihot esculenta
Mapoly0067s0087 Marchantia polymorpha
MBI16_g24391_MAGBIO Magnolia biondii
MD05G1094100 Malus domestica
MD08G1088800 Malus domestica
MD10G1100800 Malus domestica
MD15G1073800 Malus domestica
Medtr1g018620 Medicago truncatula
Medtr1g106875 Medicago truncatula
Medtr3g102670 Medicago truncatula
MELO3C010821.2 Cucumis melo
MELO3C016802.2 Cucumis melo
MELO3C017985.2 Cucumis melo
Migut.B00412 Erythranthe guttata
Migut.C00505 Erythranthe guttata
Migut.N01154 Erythranthe guttata
Migut.N02763 Erythranthe guttata
MSTRG.1044 Avicennia marina
MSTRG.16698 Avicennia marina
MSTRG.20200 Avicennia marina
MSTRG.22231 Avicennia marina
MSTRG.24363 Avicennia marina
MSTRG.25048 Avicennia marina
MSTRG.27751 Avicennia marina
Nitab4.5_0000934g0140 Nicotiana tabacum
Nitab4.5_0001480g0040 Nicotiana tabacum
Nitab4.5_0004707g0030 Nicotiana tabacum
Nitab4.5_0011489g0010 Nicotiana tabacum
Nn1g04645 Nelumbo nucifera
Nn5g30481 Nelumbo nucifera
Oeu006887.1 Olea europaea
Oeu006888.1 Olea europaea
Oeu010104.1 Olea europaea
Oeu037261.1 Olea europaea
Oeu044268.1 Olea europaea
Oeu050859.1 Olea europaea
Oeu052752.1 Olea europaea
Os03g0606100 Oryza sativa ssp. japonica
Os07g0591100 Oryza sativa ssp. japonica
Os12g0581300 Oryza sativa ssp. japonica
Peaxi162Scf00016g02620 Petunia axillaris
Peaxi162Scf00081g00917 Petunia axillaris
Peaxi162Scf00152g00329 Petunia axillaris
PGR031G3042 Punica granatum
PGR042G3939 Punica granatum
PGR142G3542 Punica granatum
PGSC0003DMG400021537 Solanum tuberosum
PGSC0003DMG400025854 Solanum tuberosum
Phvul.001G025900 Phaseolus vulgaris
Phvul.007G042600 Phaseolus vulgaris
Potri.001G297500 Populus trichocarpa
Potri.009G092400 Populus trichocarpa
Potri.014G019900 Populus trichocarpa
Prupe.1G426600 Prunus persica
Prupe.8G138900 Prunus persica
Psat0s2786g0040 Pisum sativum
Psat5g039440 Pisum sativum
Psat5g039560 Pisum sativum
Psat6g215880 Pisum sativum
PSO541G5328 Papaver somniferum
PSO675G1383 Papaver somniferum
QL02p002654 Quercus lobata
QL11p032289 Quercus lobata
RcHm_v2.0_Chr6g0254271 Rosa chinensis
RcHm_v2.0_Chr6g0309141 Rosa chinensis
Rhsim05G0089500 Rhododendron simsii
Rhsim10G0161600 Rhododendron simsii
Rhsim11G0155400 Rhododendron simsii
RhsimUnG0126600 Rhododendron simsii
Sabra09G0071100 Salix brachista
Sabra14G0013000 Salix brachista
Sabra16G0186500 Salix brachista
SalBow3G4177 Salvia bowleyana
SalBow6G4051 Salvia bowleyana
SalBow6G6259 Salvia bowleyana
SalBow7G1195 Salvia bowleyana
SalBow8G4583 Salvia bowleyana
Sc02g0007730 Simmondsia chinensis
Sc14g0002630 Simmondsia chinensis
Sed0013680 Sechium edule
Sed0015417 Sechium edule
Sed0015790 Sechium edule
Sed0026011 Sechium edule
SEGI_05270 Sequoiadendron giganteum
SEGI_15317 Sequoiadendron giganteum
SEGI_22121 Sequoiadendron giganteum
SEGI_22272 Sequoiadendron giganteum
SEGI_22811 Sequoiadendron giganteum
SEGI_26078 Sequoiadendron giganteum
SGA_v2.0_scaffold14G06946 Striga asiatica
SGA_v2.0_scaffold219G42515 Striga asiatica
SGA_v2.0_scaffold225G43003 Striga asiatica
SGA_v2.0_scaffold32G13021 Striga asiatica
SHI05224 Sapria himalayana
SHI08374 Sapria himalayana
SMO270G0028 Selaginella moellendorffii
Solyc01g107350.3 Solanum lycopersicum
Solyc04g078190.4 Solanum lycopersicum
Sopen01g049590 Solanum pennellii
Sopen04g031810 Solanum pennellii
Sp1g23910 Schrenkiella parvula
Sp1g36730 Schrenkiella parvula
Sp3g17590 Schrenkiella parvula
TAR376G1234 Trochodendron aralioides
TAR381G0258 Trochodendron aralioides
TAR381G0469 Trochodendron aralioides
TAR381G1179 Trochodendron aralioides
TAR625G0204 Trochodendron aralioides
TAR628G1360 Trochodendron aralioides
THA.LOC104798788 Tarenaya hassleriana
THA.LOC104808399 Tarenaya hassleriana
THA.LOC104814185 Tarenaya hassleriana
THA.LOC104825813 Tarenaya hassleriana
Thecc.02G112500 Theobroma cacao
Thecc.08G093100 Theobroma cacao
Thhalv10007666m.g Eutrema salsugineum
Thhalv10011429m.g Eutrema salsugineum
Thhalv10020616m.g Eutrema salsugineum
TPR.G1428 Trifolium pratense
TPR.G27096 Trifolium pratense
TPR.G33699 Trifolium pratense
TPR.G3747 Trifolium pratense
TPR.G39956 Trifolium pratense
TWI12G1229 Tripterygium wilfordii
TWI31G0586 Tripterygium wilfordii
TWI56G0779 Tripterygium wilfordii
TWI79G0698 Tripterygium wilfordii
unitig_0.g882 Utricularia gibba
unitig_21.g20635 Utricularia gibba
unitig_21.g20725 Utricularia gibba
unitig_61.g26032 Utricularia gibba
unitig_744.g24130 Utricularia gibba
vmacro01984 Vaccinium macrocarpon
vmacro19461 Vaccinium macrocarpon
vmacro21460 Vaccinium macrocarpon
VMungo0647G2556 Vigna mungo
VMungo0720G1718 Vigna mungo
Zm00001eb029990 Zea mays
Zm00001eb108290 Zea mays
Zm00001eb150080 Zea mays
Zm00001eb219240 Zea mays
Zm00001eb326340 Zea mays
Zm00001eb363790 Zea mays

User provided reference genes

Program Settings