Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p39450 Brassica napus
A03p38720 Brassica napus
A06p00720 Brassica napus
A06p00730 Brassica napus
A09p15510 Brassica napus
Aa31LG2G730 Aethionema arabicum
Aa31LG8G1530 Aethionema arabicum
Actinidia02019 Actinidia chinensis
Actinidia14549 Actinidia chinensis
Actinidia31149 Actinidia chinensis
Ah.08g217330 Amaranthus hybridus
Ah.12g057210 Amaranthus hybridus
Ah.12g057220 Amaranthus hybridus
Ah.15g094990 Amaranthus hybridus
AL1G62580 Arabidopsis lyrata
AL2G11820 Arabidopsis lyrata
AL3G26560 Arabidopsis lyrata
AL3G26570 Arabidopsis lyrata
Aqoxy7G04173 Aquilegia oxysepala
Aqoxy7G04175 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2JF5GX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6486U1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BLVN7J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G529J0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HN33BR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N47CAS Arachis hypogaea
AT1G53870 Arabidopsis thaliana
AT1G53875 Arabidopsis thaliana
AT1G53890 Arabidopsis thaliana
AT1G63410 Arabidopsis thaliana
AT3G14260 Arabidopsis thaliana
ATR0099G022 Amborella trichopoda
Atru.chr9.2208 Acer truncatum
Atru.chr9.2209 Acer truncatum
Atru.chr9.2210 Acer truncatum
Atru.chr9.2212 Acer truncatum
AUR62001412 Chenopodium quinoa
AUR62010612 Chenopodium quinoa
AUR62017257 Chenopodium quinoa
AUR62025621 Chenopodium quinoa
BcaB02g10880 Brassica carinata
BcaB04g18829 Brassica carinata
BcaB04g18830 Brassica carinata
BcaB07g31400 Brassica carinata
BcaB07g33284 Brassica carinata
BcaC01g03941 Brassica carinata
BcaC04g22486 Brassica carinata
BcaC08g43564 Brassica carinata
BcaC08g43565 Brassica carinata
BcaC09g48395 Brassica carinata
BolC1t04984H Brassica oleracea
BolC3t16952H Brassica oleracea
BolC6t36035H Brassica oleracea
BolC6t36037H Brassica oleracea
BolC9t54777H Brassica oleracea
BraA01t03986Z Brassica rapa
BraA03t13020Z Brassica rapa
BraA06t23305Z Brassica rapa
BraA06t23306Z Brassica rapa
BraA06t23307Z Brassica rapa
BraA09t37192Z Brassica rapa
C01p50300 Brassica napus
C03p46860 Brassica napus
C06p09630 Brassica napus
C06p09650 Brassica napus
C09p18770 Brassica napus
CAN.G26.12 Capsicum annuum
CAN.G792.85 Capsicum annuum
CAN.G859.15 Capsicum annuum
CAN.G859.16 Capsicum annuum
CANSAT21G0549 Cannabis sativa
CANSAT21G0805 Cannabis sativa
CANSAT21G1612 Cannabis sativa
CANSAT56G0765 Cannabis sativa
CARHR047940 Cardamine hirsuta
CARHR089190 Cardamine hirsuta
Carub.0001s4315 Capsella rubella
Carub.0002s0147 Capsella rubella
Carub.0003s1395 Capsella rubella
Ca_17546_v3 Cicer arietinum L.
Ca_23431_v3 Cicer arietinum L.
Cc08_g14440 Coffea canephora
Cc08_g14450 Coffea canephora
Cfa012151 Carpinus fangiana
Cfa012152 Carpinus fangiana
Cfa018964 Carpinus fangiana
Ciclev10023367m.g Citrus clementina
Ciclev10024046m.g Citrus clementina
Ciclev10024234m.g Citrus clementina
Ciclev10026945m.g Citrus clementina
CiPaw.11G042200 Carya illinoinensis
CiPaw.11G137800 Carya illinoinensis
CiPaw.11G137900 Carya illinoinensis
CiPaw.12G094800 Carya illinoinensis
CiPaw.12G094900 Carya illinoinensis
ClCG01G002890 Citrullus lanatus
ClCG01G002900 Citrullus lanatus
COL.COLO4_34434 Corchorus olitorius
COL.COLO4_34435 Corchorus olitorius
Cpa.g.sc56.96 Carica papaya
CsaV3_5G002980 Cucumis sativus L.
CsaV3_5G003000 Cucumis sativus L.
CSS0010093 Camellia sinensis var. sinensis
CSS0015535 Camellia sinensis var. sinensis
CSS0031039 Camellia sinensis var. sinensis
CSS0036852 Camellia sinensis var. sinensis
CSS0039454 Camellia sinensis var. sinensis
CSS0046594 Camellia sinensis var. sinensis
DCAR_000601 Daucus carota
DCAR_006746 Daucus carota
DCAR_008406 Daucus carota
DCAR_008407 Daucus carota
DCAR_008408 Daucus carota
Dinv38958 Davidia involucrata
Dinv38961 Davidia involucrata
Duzib068G1152 Durio zibethinus
Duzib068G1390 Durio zibethinus
Duzib084G0611 Durio zibethinus
Duzib205G1484 Durio zibethinus
Duzib205G1504 Durio zibethinus
Duzib235G0557 Durio zibethinus
ECA233G1282 Erigeron canadensis
ECA240G4778 Erigeron canadensis
EL10Ac5g12778 Beta vulgaris
EL10Ac5g12779 Beta vulgaris
EL10Ac7g16486 Beta vulgaris
EL10Ac7g16488 Beta vulgaris
Eucgr.C03188 Eucalyptus grandis
Eucgr.D01869 Eucalyptus grandis
FAN04G2814 Fragaria x ananassa
FAN08G1733 Fragaria x ananassa
FAN08G3541 Fragaria x ananassa
FAN13G0606 Fragaria x ananassa
FAN13G0760 Fragaria x ananassa
FAN18G1749 Fragaria x ananassa
FAN18G2521 Fragaria x ananassa
FvH4_5g02020 Fragaria vesca
FvH4_5g02030 Fragaria vesca
FvH4_6g35760 Fragaria vesca
Glyma.01G218200 Glycine max
Glyma.05G206200 Glycine max
Glyma.07G045500 Glycine max
Glyma.08G013100 Glycine max
Glyma.11G025000 Glycine max
Glyma.16G013400 Glycine max
Gohir.A05G141501 Gossypium hirsutum
Gohir.A08G180500 Gossypium hirsutum
Gohir.A12G227000 Gossypium hirsutum
Gohir.D05G143525 Gossypium hirsutum
Gohir.D05G143700 Gossypium hirsutum
Gohir.D08G199300 Gossypium hirsutum
Gohir.D12G229300 Gossypium hirsutum
Gorai.004G210100 Gossypium raimondii
Gorai.008G245600 Gossypium raimondii
Gorai.009G147600 Gossypium raimondii
GSVIVG01019780001 Vitis vinifera
GSVIVG01019781001 Vitis vinifera
HanXRQChr03g0087291 Helianthus annuus
HanXRQChr06g0165671 Helianthus annuus
HanXRQChr06g0165681 Helianthus annuus
HanXRQChr07g0187821 Helianthus annuus
HanXRQChr12g0384521 Helianthus annuus
HanXRQChr12g0384531 Helianthus annuus
HanXRQChr13g0416201 Helianthus annuus
HanXRQChr17g0533411 Helianthus annuus
Haze_07346 Corylus avellana
Haze_08880 Corylus avellana
Haze_08881 Corylus avellana
Hma1.2p1_0377F.1_g139260 Hydrangea macrophylla
Hma1.2p1_0377F.1_g139270 Hydrangea macrophylla
Hund18643 Selenicereus undatus
Lalb_Chr04g0261211 Lupinus albus
Lalb_Chr05g0224891 Lupinus albus
Lalb_Chr09g0333321 Lupinus albus
Lalb_Chr10g0101131 Lupinus albus
Lalb_Chr16g0377151 Lupinus albus
Lalb_Chr16g0389881 Lupinus albus
Lj2A188G43 Lonicera japonica
Lj2C188G10 Lonicera japonica
Lj2C188T9 Lonicera japonica
Lj3g0000559 Lotus japonicus
Lj4g0025214 Lotus japonicus
Lj8A232T66 Lonicera japonica
Lsat_1_v5_gn_3_7761 Lactuca sativa
Lsat_1_v5_gn_6_6861 Lactuca sativa
Lsat_1_v5_gn_6_87040 Lactuca sativa
Manes.01G063400 Manihot esculenta
Manes.01G063500 Manihot esculenta
Manes.02G023600 Manihot esculenta
Manes.02G023800 Manihot esculenta
Manes.04G150400 Manihot esculenta
MBI19_g32867_MAGBIO Magnolia biondii
MD06G1078800 Malus domestica
MD06G1080200 Malus domestica
MD06G1080400 Malus domestica
MD06G1080500 Malus domestica
MD06G1080600 Malus domestica
MD14G1099500 Malus domestica
MD14G1099700 Malus domestica
MD14G1101500 Malus domestica
MD14G1101600 Malus domestica
MD17G1153800 Malus domestica
Medtr0415s0060 Medicago truncatula
Medtr0559s0010 Medicago truncatula
Medtr0559s0020 Medicago truncatula
Medtr8g023060 Medicago truncatula
Medtr8g097370 Medicago truncatula
Medtr8g097380 Medicago truncatula
Medtr8g097390 Medicago truncatula
Medtr8g097400 Medicago truncatula
Medtr8g097410 Medicago truncatula
MELO3C005656.2 Cucumis melo
MELO3C005657.2 Cucumis melo
Migut.A00786 Erythranthe guttata
Migut.D00914 Erythranthe guttata
Migut.E01106 Erythranthe guttata
Migut.E01107 Erythranthe guttata
MSTRG.11996 Avicennia marina
MSTRG.25592 Avicennia marina
Nitab4.5_0000347g0150 Nicotiana tabacum
Nitab4.5_0000360g0110 Nicotiana tabacum
Nitab4.5_0000360g0120 Nicotiana tabacum
Nitab4.5_0001200g0180 Nicotiana tabacum
Nitab4.5_0001200g0200 Nicotiana tabacum
Nitab4.5_0001356g0070 Nicotiana tabacum
Nitab4.5_0001356g0100 Nicotiana tabacum
Nitab4.5_0001356g0110 Nicotiana tabacum
Nitab4.5_0003907g0010 Nicotiana tabacum
Nitab4.5_0004032g0010 Nicotiana tabacum
Nitab4.5_0004836g0060 Nicotiana tabacum
Nitab4.5_0009051g0020 Nicotiana tabacum
Nitab4.5_0010838g0010 Nicotiana tabacum
Nitab4.5_0011908g0010 Nicotiana tabacum
Nitab4.5_0011908g0020 Nicotiana tabacum
Nitab4.5_0015173g0010 Nicotiana tabacum
Nn1g01465 Nelumbo nucifera
Nn3g20270 Nelumbo nucifera
Nn3g21511 Nelumbo nucifera
Nn4g25783 Nelumbo nucifera
Nn6g33498 Nelumbo nucifera
Oeu009180.1 Olea europaea
Oeu036029.1 Olea europaea
Oeu041089.1 Olea europaea
Oeu048800.1 Olea europaea
Oeu059016.1 Olea europaea
Os01g0931600 Oryza sativa ssp. japonica
Os01g0931700 Oryza sativa ssp. japonica
Os07g0672600 Oryza sativa ssp. japonica
Peaxi162Scf00102g01537 Petunia axillaris
Peaxi162Scf00102g01553 Petunia axillaris
Peaxi162Scf00102g01554 Petunia axillaris
Peaxi162Scf00119g00313 Petunia axillaris
Peaxi162Scf00227g00008 Petunia axillaris
Peaxi162Scf00323g00931 Petunia axillaris
Peaxi162Scf00365g00930 Petunia axillaris
Peaxi162Scf00714g00012 Petunia axillaris
Peaxi162Scf00714g00013 Petunia axillaris
PGR031G3617 Punica granatum
PGSC0003DMG400003046 Solanum tuberosum
PGSC0003DMG400004266 Solanum tuberosum
PGSC0003DMG400005002 Solanum tuberosum
PGSC0003DMG400005818 Solanum tuberosum
PGSC0003DMG401012350 Solanum tuberosum
PGSC0003DMG402012350 Solanum tuberosum
Phvul.002G156100 Phaseolus vulgaris
Phvul.002G287800 Phaseolus vulgaris
Phvul.010G123600 Phaseolus vulgaris
Potri.001G106300 Populus trichocarpa
Potri.001G106400 Populus trichocarpa
Potri.003G072200 Populus trichocarpa
Potri.003G125200 Populus trichocarpa
Potri.003G125300 Populus trichocarpa
Prupe.5G096400 Prunus persica
Prupe.5G096500 Prunus persica
Prupe.5G096600 Prunus persica
Prupe.5G096700 Prunus persica
Prupe.5G096800 Prunus persica
Psat4g165680 Pisum sativum
Psat7g034640 Pisum sativum
Psat7g034720 Pisum sativum
Psat7g034760 Pisum sativum
Psat7g034840 Pisum sativum
Psat7g034880 Pisum sativum
Psat7g035160 Pisum sativum
Psat7g035280 Pisum sativum
Psat7g035320 Pisum sativum
PSO135G0722 Papaver somniferum
PSO135G0990 Papaver somniferum
PSO135G1016 Papaver somniferum
PSO724G0273 Papaver somniferum
PSO724G0786 Papaver somniferum
PSO724G0876 Papaver somniferum
QL10p016407 Quercus lobata
QL12p018175 Quercus lobata
QL12p018212 Quercus lobata
QL12p018227 Quercus lobata
RcHm_v2.0_Chr2g0147771 Rosa chinensis
RcHm_v2.0_Chr7g0198311 Rosa chinensis
RcHm_v2.0_Chr7g0198321 Rosa chinensis
RcHm_v2.0_Chr7g0198341 Rosa chinensis
Rhsim02G0226100 Rhododendron simsii
Sabra03G0043000 Salix brachista
Sabra03G0088600 Salix brachista
Sabra03G0088700 Salix brachista
SalBow1G4352 Salvia bowleyana
SalBow6G4455 Salvia bowleyana
SalBow7G0200 Salvia bowleyana
Sc12g0010910 Simmondsia chinensis
Sed0000962 Sechium edule
Sed0001435 Sechium edule
Sed0011911 Sechium edule
Sed0018628 Sechium edule
SEGI_01375 Sequoiadendron giganteum
SEGI_17878 Sequoiadendron giganteum
SEGI_23494 Sequoiadendron giganteum
SEGI_23860 Sequoiadendron giganteum
SEGI_30587 Sequoiadendron giganteum
SEGI_37696 Sequoiadendron giganteum
SGA_v2.0_scaffold253G45120 Striga asiatica
SGA_v2.0_scaffold385G50468 Striga asiatica
Solyc08g007980.3 Solanum lycopersicum
Solyc08g080750.4 Solanum lycopersicum
Solyc08g080760.2 Solanum lycopersicum
Solyc08g080770.3 Solanum lycopersicum
Solyc12g056305.1 Solanum lycopersicum
Solyc12g056310.2 Solanum lycopersicum
Sopen08g029070 Solanum pennellii
Sopen08g029080 Solanum pennellii
Sopen08g029090 Solanum pennellii
Sopen12g028860 Solanum pennellii
Sopen12g028870 Solanum pennellii
Sp1g40360 Schrenkiella parvula
Sp2g01200 Schrenkiella parvula
Sp3g12550 Schrenkiella parvula
TAR367G0007 Trochodendron aralioides
TAR367G0008 Trochodendron aralioides
TAR383G0777 Trochodendron aralioides
THA.LOC104809398 Tarenaya hassleriana
THA.LOC104822617 Tarenaya hassleriana
Thecc.03G276000 Theobroma cacao
Thecc.03G276100 Theobroma cacao
Thecc.06G129500 Theobroma cacao
Thhalv10022232m.g Eutrema salsugineum
Thhalv10023707m.g Eutrema salsugineum
TPR.G12813 Trifolium pratense
TPR.G12849 Trifolium pratense
TPR.G12952 Trifolium pratense
TPR.G39283 Trifolium pratense
TWI14G0341 Tripterygium wilfordii
TWI81G0428 Tripterygium wilfordii
vmacro11309 Vaccinium macrocarpon
VMungo0251G2397 Vigna mungo
VMungo0331G1485 Vigna mungo
VMungo1215G1837 Vigna mungo
Zm00001eb016550 Zea mays
Zm00001eb142330 Zea mays
Zm00001eb142340 Zea mays
Zm00001eb363550 Zea mays
Zm00001eb363560 Zea mays
Zm00001eb363570 Zea mays

User provided reference genes

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