Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p06660 Brassica napus
A05p43810 Brassica napus
A06p26390 Brassica napus
Aa31LG11G12170 Aethionema arabicum
Aa31LG5G13940 Aethionema arabicum
Aa31sc762G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3883 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4606 Anthoceros agrestis
Actinidia05990 Actinidia chinensis
Actinidia15926 Actinidia chinensis
Actinidia27009 Actinidia chinensis
Actinidia35197 Actinidia chinensis
Actinidia36117 Actinidia chinensis
Actinidia36366 Actinidia chinensis
Ah.16g101260 Amaranthus hybridus
AL3G13110 Arabidopsis lyrata
AL6G25260 Arabidopsis lyrata
AL9U12220 Arabidopsis lyrata
Aqoxy3G00130 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0T2LLH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E48QH9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HWBU4H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R1NTZK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T04HJJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X5LH2W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XF2TBK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZJ2IZL Arachis hypogaea
AT3G03440 Arabidopsis thaliana
AT4G12710 Arabidopsis thaliana
AT5G14510 Arabidopsis thaliana
ATR0053G031 Amborella trichopoda
ATR0751G217 Amborella trichopoda
Atru.chr1.1819 Acer truncatum
Atru.chr6.2405 Acer truncatum
Atru.chr6.3427 Acer truncatum
AUR62023186 Chenopodium quinoa
AUR62023233 Chenopodium quinoa
BcaB01g05109 Brassica carinata
BcaB01g05111 Brassica carinata
BcaC05g30269 Brassica carinata
BcaC05g30273 Brassica carinata
BcaC09g47747 Brassica carinata
BNapus_Darmor_BZH_scaffold_162p00160 Brassica napus
BNapus_Darmor_BZH_scaffold_78p00140 Brassica napus
BolC1t05830H Brassica oleracea
BolC3t13269H Brassica oleracea
BolC5t35003H Brassica oleracea
BraA01t04579Z Brassica rapa
BraA03t10000Z Brassica rapa
BraA05t23118Z Brassica rapa
C03p07690 Brassica napus
C05p63390 Brassica napus
CAN.G1057.6 Capsicum annuum
CAN.G1071.6 Capsicum annuum
CAN.G1161.49 Capsicum annuum
CAN.G625.88 Capsicum annuum
CANSAT54G1450 Cannabis sativa
CANSAT64G2839 Cannabis sativa
CARHR077460 Cardamine hirsuta
CARHR198800 Cardamine hirsuta
CARHR218050 Cardamine hirsuta
Carub.0003s0258 Capsella rubella
Carub.0006s1269 Capsella rubella
Carub.0007s3036 Capsella rubella
Ca_04165_v3 Cicer arietinum L.
Ca_05858_v3 Cicer arietinum L.
Ca_05863_v3 Cicer arietinum L.
Ca_08162_v3 Cicer arietinum L.
Ca_13024_v3 Cicer arietinum L.
Ca_17108_v3 Cicer arietinum L.
Cc00_g06490 Coffea canephora
Cc00_g27100 Coffea canephora
Cc00_g27930 Coffea canephora
Cc05_g02020 Coffea canephora
Cc07_g01610 Coffea canephora
Cc07_g08130 Coffea canephora
CDE06G0657 Ceratophyllum demersum
CDE07G0201 Ceratophyllum demersum
Cfa007363 Carpinus fangiana
Cfa007836 Carpinus fangiana
Cfa014205 Carpinus fangiana
Ciclev10012286m.g Citrus clementina
Ciclev10015636m.g Citrus clementina
Ciclev10017819m.g Citrus clementina
CiPaw.03G044300 Carya illinoinensis
CiPaw.03G069100 Carya illinoinensis
CiPaw.03G283500 Carya illinoinensis
CiPaw.04G046200 Carya illinoinensis
ClCG03G008710 Citrullus lanatus
COL.COLO4_15727 Corchorus olitorius
COL.COLO4_19650 Corchorus olitorius
COL.COLO4_29129 Corchorus olitorius
Cpa.g.c28186.3 Carica papaya
Cpa.g.sc108.72 Carica papaya
Cpa.g.sc108.73 Carica papaya
Cpa.g.sc136.49 Carica papaya
CsaV3_5G024010 Cucumis sativus L.
CSS0002483 Camellia sinensis var. sinensis
CSS0007019 Camellia sinensis var. sinensis
CSS0021343 Camellia sinensis var. sinensis
CSS0034863 Camellia sinensis var. sinensis
CSS0043365 Camellia sinensis var. sinensis
CSS0050411 Camellia sinensis var. sinensis
DCAR_021085 Daucus carota
DCAR_021455 Daucus carota
DCAR_025873 Daucus carota
Dinv05321 Davidia involucrata
Dinv14882 Davidia involucrata
Dinv19015 Davidia involucrata
Dinv21319 Davidia involucrata
Dinv25732 Davidia involucrata
Duzib133G0666 Durio zibethinus
Duzib133G0893 Durio zibethinus
Duzib138G0861 Durio zibethinus
Duzib147G1297 Durio zibethinus
Duzib211G0493 Durio zibethinus
ECA232G1037 Erigeron canadensis
ECA232G1609 Erigeron canadensis
ECA236G2224 Erigeron canadensis
ECA240G1335 Erigeron canadensis
ECA240G3694 Erigeron canadensis
ECA246G4468 Erigeron canadensis
EL10Ac2g04476 Beta vulgaris
Eucgr.F02829 Eucalyptus grandis
Eucgr.J02194 Eucalyptus grandis
Eucgr.J02196 Eucalyptus grandis
Eucgr.J02251 Eucalyptus grandis
Eucgr.K01391 Eucalyptus grandis
FAN02G1059 Fragaria x ananassa
FAN02G1396 Fragaria x ananassa
FAN05G1454 Fragaria x ananassa
FAN09G1376 Fragaria x ananassa
FAN09G2294 Fragaria x ananassa
FAN09G3361 Fragaria x ananassa
FAN14G3808 Fragaria x ananassa
FAN19G0114 Fragaria x ananassa
FAN23G2654 Fragaria x ananassa
FAN26G2438 Fragaria x ananassa
FAN28G1515 Fragaria x ananassa
FvH4_1g29130 Fragaria vesca
FvH4_6g40430 Fragaria vesca
Glyma.02G223100 Glycine max
Glyma.02G246500 Glycine max
Glyma.05G003300 Glycine max
Glyma.11G217800 Glycine max
Glyma.14G069600 Glycine max
Glyma.14G190000 Glycine max
Glyma.16G070300 Glycine max
Glyma.18G039100 Glycine max
Gohir.A07G076800 Gossypium hirsutum
Gohir.A07G163500 Gossypium hirsutum
Gohir.A07G223500 Gossypium hirsutum
Gohir.D07G081600 Gossypium hirsutum
Gohir.D07G170500 Gossypium hirsutum
Gohir.D07G230200 Gossypium hirsutum
Gorai.001G086700 Gossypium raimondii
Gorai.001G190700 Gossypium raimondii
Gorai.001G265500 Gossypium raimondii
GSVIVG01030122001 Vitis vinifera
GSVIVG01032397001 Vitis vinifera
HanXRQChr03g0074971 Helianthus annuus
HanXRQChr09g0255231 Helianthus annuus
HanXRQChr09g0262231 Helianthus annuus
HanXRQChr11g0324271 Helianthus annuus
HanXRQChr11g0329471 Helianthus annuus
HanXRQChr12g0375861 Helianthus annuus
HanXRQChr13g0389971 Helianthus annuus
Haze_12591 Corylus avellana
Haze_14229 Corylus avellana
Haze_14747 Corylus avellana
Hma1.2p1_0599F.1_g186990 Hydrangea macrophylla
Hma1.2p1_0832F.1_g225590 Hydrangea macrophylla
Hma1.2p1_0999F.1_g246110 Hydrangea macrophylla
HPP92_004875 Vanilla planifolia
HPP92_021914 Vanilla planifolia
Hund13687 Selenicereus undatus
Hund16207 Selenicereus undatus
Hund17346 Selenicereus undatus
Lalb_Chr02g0160541 Lupinus albus
Lalb_Chr10g0103131 Lupinus albus
Lalb_Chr15g0084781 Lupinus albus
Lalb_Chr18g0053341 Lupinus albus
Lj2A435T36 Lonicera japonica
Lj2g0006866 Lotus japonicus
Lj6g0013298 Lotus japonicus
Lj8C137G9 Lonicera japonica
LjContig00155g0023357 Lotus japonicus
Lju41A42T105 Lonicera japonica
Lsat_1_v5_gn_3_81460 Lactuca sativa
Lsat_1_v5_gn_4_154640 Lactuca sativa
Lsat_1_v5_gn_4_184081 Lactuca sativa
Lsat_1_v5_gn_7_97281 Lactuca sativa
Lsat_1_v5_gn_9_102560 Lactuca sativa
Manes.02G075000 Manihot esculenta
Manes.12G064300 Manihot esculenta
Manes.13G060201 Manihot esculenta
Manes.15G151300 Manihot esculenta
MBI10_g08536_MAGBIO Magnolia biondii
MBI14_g14416_MAGBIO Magnolia biondii
MBI14_g37015_MAGBIO Magnolia biondii
MBI16_g14299_MAGBIO Magnolia biondii
MD09G1024900 Malus domestica
MD09G1045000 Malus domestica
MD09G1130000 Malus domestica
MD09G1261900 Malus domestica
MD17G1026200 Malus domestica
MD17G1105200 Malus domestica
MD17G1119100 Malus domestica
MD17G1256900 Malus domestica
Medtr3g067685 Medicago truncatula
Medtr5g069340 Medicago truncatula
Medtr5g079550 Medicago truncatula
Medtr6g004790 Medicago truncatula
MELO3C013456.2 Cucumis melo
MELO3C022845.2 Cucumis melo
Migut.C01132 Erythranthe guttata
Migut.K01399 Erythranthe guttata
Migut.L00465 Erythranthe guttata
MSTRG.14904 Avicennia marina
MSTRG.23616 Avicennia marina
MSTRG.3517 Avicennia marina
Nitab4.5_0000036g0510 Nicotiana tabacum
Nitab4.5_0000465g0060 Nicotiana tabacum
Nitab4.5_0002366g0010 Nicotiana tabacum
Nitab4.5_0002529g0040 Nicotiana tabacum
Nitab4.5_0003086g0020 Nicotiana tabacum
Nitab4.5_0003360g0060 Nicotiana tabacum
Nitab4.5_0004399g0010 Nicotiana tabacum
Nitab4.5_0005354g0020 Nicotiana tabacum
Nitab4.5_0012657g0010 Nicotiana tabacum
Nn1g00083 Nelumbo nucifera
Nn1g07759 Nelumbo nucifera
Nn3g18223 Nelumbo nucifera
Nn4g22622 Nelumbo nucifera
Nn4g24145 Nelumbo nucifera
Oeu036995.1 Olea europaea
Oeu041354.1 Olea europaea
Oeu047416.1 Olea europaea
Oeu048613.1 Olea europaea
Os01g0112500 Oryza sativa ssp. japonica
Peaxi162Scf00003g00217 Petunia axillaris
Peaxi162Scf00080g01217 Petunia axillaris
Peaxi162Scf00118g00222 Petunia axillaris
Peaxi162Scf01164g00021 Petunia axillaris
PGR004G2639 Punica granatum
PGR083G2467 Punica granatum
PGSC0003DMG400006960 Solanum tuberosum
PGSC0003DMG400010393 Solanum tuberosum
PGSC0003DMG400016679 Solanum tuberosum
PGSC0003DMG400017386 Solanum tuberosum
PGSC0003DMG400030649 Solanum tuberosum
Phvul.001G231600 Phaseolus vulgaris
Phvul.004G006400 Phaseolus vulgaris
Phvul.008G189800 Phaseolus vulgaris
Phvul.008G234200 Phaseolus vulgaris
Potri.001G344200 Populus trichocarpa
Potri.004G088800 Populus trichocarpa
Potri.014G170100 Populus trichocarpa
Potri.017G128100 Populus trichocarpa
Prupe.3G159600 Prunus persica
Prupe.3G195100 Prunus persica
Prupe.3G292500 Prunus persica
Psat1g054280 Pisum sativum
Psat2g060360 Pisum sativum
Psat5g122560 Pisum sativum
PSO017G1108 Papaver somniferum
PSO017G1897 Papaver somniferum
PSO210G0041 Papaver somniferum
PSO210G1534 Papaver somniferum
PSO478G1384 Papaver somniferum
QL02p074384 Quercus lobata
QL02p074394 Quercus lobata
QL03p070033 Quercus lobata
QL04p067054 Quercus lobata
QL11p003983 Quercus lobata
RcHm_v2.0_Chr2g0155661 Rosa chinensis
RcHm_v2.0_Chr2g0173151 Rosa chinensis
RcHm_v2.0_Chr3g0493501 Rosa chinensis
RcHm_v2.0_Chr3g0493511 Rosa chinensis
Rhsim06G0178600 Rhododendron simsii
Rhsim08G0086200 Rhododendron simsii
Rhsim10G0079700 Rhododendron simsii
Sabra04G0059200 Salix brachista
Sabra14G0129600 Salix brachista
Sabra17G0106800 Salix brachista
SalBow1G8204 Salvia bowleyana
SalBow7G1690 Salvia bowleyana
SalBow7G3687 Salvia bowleyana
Sc10g0000780 Simmondsia chinensis
Sc11g0008640 Simmondsia chinensis
Sc16g0003200 Simmondsia chinensis
Sed0002464 Sechium edule
Sed0003840 Sechium edule
SEGI_12042 Sequoiadendron giganteum
SEGI_19824 Sequoiadendron giganteum
SEGI_31968 Sequoiadendron giganteum
SGA_v2.0_scaffold135G34909 Striga asiatica
SGA_v2.0_scaffold49G18146 Striga asiatica
SGA_v2.0_scaffold73G24481 Striga asiatica
SMO356G0647 Selaginella moellendorffii
Solyc02g063320.4 Solanum lycopersicum
Solyc02g067850.2 Solanum lycopersicum
Solyc02g091430.4 Solanum lycopersicum
Solyc03g043700.3 Solanum lycopersicum
Solyc07g045220.3 Solanum lycopersicum
Sopen02g014390 Solanum pennellii
Sopen02g016960 Solanum pennellii
Sopen02g036050 Solanum pennellii
Sopen03g007540 Solanum pennellii
Sopen07g023770 Solanum pennellii
Sp3g02440 Schrenkiella parvula
Sp6g29500 Schrenkiella parvula
Sp7g08880 Schrenkiella parvula
TAR371G1188 Trochodendron aralioides
TAR622G0699 Trochodendron aralioides
TAR629G1615 Trochodendron aralioides
THA.LOC104808836 Tarenaya hassleriana
THA.LOC104820835 Tarenaya hassleriana
THA.LOC104822407 Tarenaya hassleriana
THA.LOC104827238 Tarenaya hassleriana
Thecc.01G199100 Theobroma cacao
Thecc.04G018100 Theobroma cacao
Thecc.04G119600 Theobroma cacao
Thhalv10014090m.g Eutrema salsugineum
Thhalv10020852m.g Eutrema salsugineum
TPR.G13838 Trifolium pratense
TPR.G27146 Trifolium pratense
TPR.G33283 Trifolium pratense
TWI12G0264 Tripterygium wilfordii
TWI18G0602 Tripterygium wilfordii
TWI36G0264 Tripterygium wilfordii
TWI36G1586 Tripterygium wilfordii
TWI53G1739 Tripterygium wilfordii
TWI77G0770 Tripterygium wilfordii
unitig_26.g10393 Utricularia gibba
unitig_744.g24359 Utricularia gibba
unitig_899.g14521 Utricularia gibba
unitig_899.g14522 Utricularia gibba
vmacro05482 Vaccinium macrocarpon
vmacro05515 Vaccinium macrocarpon
vmacro12064 Vaccinium macrocarpon
vmacro18049 Vaccinium macrocarpon
VMungo0464G0341 Vigna mungo
VMungo0647G0398 Vigna mungo
VMungo0647G1099 Vigna mungo
VMungo1383G0124 Vigna mungo
Zm00001eb126230 Zea mays
Zm00001eb146820 Zea mays
Zm00001eb228210 Zea mays
Zm00001eb334600 Zea mays
Zm00001eb423030 Zea mays

User provided reference genes

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