Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p37770 Brassica napus
A03p39840 Brassica napus
A03p58740 Brassica napus
A05p19220 Brassica napus
A05p33020 Brassica napus
A08p02490 Brassica napus
Aa31LG10G2850 Aethionema arabicum
Aa31LG2G21450 Aethionema arabicum
Aa31LG8G3620 Aethionema arabicum
Actinidia09009 Actinidia chinensis
Actinidia17518 Actinidia chinensis
Actinidia21720 Actinidia chinensis
Actinidia32103 Actinidia chinensis
Actinidia32104 Actinidia chinensis
Actinidia39132 Actinidia chinensis
Actinidia39779 Actinidia chinensis
Ah.01g005740 Amaranthus hybridus
Ah.01g017340 Amaranthus hybridus
Ah.09g230470 Amaranthus hybridus
Ah.14g083180 Amaranthus hybridus
AL1G60000 Arabidopsis lyrata
AL3G29310 Arabidopsis lyrata
AL7G23290 Arabidopsis lyrata
Aqoxy7G01391 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0B413X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1V4MQQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8F6PMG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HXS3HA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QNQ5U8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RL1N3D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W51A0D Arachis hypogaea
AT1G51960 Arabidopsis thaliana
AT3G16490 Arabidopsis thaliana
AT4G29150 Arabidopsis thaliana
ATR0705G022 Amborella trichopoda
Atru.chr1.3544 Acer truncatum
Atru.chr7.1474 Acer truncatum
AUR62010883 Chenopodium quinoa
AUR62021395 Chenopodium quinoa
AUR62022223 Chenopodium quinoa
AUR62031936 Chenopodium quinoa
BcaB02g11033 Brassica carinata
BcaB04g17177 Brassica carinata
BcaB04g17178 Brassica carinata
BcaB04g18900 Brassica carinata
BcaB06g25752 Brassica carinata
BcaC01g01297 Brassica carinata
BcaC01g03820 Brassica carinata
BcaC05g28871 Brassica carinata
BcaC08g43958 Brassica carinata
BcaC09g48610 Brassica carinata
BcaNung00460 Brassica carinata
BcaNung00461 Brassica carinata
BolC1t04748H Brassica oleracea
BolC3t17109H Brassica oleracea
BolC3t21356H Brassica oleracea
BolC5t33731H Brassica oleracea
BolC6t36523H Brassica oleracea
BolC7t46151H Brassica oleracea
BraA01t03838Z Brassica rapa
BraA03t13132Z Brassica rapa
BraA03t14937Z Brassica rapa
BraA05t20828Z Brassica rapa
BraA05t22127Z Brassica rapa
BraA08t32287Z Brassica rapa
C01p47810 Brassica napus
C03p48290 Brassica napus
C03p90350 Brassica napus
C05p49800 Brassica napus
C06p13570 Brassica napus
C06p13590 Brassica napus
C07p56690 Brassica napus
CAN.G1759.8 Capsicum annuum
CAN.G337.11 Capsicum annuum
CAN.G676.37 Capsicum annuum
CANSAT56G4240 Cannabis sativa
CARHR042120 Cardamine hirsuta
CARHR091700 Cardamine hirsuta
CARHR236880 Cardamine hirsuta
Carub.0001s4089 Capsella rubella
Carub.0003s1623 Capsella rubella
Carub.0007s1144 Capsella rubella
Ca_01169_v3 Cicer arietinum L.
Ca_17368_v3 Cicer arietinum L.
Ca_23277_v3 Cicer arietinum L.
Cc04_g02480 Coffea canephora
Cc06_g10560 Coffea canephora
CDE02G1868 Ceratophyllum demersum
CDE05G2076 Ceratophyllum demersum
CDE08G1552 Ceratophyllum demersum
Cfa003168 Carpinus fangiana
Ciclev10008287m.g Citrus clementina
Ciclev10025716m.g Citrus clementina
CiPaw.01G230700 Carya illinoinensis
CiPaw.02G145400 Carya illinoinensis
CiPaw.03G223500 Carya illinoinensis
CiPaw.04G155700 Carya illinoinensis
ClCG03G016090 Citrullus lanatus
ClCG07G013350 Citrullus lanatus
ClCG09G000250 Citrullus lanatus
COL.COLO4_30524 Corchorus olitorius
COL.COLO4_34731 Corchorus olitorius
Cpa.g.sc25.24 Carica papaya
Cpa.g.sc860.1 Carica papaya
CsaV3_1G039870 Cucumis sativus L.
CsaV3_3G023520 Cucumis sativus L.
CsaV3_7G035240 Cucumis sativus L.
CSS0004100 Camellia sinensis var. sinensis
CSS0005459 Camellia sinensis var. sinensis
CSS0031374 Camellia sinensis var. sinensis
CSS0046289 Camellia sinensis var. sinensis
CSS0049623 Camellia sinensis var. sinensis
CSS0049657 Camellia sinensis var. sinensis
DCAR_007588 Daucus carota
DCAR_016186 Daucus carota
DCAR_023082 Daucus carota
DCAR_026363 Daucus carota
DCAR_028654 Daucus carota
Dinv30430 Davidia involucrata
Dinv36679 Davidia involucrata
Dinv37970 Davidia involucrata
Dinv42252 Davidia involucrata
Dinv42253 Davidia involucrata
Duzib150G0601 Durio zibethinus
Duzib160G0515 Durio zibethinus
Duzib168G0392 Durio zibethinus
Duzib192G0553 Durio zibethinus
Duzib235G1419 Durio zibethinus
ECA232G1354 Erigeron canadensis
ECA234G2750 Erigeron canadensis
ECA234G4662 Erigeron canadensis
ECA236G1179 Erigeron canadensis
ECA236G2992 Erigeron canadensis
EL10Ac8g18371 Beta vulgaris
EL10Ac9g21198 Beta vulgaris
Eucgr.C00964 Eucalyptus grandis
Eucgr.C03722 Eucalyptus grandis
Eucgr.C03723 Eucalyptus grandis
Eucgr.F03081 Eucalyptus grandis
Eucgr.J02932 Eucalyptus grandis
FAN02G3534 Fragaria x ananassa
FAN05G1280 Fragaria x ananassa
FAN09G3205 Fragaria x ananassa
FAN14G1860 Fragaria x ananassa
FAN19G2947 Fragaria x ananassa
FAN23G1535 Fragaria x ananassa
FAN26G0463 Fragaria x ananassa
FAN26G2301 Fragaria x ananassa
FAN28G2615 Fragaria x ananassa
FvH4_1g06300 Fragaria vesca
FvH4_6g32490 Fragaria vesca
Glyma.01G007000 Glycine max
Glyma.05G226100 Glycine max
Glyma.07G014800 Glycine max
Glyma.07G124900 Glycine max
Glyma.08G033100 Glycine max
Glyma.08G200400 Glycine max
Glyma.13G353800 Glycine max
Glyma.15G020600 Glycine max
Gohir.A02G117100 Gossypium hirsutum
Gohir.A05G026200 Gossypium hirsutum
Gohir.A05G129600 Gossypium hirsutum
Gohir.A07G008800 Gossypium hirsutum
Gohir.A08G243200 Gossypium hirsutum
Gohir.D03G057700 Gossypium hirsutum
Gohir.D05G027700 Gossypium hirsutum
Gohir.D05G134200 Gossypium hirsutum
Gohir.D07G009100 Gossypium hirsutum
Gohir.D08G264100 Gossypium hirsutum
Gorai.001G009300 Gossypium raimondii
Gorai.003G061500 Gossypium raimondii
Gorai.004G282000 Gossypium raimondii
Gorai.009G027900 Gossypium raimondii
Gorai.009G137800 Gossypium raimondii
GSVIVG01015291001 Vitis vinifera
GSVIVG01016967001 Vitis vinifera
HanXRQChr06g0172181 Helianthus annuus
HanXRQChr09g0275681 Helianthus annuus
HanXRQChr10g0313181 Helianthus annuus
HanXRQChr12g0355151 Helianthus annuus
Haze_15856 Corylus avellana
Haze_25831 Corylus avellana
Hma1.2p1_0430F.1_g151310 Hydrangea macrophylla
HPP92_000626 Vanilla planifolia
HPP92_000627 Vanilla planifolia
HPP92_008719 Vanilla planifolia
HPP92_022967 Vanilla planifolia
HPP92_024068 Vanilla planifolia
Hund00726 Selenicereus undatus
Hund07611 Selenicereus undatus
Hund09097 Selenicereus undatus
Hund26284 Selenicereus undatus
Lalb_Chr01g0013201 Lupinus albus
Lalb_Chr04g0262981 Lupinus albus
Lalb_Chr05g0223281 Lupinus albus
Lalb_Chr14g0371931 Lupinus albus
Lalb_Chr14g0372981 Lupinus albus
Lalb_Chr24g0397231 Lupinus albus
Lj2g0013390 Lotus japonicus
Lj3g0013031 Lotus japonicus
Lj3g0015537 Lotus japonicus
Lj4A375T15 Lonicera japonica
Lj4g0023276 Lotus japonicus
Lj5C52T4 Lonicera japonica
Lj9C514T10 Lonicera japonica
Lju891A1T34 Lonicera japonica
Lsat_1_v5_gn_4_98261 Lactuca sativa
Lsat_1_v5_gn_5_134280 Lactuca sativa
Lsat_1_v5_gn_5_145120 Lactuca sativa
Lsat_1_v5_gn_8_88521 Lactuca sativa
Manes.03G026400 Manihot esculenta
Manes.04G134900 Manihot esculenta
Manes.11G032200 Manihot esculenta
Manes.11G032700 Manihot esculenta
Manes.11G032800 Manihot esculenta
Manes.16G109400 Manihot esculenta
MBI01_g10120_MAGBIO Magnolia biondii
MBI04_g46298_MAGBIO Magnolia biondii
MBI04_g46299_MAGBIO Magnolia biondii
MD02G1066900 Malus domestica
MD09G1201900 Malus domestica
MD15G1197400 Malus domestica
MD17G1182000 Malus domestica
Medtr2g100740 Medicago truncatula
Medtr8g014580 Medicago truncatula
Medtr8g102400 Medicago truncatula
MELO3C013004.2 Cucumis melo
MELO3C015418.2 Cucumis melo
MELO3C024434.2 Cucumis melo
Migut.D00986 Erythranthe guttata
Migut.I00958 Erythranthe guttata
Migut.J01093 Erythranthe guttata
Migut.K00546 Erythranthe guttata
MSTRG.19548 Avicennia marina
MSTRG.22632 Avicennia marina
MSTRG.4755 Avicennia marina
Nitab4.5_0000300g0190 Nicotiana tabacum
Nitab4.5_0000566g0190 Nicotiana tabacum
Nitab4.5_0001991g0010 Nicotiana tabacum
Nitab4.5_0003079g0110 Nicotiana tabacum
Nn2g10446 Nelumbo nucifera
Nn2g10784 Nelumbo nucifera
Nn3g19654 Nelumbo nucifera
Nn5g30787 Nelumbo nucifera
Nn6g35340 Nelumbo nucifera
Nn8g39050 Nelumbo nucifera
Oeu000345.1 Olea europaea
Oeu002527.1 Olea europaea
Oeu002529.1 Olea europaea
Oeu011488.1 Olea europaea
Oeu015774.1 Olea europaea
Oeu015785.1 Olea europaea
Oeu015813.1 Olea europaea
Oeu024260.1 Olea europaea
Oeu026768.1 Olea europaea
Os01g0190500 Oryza sativa ssp. japonica
Os01g0862500 Oryza sativa ssp. japonica
Os05g0187500 Oryza sativa ssp. japonica
Peaxi162Scf00207g01231 Petunia axillaris
Peaxi162Scf00944g00028 Petunia axillaris
PGR102G2632 Punica granatum
PGR102G3043 Punica granatum
PGR102G3116 Punica granatum
PGR142G2726 Punica granatum
PGSC0003DMG400000357 Solanum tuberosum
PGSC0003DMG400016520 Solanum tuberosum
Phvul.002G308100 Phaseolus vulgaris
Phvul.004G175300 Phaseolus vulgaris
Phvul.005G165500 Phaseolus vulgaris
Phvul.010G144700 Phaseolus vulgaris
Potri.001G190500 Populus trichocarpa
Potri.003G047800 Populus trichocarpa
Prupe.3G057500 Prunus persica
Prupe.7G218500 Prunus persica
Psat4g197040 Pisum sativum
Psat5g295560 Pisum sativum
Psat7g017400 Pisum sativum
PSO063G3125 Papaver somniferum
PSO210G3439 Papaver somniferum
PSO210G5477 Papaver somniferum
PSO832G2611 Papaver somniferum
QL02p041044 Quercus lobata
QL05p019702 Quercus lobata
RcHm_v2.0_Chr2g0092031 Rosa chinensis
RcHm_v2.0_Chr2g0140781 Rosa chinensis
Rhsim08G0228100 Rhododendron simsii
Sabra01G0151000 Salix brachista
Sabra03G0030300 Salix brachista
SalBow2G0944 Salvia bowleyana
SalBow6G2154 Salvia bowleyana
SalBow7G2379 Salvia bowleyana
Sc08g0008040 Simmondsia chinensis
Sc10g0007600 Simmondsia chinensis
Sc18g0001550 Simmondsia chinensis
Sed0004022 Sechium edule
Sed0011052 Sechium edule
Sed0014739 Sechium edule
Sed0018059 Sechium edule
Sed0022405 Sechium edule
SEGI_04071 Sequoiadendron giganteum
SGA_v2.0_scaffold265G46061 Striga asiatica
SGA_v2.0_scaffold4G02029 Striga asiatica
SGA_v2.0_scaffold68G22941 Striga asiatica
SGA_v2.0_scaffold883G53693 Striga asiatica
SHI32962 Sapria himalayana
Solyc06g066430.3 Solanum lycopersicum
Solyc12g008520.2 Solanum lycopersicum
Sopen06g024720 Solanum pennellii
Sopen12g003470 Solanum pennellii
Sp1g38600 Schrenkiella parvula
Sp3g14840 Schrenkiella parvula
Sp7g27070 Schrenkiella parvula
TAR383G0443 Trochodendron aralioides
TAR624G1441 Trochodendron aralioides
TAR626G0910 Trochodendron aralioides
THA.LOC104804002 Tarenaya hassleriana
THA.LOC104806011 Tarenaya hassleriana
THA.LOC104810543 Tarenaya hassleriana
THA.LOC104820211 Tarenaya hassleriana
Thecc.06G101000 Theobroma cacao
Thecc.09G099400 Theobroma cacao
Thhalv10012305m.g Eutrema salsugineum
Thhalv10020849m.g Eutrema salsugineum
Thhalv10025424m.g Eutrema salsugineum
TPR.G15139 Trifolium pratense
TPR.G15145 Trifolium pratense
TPR.G23446 Trifolium pratense
TPR.G6511 Trifolium pratense
TWI12G0691 Tripterygium wilfordii
TWI18G1002 Tripterygium wilfordii
TWI34G0119 Tripterygium wilfordii
unitig_22.g6624 Utricularia gibba
unitig_37.g12262 Utricularia gibba
unitig_46.g18565 Utricularia gibba
unitig_52.g17099 Utricularia gibba
unitig_62.g23757 Utricularia gibba
unitig_899.g14770 Utricularia gibba
vmacro10848 Vaccinium macrocarpon
vmacro18847 Vaccinium macrocarpon
VMungo0251G2873 Vigna mungo
VMungo0331G0853 Vigna mungo
VMungo0464G2197 Vigna mungo
VMungo1080G1148 Vigna mungo
Zm00001eb121390 Zea mays
Zm00001eb283520 Zea mays
Zm00001eb337540 Zea mays
Zm00001eb371170 Zea mays

User provided reference genes

Program Settings