Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41000 Brassica napus
A03p08760 Brassica napus
A05p43250 Brassica napus
A10p21230 Brassica napus
Aa31LG5G14640 Aethionema arabicum
Actinidia22098 Actinidia chinensis
Actinidia38625 Actinidia chinensis
Ah.11g044250 Amaranthus hybridus
AL3G13990 Arabidopsis lyrata
Aqoxy5G01470 Aquilegia oxysepala
Aqoxy6G02332 Aquilegia oxysepala
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.15VHK9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.20DV7G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4LV1NS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.83QM18 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A6ZG0G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CM0YNG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G0HK4C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KQ8XLR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P0VRW3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.USLU8T Arachis hypogaea
AT3G04080 Arabidopsis thaliana
AT5G18280 Arabidopsis thaliana
ATR0681G010 Amborella trichopoda
Atru.chr2.1258 Acer truncatum
AUR62020703 Chenopodium quinoa
AUR62028021 Chenopodium quinoa
BcaB01g04905 Brassica carinata
BcaB01g05185 Brassica carinata
BcaB08g36689 Brassica carinata
BcaC04g18711 Brassica carinata
BcaC05g29194 Brassica carinata
BcaC05g30220 Brassica carinata
BcaC05g30541 Brassica carinata
BcaNung04942 Brassica carinata
BNapus_Darmor_BZH_scaffold_78p00710 Brassica napus
BolC1t05765H Brassica oleracea
BolC3t13506H Brassica oleracea
BolC5t34137H Brassica oleracea
BolC6t40172H Brassica oleracea
BolC9t58709H Brassica oleracea
BraA01t04534Z Brassica rapa
BraA03t10198Z Brassica rapa
BraA05t23068Z Brassica rapa
BraA10t44186Z Brassica rapa
C03p10200 Brassica napus
C05p62990 Brassica napus
C09p58670 Brassica napus
CAN.G566.48 Capsicum annuum
CAN.G68.18 Capsicum annuum
CAN.G767.19 Capsicum annuum
CAN.G809.34 Capsicum annuum
CANSAT78G1816 Cannabis sativa
CANSAT78G2327 Cannabis sativa
CARHR078210 Cardamine hirsuta
CARHR194770 Cardamine hirsuta
Carub.0003s0332 Capsella rubella
Carub.0006s1657 Capsella rubella
Ca_06697_v3 Cicer arietinum L.
Ca_08247_v3 Cicer arietinum L.
Ca_08248_v3 Cicer arietinum L.
CBR_g52218 Chara braunii
Cc00_g18810 Coffea canephora
Cc00_g35220 Coffea canephora
Cc02_g30310 Coffea canephora
Cc03_g16310 Coffea canephora
Cc09_g04800 Coffea canephora
Cc09_g04810 Coffea canephora
Cc09_g04820 Coffea canephora
CDE04G1071 Ceratophyllum demersum
CDE08G0386 Ceratophyllum demersum
CDE08G1054 Ceratophyllum demersum
CDE09G0632 Ceratophyllum demersum
CDE09G0868 Ceratophyllum demersum
Cfa021586 Carpinus fangiana
Cfa025779 Carpinus fangiana
Ciclev10019963m.g Citrus clementina
CiPaw.10G000100 Carya illinoinensis
ClCG03G011020 Citrullus lanatus
ClCG04G005210 Citrullus lanatus
COL.COLO4_20561 Corchorus olitorius
Cpa.g.sc676.2 Carica papaya
Cre06.g273500 Chlamydomonas reinhardtii
CsaV3_4G013370 Cucumis sativus L.
CSS0039347 Camellia sinensis var. sinensis
DCAR_013699 Daucus carota
DCAR_019900 Daucus carota
Dinv14601 Davidia involucrata
Duzib106G1698 Durio zibethinus
Duzib128G0242 Durio zibethinus
Duzib177G0053 Durio zibethinus
ECA233G2570 Erigeron canadensis
ECA233G6200 Erigeron canadensis
ECA248G2202 Erigeron canadensis
EL10Ac2g03645 Beta vulgaris
Eucgr.A02068 Eucalyptus grandis
FAN06G0572 Fragaria x ananassa
FAN06G2067 Fragaria x ananassa
FAN08G1979 Fragaria x ananassa
FAN11G1574 Fragaria x ananassa
FAN11G3692 Fragaria x ananassa
FAN12G1572 Fragaria x ananassa
FAN12G2327 Fragaria x ananassa
FAN14G5322 Fragaria x ananassa
FAN16G3345 Fragaria x ananassa
FAN18G2600 Fragaria x ananassa
FAN20G0391 Fragaria x ananassa
FAN20G2611 Fragaria x ananassa
FAN21G2215 Fragaria x ananassa
FAN24G0036 Fragaria x ananassa
FAN24G1143 Fragaria x ananassa
FAN24G1246 Fragaria x ananassa
FAN24G1482 Fragaria x ananassa
FAN25G2108 Fragaria x ananassa
FvH4_1g06120 Fragaria vesca
FvH4_2g05580 Fragaria vesca
FvH4_2g09140 Fragaria vesca
FvH4_3g22560 Fragaria vesca
FvH4_3g25500 Fragaria vesca
FvH4_3g27620 Fragaria vesca
FvH4_3g43400 Fragaria vesca
FvH4_4g04510 Fragaria vesca
FvH4_4g13450 Fragaria vesca
FvH4_5g09060 Fragaria vesca
FvH4_6g11760 Fragaria vesca
FvH4_7g24690 Fragaria vesca
FvH4_7g31870 Fragaria vesca
FvH4_7g32182 Fragaria vesca
Glyma.02G069900 Glycine max
Glyma.16G043300 Glycine max
Glyma.16G043400 Glycine max
Glyma.16G043500 Glycine max
Glyma.16G043700 Glycine max
Glyma.16G151400 Glycine max
Glyma.19G108500 Glycine max
Gohir.A06G125200 Gossypium hirsutum
Gohir.A07G055500 Gossypium hirsutum
Gohir.A08G175850 Gossypium hirsutum
Gohir.A11G205501 Gossypium hirsutum
Gohir.A11G240800 Gossypium hirsutum
Gohir.A12G190500 Gossypium hirsutum
Gohir.A13G105750 Gossypium hirsutum
Gohir.A13G105800 Gossypium hirsutum
Gohir.A13G166800 Gossypium hirsutum
Gohir.D11G250200 Gossypium hirsutum
Gohir.D13G170300 Gossypium hirsutum
Gorai.007G268200 Gossypium raimondii
Gorai.013G191600 Gossypium raimondii
GSVIVG01038278001 Vitis vinifera
HanXRQChr01g0024441 Helianthus annuus
HanXRQChr02g0054261 Helianthus annuus
HanXRQChr02g0054281 Helianthus annuus
HanXRQChr02g0054321 Helianthus annuus
HanXRQChr13g0397621 Helianthus annuus
Haze_19392 Corylus avellana
Hma1.2p1_0640F.1_g194150 Hydrangea macrophylla
HPP92_021144 Vanilla planifolia
HPP92_021210 Vanilla planifolia
Hund03238 Selenicereus undatus
Hund19366 Selenicereus undatus
Lalb_Chr14g0364321 Lupinus albus
Lalb_Chr14g0364341 Lupinus albus
Lalb_Chr16g0380921 Lupinus albus
Lalb_Chr16g0380931 Lupinus albus
Lalb_Chr21g0317101 Lupinus albus
Lalb_Chr22g0359471 Lupinus albus
Lj1A1139G48 Lonicera japonica
Lj1g0006233 Lotus japonicus
Lj1g0024802 Lotus japonicus
Lsat_1_v5_gn_6_38361 Lactuca sativa
Manes.08G147500 Manihot esculenta
Manes.09G144300 Manihot esculenta
Mapoly0002s0232 Marchantia polymorpha
MBI02_g09976_MAGBIO Magnolia biondii
MBI19_g24052_MAGBIO Magnolia biondii
MCO02G302 Micromonas commoda
MCO14G542 Micromonas commoda
MD12G1000500 Malus domestica
MD14G1000200 Malus domestica
Medtr4g036220 Medicago truncatula
Medtr6g033000 Medicago truncatula
Medtr7g085090 Medicago truncatula
Medtr7g085120 Medicago truncatula
Medtr7g085150 Medicago truncatula
Medtr7g085160 Medicago truncatula
Medtr7g085180 Medicago truncatula
Medtr7g085200 Medicago truncatula
MELO3C008792.2 Cucumis melo
Migut.B00993 Erythranthe guttata
Migut.G01309 Erythranthe guttata
MSTRG.11377 Avicennia marina
MSTRG.12818 Avicennia marina
MSTRG.18038 Avicennia marina
MSTRG.8411 Avicennia marina
Nitab4.5_0000005g0420 Nicotiana tabacum
Nitab4.5_0000243g0030 Nicotiana tabacum
Nitab4.5_0000348g0120 Nicotiana tabacum
Nitab4.5_0000389g0070 Nicotiana tabacum
Nitab4.5_0000668g0070 Nicotiana tabacum
Nitab4.5_0001070g0050 Nicotiana tabacum
Nitab4.5_0001110g0120 Nicotiana tabacum
Nitab4.5_0001574g0070 Nicotiana tabacum
Nitab4.5_0001574g0080 Nicotiana tabacum
Nitab4.5_0001574g0130 Nicotiana tabacum
Nitab4.5_0002787g0010 Nicotiana tabacum
Nitab4.5_0003263g0040 Nicotiana tabacum
Nitab4.5_0006997g0020 Nicotiana tabacum
Nitab4.5_0009117g0010 Nicotiana tabacum
Nn2g12471 Nelumbo nucifera
Nn7g35777 Nelumbo nucifera
Nn8g40429 Nelumbo nucifera
Oeu000405.1 Olea europaea
Oeu000722.1 Olea europaea
Oeu011093.3 Olea europaea
Oeu014727.2 Olea europaea
Oeu036764.1 Olea europaea
Os03g0328400 Oryza sativa ssp. japonica
Os07g0682800 Oryza sativa ssp. japonica
Os11g0125900 Oryza sativa ssp. japonica
Os11g0126400 Oryza sativa ssp. japonica
Os11g0126800 Oryza sativa ssp. japonica
Os11g0439600 Oryza sativa ssp. japonica
Os11g0440200 Oryza sativa ssp. japonica
Os12g0123500 Oryza sativa ssp. japonica
Os12g0123600 Oryza sativa ssp. japonica
Peaxi162Scf00036g01811 Petunia axillaris
Peaxi162Scf00378g00010 Petunia axillaris
Peaxi162Scf00378g00011 Petunia axillaris
Peaxi162Scf00378g00116 Petunia axillaris
Peaxi162Scf00378g00122 Petunia axillaris
Peaxi162Scf00459g00123 Petunia axillaris
Peaxi162Scf01205g00190 Petunia axillaris
PGR042G2533 Punica granatum
PGSC0003DMG400007335 Solanum tuberosum
PGSC0003DMG400007656 Solanum tuberosum
PGSC0003DMG400020578 Solanum tuberosum
PGSC0003DMG400029363 Solanum tuberosum
PGSC0003DMG400039667 Solanum tuberosum
PGSC0003DMG400043318 Solanum tuberosum
Phvul.001G096900 Phaseolus vulgaris
Phvul.001G099900 Phaseolus vulgaris
Phvul.001G100100 Phaseolus vulgaris
Phvul.004G077550 Phaseolus vulgaris
Potri.013G053500 Populus trichocarpa
Potri.013G053700 Populus trichocarpa
Potri.019G031000 Populus trichocarpa
Potri.019G031200 Populus trichocarpa
Pp3c20_9730 Physcomitrium patens
Pp3c23_6810 Physcomitrium patens
Pp3c5_4390 Physcomitrium patens
PRCOL_00000474 Prasinoderma coloniale
Prupe.7G001000 Prunus persica
Psat1g096880 Pisum sativum
Psat3g090840 Pisum sativum
Psat3g090960 Pisum sativum
PSO170G4601 Papaver somniferum
PSO541G4859 Papaver somniferum
PSO675G3498 Papaver somniferum
PSO700G0254 Papaver somniferum
QL07p020804 Quercus lobata
RcHm_v2.0_Chr3g0448171 Rosa chinensis
Rhsim01G0001700 Rhododendron simsii
Rhsim04G0085300 Rhododendron simsii
Sabra13G0048500 Salix brachista
Sabra19G0037600 Salix brachista
Sabra19G0040100 Salix brachista
SalBow2G1936 Salvia bowleyana
SalBow8G1732 Salvia bowleyana
SalBow8G3535 Salvia bowleyana
Sc06g0001420 Simmondsia chinensis
Sed0003409 Sechium edule
Sed0005957 Sechium edule
Sed0012083 Sechium edule
Sed0015088 Sechium edule
SGA_v2.0_scaffold12G06255 Striga asiatica
SGA_v2.0_scaffold51G18864 Striga asiatica
SHI27271 Sapria himalayana
SHI35177 Sapria himalayana
SHI35260 Sapria himalayana
SHI35267 Sapria himalayana
SHI35683 Sapria himalayana
SHI36217 Sapria himalayana
SHI37227 Sapria himalayana
SHI41322 Sapria himalayana
SHI41908 Sapria himalayana
SHI43632 Sapria himalayana
SHI48387 Sapria himalayana
SHI49142 Sapria himalayana
SHI49657 Sapria himalayana
SHI50131 Sapria himalayana
SHI50446 Sapria himalayana
SHI50950 Sapria himalayana
SHI50977 Sapria himalayana
SHI51737 Sapria himalayana
SMO203G0197 Selaginella moellendorffii
Solyc02g032520.1 Solanum lycopersicum
Solyc02g032550.3 Solanum lycopersicum
Solyc02g032560.3 Solanum lycopersicum
Solyc02g032570.1 Solanum lycopersicum
Solyc02g032580.3 Solanum lycopersicum
Solyc02g081980.3 Solanum lycopersicum
Solyc08g016010.3 Solanum lycopersicum
Solyc09g092400.2 Solanum lycopersicum
Solyc12g096560.2 Solanum lycopersicum
Solyc12g098540.2 Solanum lycopersicum
Solyc12g098545.1 Solanum lycopersicum
Sopen00g009330 Solanum pennellii
Sopen02g010820 Solanum pennellii
Sopen02g026610 Solanum pennellii
Sopen08g006270 Solanum pennellii
Sopen09g035300 Solanum pennellii
Sopen12g032390 Solanum pennellii
Sp3g03050 Schrenkiella parvula
Sp6g26020 Schrenkiella parvula
TAR623G1699 Trochodendron aralioides
TAR629G1822 Trochodendron aralioides
THA.LOC104802855 Tarenaya hassleriana
THA.LOC104827259 Tarenaya hassleriana
Thecc.05G259500 Theobroma cacao
Thhalv10013440m.g Eutrema salsugineum
Thhalv10020649m.g Eutrema salsugineum
TPR.G5868 Trifolium pratense
TPR.G5880 Trifolium pratense
TPR.G5882 Trifolium pratense
TPR.G6082 Trifolium pratense
TWI32G1126 Tripterygium wilfordii
TWI34G0339 Tripterygium wilfordii
unitig_749.g13499 Utricularia gibba
VMungo0464G0040 Vigna mungo
VMungo1383G0069 Vigna mungo
VMungo1383G1207 Vigna mungo
Zm00001eb015690 Zea mays
Zm00001eb111660 Zea mays
Zm00001eb112690 Zea mays
Zm00001eb129980 Zea mays
Zm00001eb155380 Zea mays
Zm00001eb156630 Zea mays
Zm00001eb168170 Zea mays
Zm00001eb181900 Zea mays
Zm00001eb195710 Zea mays
Zm00001eb218940 Zea mays
Zm00001eb280710 Zea mays
Zm00001eb330840 Zea mays
Zm00001eb405620 Zea mays
Zm00001eb414850 Zea mays

User provided reference genes

Program Settings