Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p06090 Brassica napus
A03p10580 Brassica napus
A03p61310 Brassica napus
A04p07320 Brassica napus
A06p22200 Brassica napus
A06p36070 Brassica napus
A09p45120 Brassica napus
Aa31LG1G13340 Aethionema arabicum
Aa31sc201G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5541 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5542 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5543 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5544 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5545 Anthoceros agrestis
Actinidia13232 Actinidia chinensis
Actinidia22342 Actinidia chinensis
Actinidia24260 Actinidia chinensis
Actinidia31112 Actinidia chinensis
Actinidia34734 Actinidia chinensis
Ah.15g098880 Amaranthus hybridus
Ah.16g104390 Amaranthus hybridus
AL5G32610 Arabidopsis lyrata
AL6G33040 Arabidopsis lyrata
AL6G37060 Arabidopsis lyrata
AL7G19550 Arabidopsis lyrata
Aqoxy1G00629 Aquilegia oxysepala
Aqoxy7G02276 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03B6QV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1G7GSU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2X1NQK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.39K1JV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AR5SA1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HAPN95 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IB4S38 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KVDJ3V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LPX793 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UJP5WC Arachis hypogaea
AT3G52060 Arabidopsis thaliana
AT4G32290 Arabidopsis thaliana
AT5G22070 Arabidopsis thaliana
AT5G25330 Arabidopsis thaliana
ATR0697G109 Amborella trichopoda
Atru.chr12.1079 Acer truncatum
Atru.chr3.3096 Acer truncatum
Atru.chr7.2432 Acer truncatum
AUR62001565 Chenopodium quinoa
AUR62012401 Chenopodium quinoa
AUR62020218 Chenopodium quinoa
AUR62031505 Chenopodium quinoa
BcaB01g00450 Brassica carinata
BcaB01g01197 Brassica carinata
BcaB01g04744 Brassica carinata
BcaC01g02080 Brassica carinata
BcaC01g06606 Brassica carinata
BcaC02g09286 Brassica carinata
BcaC09g52011 Brassica carinata
BcaNung02273 Brassica carinata
BcaNung02276 Brassica carinata
BcaNung03215 Brassica carinata
BcaNung03581 Brassica carinata
BcaNung06965 Brassica carinata
BcaNung06966 Brassica carinata
BolC3t13690H Brassica oleracea
BolC3t19133H Brassica oleracea
BolC4t25676H Brassica oleracea
BolC7t44780H Brassica oleracea
BolC7t46366H Brassica oleracea
BolC8t50348H Brassica oleracea
BraA01t00573Z Brassica rapa
BraA03t10370Z Brassica rapa
BraA03t15175Z Brassica rapa
BraA04t16427Z Brassica rapa
BraA06t25308Z Brassica rapa
BraA06t26528Z Brassica rapa
BraA09t39973Z Brassica rapa
C01p06700 Brassica napus
C03p12170 Brassica napus
C03p68790 Brassica napus
C04p40930 Brassica napus
C07p42510 Brassica napus
C07p59150 Brassica napus
C08p27310 Brassica napus
CAN.G143.45 Capsicum annuum
CAN.G1463.10 Capsicum annuum
CAN.G186.59 Capsicum annuum
CAN.G742.31 Capsicum annuum
CANSAT25G0783 Cannabis sativa
CANSAT54G1593 Cannabis sativa
CARHR161750 Cardamine hirsuta
CARHR191460 Cardamine hirsuta
CARHR240190 Cardamine hirsuta
Carub.0005s1838 Capsella rubella
Carub.0006s1971 Capsella rubella
Carub.0006s2315 Capsella rubella
Carub.0007s0829 Capsella rubella
Ca_01627_v3 Cicer arietinum L.
Ca_12304_v3 Cicer arietinum L.
Cc01_g07770 Coffea canephora
Cc02_g09330 Coffea canephora
Cc08_g00590 Coffea canephora
CDE04G3386 Ceratophyllum demersum
CDE07G1339 Ceratophyllum demersum
Cfa010520 Carpinus fangiana
Cfa013142 Carpinus fangiana
Ciclev10010719m.g Citrus clementina
Ciclev10015736m.g Citrus clementina
CiPaw.08G011000 Carya illinoinensis
CiPaw.13G044100 Carya illinoinensis
CiPaw.14G035000 Carya illinoinensis
CiPaw.14G093300 Carya illinoinensis
ClCG03G011970 Citrullus lanatus
ClCG08G008420 Citrullus lanatus
ClCG08G013400 Citrullus lanatus
COL.COLO4_18862 Corchorus olitorius
COL.COLO4_25417 Corchorus olitorius
Cpa.g.sc103.22 Carica papaya
Cpa.g.sc954.2 Carica papaya
CsaV3_1G043960 Cucumis sativus L.
CsaV3_2G032140 Cucumis sativus L.
CsaV3_6G004400 Cucumis sativus L.
CSS0002806 Camellia sinensis var. sinensis
CSS0016124 Camellia sinensis var. sinensis
CSS0021140 Camellia sinensis var. sinensis
CSS0047749 Camellia sinensis var. sinensis
DCAR_006186 Daucus carota
DCAR_006215 Daucus carota
DCAR_028773 Daucus carota
Dinv08422 Davidia involucrata
Dinv16089 Davidia involucrata
Dinv18852 Davidia involucrata
Dinv30131 Davidia involucrata
Dinv33546 Davidia involucrata
Duzib106G0140 Durio zibethinus
Duzib150G0222 Durio zibethinus
Duzib168G1927 Durio zibethinus
Duzib168G2046 Durio zibethinus
Duzib170G0063 Durio zibethinus
ECA234G0354 Erigeron canadensis
ECA238G0941 Erigeron canadensis
ECA240G0935 Erigeron canadensis
EL10Ac2g04234 Beta vulgaris
EL10Ac4g08725 Beta vulgaris
EL10Ac7g16283 Beta vulgaris
Eucgr.J00291 Eucalyptus grandis
FAN15G1772 Fragaria x ananassa
FAN15G3667 Fragaria x ananassa
FAN20G0324 Fragaria x ananassa
FAN20G1117 Fragaria x ananassa
FAN24G0247 Fragaria x ananassa
FAN24G3343 Fragaria x ananassa
FAN27G0028 Fragaria x ananassa
FAN27G2979 Fragaria x ananassa
FvH4_2g09440 Fragaria vesca
FvH4_2g29000 Fragaria vesca
Glyma.10G121506 Glycine max
Glyma.12G189800 Glycine max
Glyma.13G311800 Glycine max
Glyma.14G116300 Glycine max
Glyma.17G211400 Glycine max
Glyma.20G071600 Glycine max
Gohir.A05G077700 Gossypium hirsutum
Gohir.A06G098400 Gossypium hirsutum
Gohir.A10G196900 Gossypium hirsutum
Gohir.A13G181400 Gossypium hirsutum
Gohir.D05G080500 Gossypium hirsutum
Gohir.D06G100500 Gossypium hirsutum
Gohir.D06G177700 Gossypium hirsutum
Gohir.D10G203900 Gossypium hirsutum
Gohir.D13G189200 Gossypium hirsutum
Gorai.009G082200 Gossypium raimondii
Gorai.010G115500 Gossypium raimondii
Gorai.011G228800 Gossypium raimondii
Gorai.013G214700 Gossypium raimondii
Gorai.N007600 Gossypium raimondii
GSVIVG01034592001 Vitis vinifera
GSVIVG01035863001 Vitis vinifera
GSVIVG01037594001 Vitis vinifera
HanXRQChr03g0091171 Helianthus annuus
HanXRQChr10g0294841 Helianthus annuus
HanXRQChr12g0368301 Helianthus annuus
HanXRQChr15g0489531 Helianthus annuus
Haze_03460 Corylus avellana
Haze_21515 Corylus avellana
Haze_23579 Corylus avellana
Hma1.2p1_0101F.1_g049610 Hydrangea macrophylla
Hma1.2p1_0243F.1_g100830 Hydrangea macrophylla
Hma1.2p1_0926F.1_g237570 Hydrangea macrophylla
HPP92_019546 Vanilla planifolia
Lalb_Chr01g0005851 Lupinus albus
Lalb_Chr03g0036561 Lupinus albus
Lalb_Chr11g0063701 Lupinus albus
Lalb_Chr14g0375941 Lupinus albus
Lalb_Chr19g0128961 Lupinus albus
Lj1g0023386 Lotus japonicus
Lj2A953T32 Lonicera japonica
Lj2C35T15 Lonicera japonica
Lj3g0023971 Lotus japonicus
Lj6g0028030 Lotus japonicus
Lj7P723T12 Lonicera japonica
Lsat_1_v5_gn_2_105941 Lactuca sativa
Lsat_1_v5_gn_2_35301 Lactuca sativa
Lsat_1_v5_gn_3_115041 Lactuca sativa
Lsat_1_v5_gn_5_109580 Lactuca sativa
Lsat_1_v5_gn_8_21761 Lactuca sativa
Manes.03G014600 Manihot esculenta
Manes.04G062900 Manihot esculenta
Manes.10G060200 Manihot esculenta
Mapoly0077s0022 Marchantia polymorpha
Mapoly0115s0043 Marchantia polymorpha
MBI04_g29336_MAGBIO Magnolia biondii
MBI11_g02025_MAGBIO Magnolia biondii
MD00G1144500 Malus domestica
MD03G1158600 Malus domestica
Medtr1g031060 Medicago truncatula
Medtr1g031080 Medicago truncatula
Medtr1g048320 Medicago truncatula
Medtr2g087610 Medicago truncatula
Medtr3g106930 Medicago truncatula
MELO3C011265.2 Cucumis melo
MELO3C015039.2 Cucumis melo
MELO3C019912.2 Cucumis melo
Migut.A00040 Erythranthe guttata
Migut.D02457 Erythranthe guttata
Migut.F01580 Erythranthe guttata
Migut.N02442 Erythranthe guttata
MSTRG.17677 Avicennia marina
MSTRG.18792 Avicennia marina
Nitab4.5_0000441g0010 Nicotiana tabacum
Nitab4.5_0001606g0030 Nicotiana tabacum
Nitab4.5_0001781g0120 Nicotiana tabacum
Nitab4.5_0001957g0010 Nicotiana tabacum
Nitab4.5_0003927g0010 Nicotiana tabacum
Nitab4.5_0007186g0030 Nicotiana tabacum
Nitab4.5_0007359g0010 Nicotiana tabacum
Nitab4.5_0010244g0010 Nicotiana tabacum
Nitab4.5_0011157g0010 Nicotiana tabacum
Nn1g06412 Nelumbo nucifera
Nn2g12074 Nelumbo nucifera
Nn2g14355 Nelumbo nucifera
Nn2g14356 Nelumbo nucifera
Nn3g19449 Nelumbo nucifera
Nn6g34629 Nelumbo nucifera
Nn7g35967 Nelumbo nucifera
Nn8g39494 Nelumbo nucifera
Oeu009034.1 Olea europaea
Oeu024804.1 Olea europaea
Oeu029077.1 Olea europaea
Oeu048829.1 Olea europaea
Oeu060154.1 Olea europaea
Os03g0648100 Oryza sativa ssp. japonica
Os07g0158800 Oryza sativa ssp. japonica
Os12g0618800 Oryza sativa ssp. japonica
Peaxi162Scf00058g00281 Petunia axillaris
Peaxi162Scf00098g00814 Petunia axillaris
Peaxi162Scf00120g01512 Petunia axillaris
Peaxi162Scf00135g00132 Petunia axillaris
Peaxi162Scf00429g00130 Petunia axillaris
PGR044G1176 Punica granatum
PGR044G2102 Punica granatum
PGR102G1147 Punica granatum
PGR119G1489 Punica granatum
PGSC0003DMG400002000 Solanum tuberosum
PGSC0003DMG400005902 Solanum tuberosum
PGSC0003DMG400025432 Solanum tuberosum
PGSC0003DMG402003005 Solanum tuberosum
Phvul.005G118301 Phaseolus vulgaris
Phvul.007G234200 Phaseolus vulgaris
Potri.001G215400 Populus trichocarpa
Potri.006G254800 Populus trichocarpa
Potri.008G018600 Populus trichocarpa
Potri.009G017300 Populus trichocarpa
Potri.010G242900 Populus trichocarpa
Prupe.1G481400 Prunus persica
Prupe.2G072800 Prunus persica
Prupe.6G029200 Prunus persica
Prupe.6G146600 Prunus persica
Prupe.7G026200 Prunus persica
Psat5g262400 Pisum sativum
Psat6g049200 Pisum sativum
PSO135G0235 Papaver somniferum
PSO170G2042 Papaver somniferum
PSO339G1534 Papaver somniferum
PSO384G1705 Papaver somniferum
PSO384G2629 Papaver somniferum
PSO384G4324 Papaver somniferum
PSO782G0114 Papaver somniferum
QL01p019334 Quercus lobata
QL04p048031 Quercus lobata
RcHm_v2.0_Chr5g0048971 Rosa chinensis
RcHm_v2.0_Chr6g0297881 Rosa chinensis
Rhsim02G0201400 Rhododendron simsii
Rhsim07G0200000 Rhododendron simsii
Rhsim09G0140800 Rhododendron simsii
Rhsim13G0197300 Rhododendron simsii
RhsimUnG0073700 Rhododendron simsii
Sabra08G0012100 Salix brachista
Sabra10G0189900 Salix brachista
Sabra16G0128100 Salix brachista
SalBow3G4271 Salvia bowleyana
SalBow4G1492 Salvia bowleyana
SalBow6G3404 Salvia bowleyana
Sc09g0005070 Simmondsia chinensis
Sc12g0000340 Simmondsia chinensis
Sc23g0006720 Simmondsia chinensis
Sed0000202 Sechium edule
Sed0006407 Sechium edule
Sed0019674 Sechium edule
SGA_v2.0_scaffold100G29610 Striga asiatica
SGA_v2.0_scaffold13G06423 Striga asiatica
SGA_v2.0_scaffold20G09124 Striga asiatica
SGA_v2.0_scaffold22G09815 Striga asiatica
SGA_v2.0_scaffold64G21936 Striga asiatica
SGA_v2.0_scaffold64G21938 Striga asiatica
SHI25262 Sapria himalayana
SMO197G0101 Selaginella moellendorffii
Solyc04g009760.2 Solanum lycopersicum
Solyc06g073970.3 Solanum lycopersicum
Solyc11g006470.2 Solanum lycopersicum
Solyc11g071850.1 Solanum lycopersicum
Sopen04g004860 Solanum pennellii
Sopen06g030370 Solanum pennellii
Sopen11g002360 Solanum pennellii
Sopen11g029520 Solanum pennellii
Sp2g22210 Schrenkiella parvula
Sp5g10240 Schrenkiella parvula
Sp6g23120 Schrenkiella parvula
Sp7g30050 Schrenkiella parvula
TAR369G0574 Trochodendron aralioides
TAR625G0810 Trochodendron aralioides
TAR633G0873 Trochodendron aralioides
TAR636G2189 Trochodendron aralioides
THA.LOC104799235 Tarenaya hassleriana
THA.LOC104799570 Tarenaya hassleriana
THA.LOC104810938 Tarenaya hassleriana
Thecc.09G024500 Theobroma cacao
Thecc.09G270600 Theobroma cacao
Thecc.10G117700 Theobroma cacao
Thhalv10004452m.g Eutrema salsugineum
Thhalv10010507m.g Eutrema salsugineum
Thhalv10013910m.g Eutrema salsugineum
Thhalv10025453m.g Eutrema salsugineum
TPR.G19806 Trifolium pratense
TPR.G3120 Trifolium pratense
TPR.G4159 Trifolium pratense
TWI31G0089 Tripterygium wilfordii
TWI34G0973 Tripterygium wilfordii
TWI63G1236 Tripterygium wilfordii
unitig_22.g5677 Utricularia gibba
unitig_22.g5682 Utricularia gibba
unitig_22.g6162 Utricularia gibba
unitig_46.g18646 Utricularia gibba
unitig_746.g26614 Utricularia gibba
unitig_8.g2979 Utricularia gibba
unitig_8.g3657 Utricularia gibba
vmacro05175 Vaccinium macrocarpon
vmacro10325 Vaccinium macrocarpon
vmacro11176 Vaccinium macrocarpon
vmacro11177 Vaccinium macrocarpon
VMungo0720G1680 Vigna mungo
Zm00001eb032020 Zea mays
Zm00001eb218590 Zea mays
Zm00001eb300280 Zea mays

User provided reference genes

Program Settings