Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06550 Brassica napus
A03p11290 Brassica napus
A03p20430 Brassica napus
A05p08760 Brassica napus
A09p46360 Brassica napus
Aa31LG10G8530 Aethionema arabicum
Aa31LG1G12370 Aethionema arabicum
Aa31LG5G22360 Aethionema arabicum
Actinidia03751 Actinidia chinensis
Actinidia11224 Actinidia chinensis
Actinidia19713 Actinidia chinensis
Ah.01g014890 Amaranthus hybridus
Ah.13g076380 Amaranthus hybridus
AL4G33430 Arabidopsis lyrata
AL5G34260 Arabidopsis lyrata
AL8G36820 Arabidopsis lyrata
Aqoxy2G01872 Aquilegia oxysepala
Aqoxy2G01874 Aquilegia oxysepala
Aqoxy4G03196 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3WQI06 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AAN9CD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C0K4NA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C2L54K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G3522P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HJ42P8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VB4B3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X9H47S Arachis hypogaea
AT2G37080 Arabidopsis thaliana
AT3G53350 Arabidopsis thaliana
AT5G60210 Arabidopsis thaliana
ATR1159G041 Amborella trichopoda
Atru.chr3.3716 Acer truncatum
Atru.chr3.3717 Acer truncatum
Atru.chr8.2558 Acer truncatum
AUR62006504 Chenopodium quinoa
AUR62025028 Chenopodium quinoa
AUR62040022 Chenopodium quinoa
AUR62043154 Chenopodium quinoa
BcaB01g00285 Brassica carinata
BcaB01g00286 Brassica carinata
BcaB01g00287 Brassica carinata
BcaB01g00288 Brassica carinata
BcaB01g03791 Brassica carinata
BcaB01g04645 Brassica carinata
BcaB02g09305 Brassica carinata
BcaB05g22628 Brassica carinata
BcaC01g05630 Brassica carinata
BcaC02g11833 Brassica carinata
BcaC03g13986 Brassica carinata
BcaC04g19666 Brassica carinata
BcaC04g19667 Brassica carinata
BcaC07g39707 Brassica carinata
BolC2t07278H Brassica oleracea
BolC3t13763H Brassica oleracea
BolC3t14793H Brassica oleracea
BolC4t22680H Brassica oleracea
BolC8t50473H Brassica oleracea
BraA02t05738Z Brassica rapa
BraA03t10441Z Brassica rapa
BraA03t11286Z Brassica rapa
BraA05t19844Z Brassica rapa
BraA09t40101Z Brassica rapa
C02p11840 Brassica napus
C03p13000 Brassica napus
C03p24020 Brassica napus
C04p10880 Brassica napus
C08p28680 Brassica napus
CAN.G552.2 Capsicum annuum
CAN.G608.3 Capsicum annuum
CAN.G915.11 Capsicum annuum
CAN.G915.9 Capsicum annuum
CAN.G933.6 Capsicum annuum
CANSAT54G0448 Cannabis sativa
CANSAT80G0496 Cannabis sativa
CARHR118670 Cardamine hirsuta
CARHR131590 Cardamine hirsuta
CARHR163220 Cardamine hirsuta
CARHR273890 Cardamine hirsuta
CARHR293230 Cardamine hirsuta
Carub.0004s1896 Capsella rubella
Carub.0005s1878 Capsella rubella
Carub.0005s1990 Capsella rubella
Carub.0008s2096 Capsella rubella
Ca_01435_v3 Cicer arietinum L.
Ca_08827_v3 Cicer arietinum L.
Ca_11453_v3 Cicer arietinum L.
Ca_22405_v3 Cicer arietinum L.
Ca_22809_v3 Cicer arietinum L.
Ca_28261_v3 Cicer arietinum L.
Cc01_g11650 Coffea canephora
Cc11_g02980 Coffea canephora
CDE02G3314 Ceratophyllum demersum
CDE09G1283 Ceratophyllum demersum
Cfa011374 Carpinus fangiana
Cfa017510 Carpinus fangiana
Ciclev10011300m.g Citrus clementina
Ciclev10027972m.g Citrus clementina
CiPaw.09G179900 Carya illinoinensis
CiPaw.13G106000 Carya illinoinensis
CiPaw.14G077200 Carya illinoinensis
ClCG02G020880 Citrullus lanatus
ClCG03G002420 Citrullus lanatus
ClCG04G008820 Citrullus lanatus
ClCG10G020540 Citrullus lanatus
COL.COLO4_25260 Corchorus olitorius
COL.COLO4_27078 Corchorus olitorius
Cpa.g.sc318.2 Carica papaya
Cpa.g.sc45.32 Carica papaya
CsaV3_1G013090 Cucumis sativus L.
CsaV3_3G035570 Cucumis sativus L.
CsaV3_4G024320 Cucumis sativus L.
CsaV3_6G021550 Cucumis sativus L.
CSS0014481 Camellia sinensis var. sinensis
CSS0026079 Camellia sinensis var. sinensis
CSS0033261 Camellia sinensis var. sinensis
CSS0049299 Camellia sinensis var. sinensis
DCAR_002495 Daucus carota
DCAR_006038 Daucus carota
DCAR_020874 Daucus carota
Dinv01987 Davidia involucrata
Dinv32802 Davidia involucrata
Dinv35711 Davidia involucrata
Dinv37254 Davidia involucrata
Duzib093G0204 Durio zibethinus
Duzib106G0137 Durio zibethinus
Duzib128G0466 Durio zibethinus
Duzib150G1393 Durio zibethinus
Duzib168G0376 Durio zibethinus
Duzib170G0124 Durio zibethinus
ECA233G2621 Erigeron canadensis
ECA233G5130 Erigeron canadensis
ECA238G3371 Erigeron canadensis
EL10Ac7g17354 Beta vulgaris
EL10Ac9g22420 Beta vulgaris
Eucgr.B02460 Eucalyptus grandis
Eucgr.K03212 Eucalyptus grandis
FAN05G1417 Fragaria x ananassa
FAN05G3487 Fragaria x ananassa
FAN09G4646 Fragaria x ananassa
FAN11G0949 Fragaria x ananassa
FAN14G2440 Fragaria x ananassa
FAN16G2424 Fragaria x ananassa
FAN21G0691 Fragaria x ananassa
FAN25G0821 Fragaria x ananassa
FvH4_3g33632 Fragaria vesca
FvH4_6g15372 Fragaria vesca
Glyma.03G178100 Glycine max
Glyma.10G049600 Glycine max
Glyma.11G151915 Glycine max
Glyma.12G072200 Glycine max
Glyma.13G137200 Glycine max
Glyma.13G328900 Glycine max
Glyma.15G044900 Glycine max
Glyma.19G178900 Glycine max
Gohir.A01G217000 Gossypium hirsutum
Gohir.A04G076700 Gossypium hirsutum
Gohir.A05G075000 Gossypium hirsutum
Gohir.A09G105600 Gossypium hirsutum
Gohir.A09G151900 Gossypium hirsutum
Gohir.D01G205700 Gossypium hirsutum
Gohir.D04G115700 Gossypium hirsutum
Gohir.D05G077800 Gossypium hirsutum
Gohir.D09G102400 Gossypium hirsutum
Gohir.D09G147500 Gossypium hirsutum
Gorai.002G250100 Gossypium raimondii
Gorai.004G066300 Gossypium raimondii
Gorai.006G121200 Gossypium raimondii
Gorai.006G168600 Gossypium raimondii
Gorai.009G079300 Gossypium raimondii
Gorai.009G420300 Gossypium raimondii
GSVIVG01025121001 Vitis vinifera
GSVIVG01025630001 Vitis vinifera
HanXRQChr02g0051921 Helianthus annuus
HanXRQChr07g0195661 Helianthus annuus
HanXRQChr08g0214091 Helianthus annuus
HanXRQChr13g0401761 Helianthus annuus
HanXRQChr14g0454681 Helianthus annuus
Haze_20647 Corylus avellana
Haze_23938 Corylus avellana
Hma1.2p1_0350F.1_g132750 Hydrangea macrophylla
Hma1.2p1_2156F.1_g315400 Hydrangea macrophylla
HPP92_001037 Vanilla planifolia
HPP92_001038 Vanilla planifolia
HPP92_012058 Vanilla planifolia
Hund08173 Selenicereus undatus
Hund20172 Selenicereus undatus
Lalb_Chr01g0004121 Lupinus albus
Lalb_Chr01g0019011 Lupinus albus
Lalb_Chr02g0156341 Lupinus albus
Lalb_Chr03g0027061 Lupinus albus
Lalb_Chr06g0171431 Lupinus albus
Lalb_Chr14g0374821 Lupinus albus
Lalb_Chr19g0137441 Lupinus albus
Lalb_Chr21g0314691 Lupinus albus
Lalb_Chr24g0394421 Lupinus albus
Lj1A183T51 Lonicera japonica
Lj2C1038G2 Lonicera japonica
Lj2C1038T4 Lonicera japonica
Lj3E979T3 Lonicera japonica
Lj3g0000964 Lotus japonicus
Lj3g0007552 Lotus japonicus
Lj3g0014525 Lotus japonicus
Lj3g0015919 Lotus japonicus
Lj3g0027820 Lotus japonicus
Lj5g0006568 Lotus japonicus
Lsat_1_v5_gn_2_109580 Lactuca sativa
Lsat_1_v5_gn_2_25400 Lactuca sativa
Lsat_1_v5_gn_6_24000 Lactuca sativa
Lsat_1_v5_gn_6_29721 Lactuca sativa
Manes.04G026300 Manihot esculenta
Manes.08G003600 Manihot esculenta
Manes.09G080900 Manihot esculenta
Manes.11G140400 Manihot esculenta
MBI14_g13893_MAGBIO Magnolia biondii
MBI14_g17614_MAGBIO Magnolia biondii
MD03G1110200 Malus domestica
MD04G1104300 Malus domestica
MD11G1123900 Malus domestica
MD12G1124200 Malus domestica
Medtr1g066850 Medicago truncatula
Medtr2g093240 Medicago truncatula
Medtr2g093250 Medicago truncatula
Medtr2g093260 Medicago truncatula
Medtr4g461060 Medicago truncatula
Medtr7g061150 Medicago truncatula
Medtr7g100730 Medicago truncatula
MELO3C005002.2 Cucumis melo
MELO3C009316.2 Cucumis melo
MELO3C014260.2 Cucumis melo
MELO3C025740.2 Cucumis melo
Migut.J00417 Erythranthe guttata
Migut.L01661 Erythranthe guttata
Migut.N02628 Erythranthe guttata
Migut.O00709 Erythranthe guttata
MSTRG.10298 Avicennia marina
MSTRG.17858 Avicennia marina
MSTRG.19139 Avicennia marina
MSTRG.21148 Avicennia marina
MSTRG.26725 Avicennia marina
Nitab4.5_0000754g0110 Nicotiana tabacum
Nitab4.5_0000888g0210 Nicotiana tabacum
Nitab4.5_0001142g0100 Nicotiana tabacum
Nitab4.5_0003895g0040 Nicotiana tabacum
Nitab4.5_0003973g0030 Nicotiana tabacum
Nitab4.5_0004924g0010 Nicotiana tabacum
Nitab4.5_0005556g0010 Nicotiana tabacum
Nitab4.5_0009843g0010 Nicotiana tabacum
Nn2g10660 Nelumbo nucifera
Nn2g12997 Nelumbo nucifera
Oeu005919.3 Olea europaea
Oeu022267.1 Olea europaea
Oeu026066.1 Olea europaea
Oeu029323.1 Olea europaea
Oeu029543.1 Olea europaea
Oeu038949.1 Olea europaea
Os01g0834100 Oryza sativa ssp. japonica
Os05g0122600 Oryza sativa ssp. japonica
Peaxi162Scf00005g00455 Petunia axillaris
Peaxi162Scf00389g00623 Petunia axillaris
Peaxi162Scf00472g00413 Petunia axillaris
Peaxi162Scf01604g00017 Petunia axillaris
Peaxi162Scf01604g10011 Petunia axillaris
PGR102G2478 Punica granatum
PGR142G3858 Punica granatum
PGSC0003DMG400001760 Solanum tuberosum
PGSC0003DMG400017592 Solanum tuberosum
PGSC0003DMG400025371 Solanum tuberosum
Phvul.005G137600 Phaseolus vulgaris
Phvul.007G163800 Phaseolus vulgaris
Phvul.011G072000 Phaseolus vulgaris
Potri.006G131400 Populus trichocarpa
Potri.016G085900 Populus trichocarpa
Prupe.6G092800 Prunus persica
Prupe.6G241200 Prunus persica
Psat3g044520 Pisum sativum
Psat5g277040 Pisum sativum
Psat6g070440 Pisum sativum
Psat7g222360 Pisum sativum
PSO063G3058 Papaver somniferum
PSO339G0908 Papaver somniferum
PSO339G6671 Papaver somniferum
PSO384G3662 Papaver somniferum
QL01p036663 Quercus lobata
QL07p045248 Quercus lobata
RcHm_v2.0_Chr2g0099711 Rosa chinensis
RcHm_v2.0_Chr2g0125251 Rosa chinensis
RcHm_v2.0_Chr3g0468851 Rosa chinensis
RcHm_v2.0_Chr5g0061061 Rosa chinensis
Rhsim01G0220900 Rhododendron simsii
Sabra06G0103100 Salix brachista
Sabra16G0092300 Salix brachista
SalBow3G1008 Salvia bowleyana
SalBow3G2047 Salvia bowleyana
SalBow3G2191 Salvia bowleyana
SalBow3G4214 Salvia bowleyana
SalBow4G1161 Salvia bowleyana
SalBow6G0712 Salvia bowleyana
SalBow8G4221 Salvia bowleyana
SalBow8G4979 Salvia bowleyana
Sc21g0000010 Simmondsia chinensis
Sc21g0000020 Simmondsia chinensis
Sc21g0000080 Simmondsia chinensis
Sc23g0005720 Simmondsia chinensis
Sed0003857 Sechium edule
Sed0005305 Sechium edule
Sed0007815 Sechium edule
Sed0012931 Sechium edule
Sed0016366 Sechium edule
SEGI_00111 Sequoiadendron giganteum
SGA_v2.0_scaffold287G47165 Striga asiatica
SGA_v2.0_scaffold2G00916 Striga asiatica
SGA_v2.0_scaffold97G29170 Striga asiatica
SHI12572 Sapria himalayana
SHI32809 Sapria himalayana
Solyc09g007360.3 Solanum lycopersicum
Solyc10g019030.1 Solanum lycopersicum
Solyc10g084290.2 Solanum lycopersicum
Solyc10g086030.2 Solanum lycopersicum
Solyc11g072490.2 Solanum lycopersicum
Sopen09g002260 Solanum pennellii
Sopen10g008950 Solanum pennellii
Sopen10g033740 Solanum pennellii
Sopen10g035400 Solanum pennellii
Sopen11g030140 Solanum pennellii
Sp1g13110 Schrenkiella parvula
Sp4g19400 Schrenkiella parvula
Sp5g09000 Schrenkiella parvula
Sp6g21840 Schrenkiella parvula
TAR369G0985 Trochodendron aralioides
TAR623G0803 Trochodendron aralioides
TAR633G2804 Trochodendron aralioides
TAR636G1469 Trochodendron aralioides
THA.LOC104810837 Tarenaya hassleriana
THA.LOC104823455 Tarenaya hassleriana
Thecc.05G054100 Theobroma cacao
Thecc.09G261500 Theobroma cacao
Thhalv10010619m.g Eutrema salsugineum
Thhalv10015878m.g Eutrema salsugineum
Thhalv10016431m.g Eutrema salsugineum
TPR.G11500 Trifolium pratense
TPR.G16563 Trifolium pratense
TPR.G2981 Trifolium pratense
TPR.G30249 Trifolium pratense
TPR.G36910 Trifolium pratense
TWI31G1142 Tripterygium wilfordii
TWI74G0368 Tripterygium wilfordii
TWI75G0103 Tripterygium wilfordii
TWI77G0173 Tripterygium wilfordii
TWI79G0235 Tripterygium wilfordii
unitig_27.g25063 Utricularia gibba
unitig_37.g12889 Utricularia gibba
unitig_46.g18238 Utricularia gibba
unitig_699.g19199 Utricularia gibba
unitig_744.g24673 Utricularia gibba
unitig_744.g24674 Utricularia gibba
unitig_8.g4333 Utricularia gibba
vmacro14472 Vaccinium macrocarpon
vmacro20057 Vaccinium macrocarpon
VMungo0720G2549 Vigna mungo
VMungo1080G0217 Vigna mungo
VMungo1127G0512 Vigna mungo
Zm00001eb148880 Zea mays
Zm00001eb265540 Zea mays
Zm00001eb368280 Zea mays

User provided reference genes

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