Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p22090 Brassica napus
A02p33470 Brassica napus
A06p43110 Brassica napus
A07p27640 Brassica napus
A07p43540 Brassica napus
A09p24450 Brassica napus
Aa31LG2G7120 Aethionema arabicum
Aa31LG4G8260 Aethionema arabicum
Actinidia10331 Actinidia chinensis
Actinidia29593 Actinidia chinensis
Actinidia30783 Actinidia chinensis
Actinidia31943 Actinidia chinensis
Actinidia32297 Actinidia chinensis
Ah.03g138990 Amaranthus hybridus
Ah.03g143860 Amaranthus hybridus
Ah.05g169860 Amaranthus hybridus
AL1G25690 Arabidopsis lyrata
AL2G38590 Arabidopsis lyrata
AL5G13240 Arabidopsis lyrata
Aqoxy3G03615 Aquilegia oxysepala
Aqoxy6G00760 Aquilegia oxysepala
Aqoxy6G00761 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.03382U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4V1EUD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BAH7Z0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GZ07ZQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MYU5W2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V7AA2Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VPB6CA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XA42XU Arachis hypogaea
AT1G13860 Arabidopsis thaliana
AT1G78240 Arabidopsis thaliana
AT2G03480 Arabidopsis thaliana
ATR0064G015 Amborella trichopoda
ATR0782G021 Amborella trichopoda
Atru.chr11.1654 Acer truncatum
Atru.chr13.1171 Acer truncatum
AUR62001991 Chenopodium quinoa
AUR62003114 Chenopodium quinoa
AUR62003812 Chenopodium quinoa
AUR62007929 Chenopodium quinoa
AUR62018931 Chenopodium quinoa
AUR62027775 Chenopodium quinoa
BcaB02g07159 Brassica carinata
BcaB03g15999 Brassica carinata
BcaB05g25126 Brassica carinata
BcaB07g30297 Brassica carinata
BcaB07g30668 Brassica carinata
BcaC03g15802 Brassica carinata
BcaC03g17218 Brassica carinata
BcaC04g21486 Brassica carinata
BcaC06g31179 Brassica carinata
BcaC06g33994 Brassica carinata
BcaC08g45428 Brassica carinata
BcaC08g47400 Brassica carinata
BolC2t09564H Brassica oleracea
BolC2t11234H Brassica oleracea
BolC6t38224H Brassica oleracea
BolC6t40241H Brassica oleracea
BolC7t43908H Brassica oleracea
BolC9t55981H Brassica oleracea
BraA02t07212Z Brassica rapa
BraA02t08368Z Brassica rapa
BraA07t30405Z Brassica rapa
BraA07t31866Z Brassica rapa
BraA09t38038Z Brassica rapa
C02p35480 Brassica napus
C02p51460 Brassica napus
C06p30610 Brassica napus
C06p52180 Brassica napus
C07p33940 Brassica napus
C09p31250 Brassica napus
CAN.G193.30 Capsicum annuum
CAN.G59.8 Capsicum annuum
CAN.G616.11 Capsicum annuum
CANSAT25G0640 Cannabis sativa
CANSAT64G2399 Cannabis sativa
CARHR014230 Cardamine hirsuta
CARHR071700 Cardamine hirsuta
CARHR145830 Cardamine hirsuta
Carub.0001s1356 Capsella rubella
Carub.0002s2515 Capsella rubella
Carub.0005s0244 Capsella rubella
Ca_15255_v3 Cicer arietinum L.
Ca_18804_v3 Cicer arietinum L.
Ca_19083_v3 Cicer arietinum L.
Cc10_g07070 Coffea canephora
Cc11_g12140 Coffea canephora
CDE02G3290 Ceratophyllum demersum
CDE05G1039 Ceratophyllum demersum
CDE10G1026 Ceratophyllum demersum
CDE10G1135 Ceratophyllum demersum
Cfa008887 Carpinus fangiana
Cfa013648 Carpinus fangiana
Ciclev10000463m.g Citrus clementina
Ciclev10031472m.g Citrus clementina
CiPaw.05G126200 Carya illinoinensis
CiPaw.06G091800 Carya illinoinensis
CiPaw.07G178700 Carya illinoinensis
CiPaw.08G046200 Carya illinoinensis
ClCG05G023770 Citrullus lanatus
ClCG08G010330 Citrullus lanatus
ClCG11G014160 Citrullus lanatus
COL.COLO4_12049 Corchorus olitorius
COL.COLO4_27902 Corchorus olitorius
Cpa.g.sc1.113 Carica papaya
Cpa.g.sc36.145 Carica papaya
Cpa.g.sc36.146 Carica papaya
CsaV3_3G047550 Cucumis sativus L.
CsaV3_5G033230 Cucumis sativus L.
CsaV3_5G033240 Cucumis sativus L.
CSS0009307 Camellia sinensis var. sinensis
CSS0033705 Camellia sinensis var. sinensis
CSS0038092 Camellia sinensis var. sinensis
CSS0040506 Camellia sinensis var. sinensis
DCAR_012897 Daucus carota
DCAR_019221 Daucus carota
DCAR_027463 Daucus carota
DCAR_030036 Daucus carota
Dinv08838 Davidia involucrata
Dinv14340 Davidia involucrata
Dinv16721 Davidia involucrata
Dinv16722 Davidia involucrata
Dinv34080 Davidia involucrata
Dinv34081 Davidia involucrata
Dinv44785 Davidia involucrata
Duzib041G0020 Durio zibethinus
Duzib093G1057 Durio zibethinus
Duzib116G0389 Durio zibethinus
Duzib248G0240 Durio zibethinus
Duzib251G0071 Durio zibethinus
Duzib268G0696 Durio zibethinus
ECA232G3785 Erigeron canadensis
ECA233G3539 Erigeron canadensis
ECA234G0867 Erigeron canadensis
ECA246G2915 Erigeron canadensis
ECA246G5113 Erigeron canadensis
EL10Ac1g01202 Beta vulgaris
EL10Ac6g14987 Beta vulgaris
EL10Ac6g15128 Beta vulgaris
Eucgr.F00334 Eucalyptus grandis
Eucgr.G02456 Eucalyptus grandis
FAN04G2550 Fragaria x ananassa
FAN07G1642 Fragaria x ananassa
FAN08G1287 Fragaria x ananassa
FAN12G0648 Fragaria x ananassa
FAN13G1972 Fragaria x ananassa
FAN17G0514 Fragaria x ananassa
FAN18G2111 Fragaria x ananassa
FAN22G1236 Fragaria x ananassa
FvH4_4g30250 Fragaria vesca
FvH4_5g37070 Fragaria vesca
Glyma.01G057500 Glycine max
Glyma.02G115600 Glycine max
Glyma.04G100700 Glycine max
Glyma.06G102500 Glycine max
Glyma.07G226100 Glycine max
Glyma.13G089700 Glycine max
Glyma.14G174500 Glycine max
Glyma.20G026000 Glycine max
Gohir.A03G104300 Gossypium hirsutum
Gohir.A05G225500 Gossypium hirsutum
Gohir.A05G266700 Gossypium hirsutum
Gohir.A06G035200 Gossypium hirsutum
Gohir.A12G161800 Gossypium hirsutum
Gohir.A13G081766 Gossypium hirsutum
Gohir.D02G129200 Gossypium hirsutum
Gohir.D05G228200 Gossypium hirsutum
Gohir.D05G268300 Gossypium hirsutum
Gohir.D06G035800 Gossypium hirsutum
Gohir.D12G165100 Gossypium hirsutum
Gohir.D13G081400 Gossypium hirsutum
Gorai.005G145000 Gossypium raimondii
Gorai.008G177800 Gossypium raimondii
Gorai.009G236100 Gossypium raimondii
Gorai.009G280800 Gossypium raimondii
Gorai.010G039800 Gossypium raimondii
Gorai.013G093300 Gossypium raimondii
GSVIVG01009043001 Vitis vinifera
GSVIVG01012188001 Vitis vinifera
GSVIVG01012189001 Vitis vinifera
HanXRQChr05g0145411 Helianthus annuus
HanXRQChr05g0163061 Helianthus annuus
HanXRQChr08g0211851 Helianthus annuus
HanXRQChr09g0271911 Helianthus annuus
HanXRQChr11g0324771 Helianthus annuus
HanXRQChr12g0363021 Helianthus annuus
HanXRQChr12g0363031 Helianthus annuus
HanXRQChr12g0375321 Helianthus annuus
HanXRQChr15g0490011 Helianthus annuus
Haze_11920 Corylus avellana
Haze_22285 Corylus avellana
Hma1.2p1_0357F.1_g134620 Hydrangea macrophylla
HPP92_004095 Vanilla planifolia
HPP92_013105 Vanilla planifolia
HPP92_016784 Vanilla planifolia
Hund05843 Selenicereus undatus
Hund13614 Selenicereus undatus
Hund16898 Selenicereus undatus
Lalb_Chr05g0219981 Lupinus albus
Lalb_Chr08g0242111 Lupinus albus
Lalb_Chr09g0329011 Lupinus albus
Lalb_Chr10g0097431 Lupinus albus
Lalb_Chr10g0102431 Lupinus albus
Lalb_Chr16g0385531 Lupinus albus
Lalb_Chr17g0344181 Lupinus albus
Lalb_Chr23g0270531 Lupinus albus
Lj1g0010851 Lotus japonicus
Lj1g0021091 Lotus japonicus
Lj2g0019091 Lotus japonicus
Lj3C1030T21 Lonicera japonica
Lj4C101T8 Lonicera japonica
Lj4C725T7 Lonicera japonica
Lj4g0023116 Lotus japonicus
Lj6A780G49 Lonicera japonica
Lsat_1_v5_gn_3_56021 Lactuca sativa
Lsat_1_v5_gn_4_12401 Lactuca sativa
Lsat_1_v5_gn_6_103341 Lactuca sativa
Lsat_1_v5_gn_8_47881 Lactuca sativa
Lsat_1_v5_gn_9_41781 Lactuca sativa
Manes.01G028700 Manihot esculenta
Manes.02G151700 Manihot esculenta
Manes.05G108800 Manihot esculenta
Manes.18G066200 Manihot esculenta
Mapoly0146s0035 Marchantia polymorpha
MBI02_g35743_MAGBIO Magnolia biondii
MBI05_g02441_MAGBIO Magnolia biondii
MBI11_g31287_MAGBIO Magnolia biondii
MBI16_g10278_MAGBIO Magnolia biondii
MBI16_g22865_MAGBIO Magnolia biondii
MD00G1010000 Malus domestica
MD08G1184700 Malus domestica
MD13G1063700 Malus domestica
MD16G1062200 Malus domestica
MD16G1062400 Malus domestica
Medtr3g074780 Medicago truncatula
Medtr4g083030 Medicago truncatula
Medtr5g064080 Medicago truncatula
MELO3C003569.2 Cucumis melo
MELO3C012145.2 Cucumis melo
Migut.L01200 Erythranthe guttata
Migut.N02890 Erythranthe guttata
MSTRG.13446 Avicennia marina
MSTRG.22160 Avicennia marina
MSTRG.24450 Avicennia marina
MSTRG.746 Avicennia marina
Nitab4.5_0000014g0330 Nicotiana tabacum
Nitab4.5_0000232g0040 Nicotiana tabacum
Nitab4.5_0000836g0120 Nicotiana tabacum
Nitab4.5_0002052g0120 Nicotiana tabacum
Nitab4.5_0002052g0130 Nicotiana tabacum
Nitab4.5_0002082g0030 Nicotiana tabacum
Nitab4.5_0006725g0020 Nicotiana tabacum
Nitab4.5_0007066g0030 Nicotiana tabacum
Nitab4.5_0007438g0050 Nicotiana tabacum
Nn1g05387 Nelumbo nucifera
Nn4g23406 Nelumbo nucifera
Nn5g30076 Nelumbo nucifera
Oeu004577.1 Olea europaea
Oeu005122.1 Olea europaea
Oeu025275.1 Olea europaea
Oeu033521.1 Olea europaea
Oeu046307.1 Olea europaea
Oeu048148.1 Olea europaea
Os02g0755000 Oryza sativa ssp. japonica
Peaxi162Scf00026g01922 Petunia axillaris
Peaxi162Scf00030g00611 Petunia axillaris
Peaxi162Scf00314g00231 Petunia axillaris
Peaxi162Scf00930g00029 Petunia axillaris
PGR042G0726 Punica granatum
PGR119G1431 Punica granatum
PGSC0003DMG400001213 Solanum tuberosum
PGSC0003DMG400002844 Solanum tuberosum
PGSC0003DMG400028378 Solanum tuberosum
PGSC0003DMG400031473 Solanum tuberosum
Phvul.002G102600 Phaseolus vulgaris
Phvul.003G043400 Phaseolus vulgaris
Phvul.008G174000 Phaseolus vulgaris
Phvul.009G031900 Phaseolus vulgaris
Potri.002G098000 Populus trichocarpa
Potri.005G163900 Populus trichocarpa
Potri.008G094800 Populus trichocarpa
Potri.010G159400 Populus trichocarpa
Prupe.1G284100 Prunus persica
Prupe.1G285100 Prunus persica
Prupe.1G518800 Prunus persica
Psat2g075040 Pisum sativum
Psat5g139640 Pisum sativum
Psat7g133520 Pisum sativum
PSO017G0071 Papaver somniferum
PSO210G6967 Papaver somniferum
PSO447G0002 Papaver somniferum
PSO478G1303 Papaver somniferum
PSO541G4145 Papaver somniferum
PSO781G0055 Papaver somniferum
QL03p071336 Quercus lobata
QL06p004913 Quercus lobata
QL12p037012 Quercus lobata
RcHm_v2.0_Chr4g0438551 Rosa chinensis
RcHm_v2.0_Chr7g0238621 Rosa chinensis
RcHm_v2.0_Chr7g0243891 Rosa chinensis
Rhsim06G0080700 Rhododendron simsii
Rhsim12G0076100 Rhododendron simsii
Sabra02G0077000 Salix brachista
Sabra05G0123500 Salix brachista
Sabra08G0071300 Salix brachista
Sabra10G0121100 Salix brachista
SalBow2G0256 Salvia bowleyana
SalBow2G1938 Salvia bowleyana
SalBow7G0947 Salvia bowleyana
Sc01g0000510 Simmondsia chinensis
Sc11g0002380 Simmondsia chinensis
Sc14g0007990 Simmondsia chinensis
Sc26g0000120 Simmondsia chinensis
Sed0012981 Sechium edule
Sed0014400 Sechium edule
Sed0019559 Sechium edule
Sed0023909 Sechium edule
Sed0025961 Sechium edule
SEGI_06014 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07770 Striga asiatica
SGA_v2.0_scaffold28G11915 Striga asiatica
SGA_v2.0_scaffold36G14449 Striga asiatica
SGA_v2.0_scaffold84G26516 Striga asiatica
SHI23694 Sapria himalayana
SHI34090 Sapria himalayana
SMO334G0038 Selaginella moellendorffii
Solyc01g010370.3 Solanum lycopersicum
Solyc04g005430.4 Solanum lycopersicum
Solyc04g074290.3 Solanum lycopersicum
Sopen01g005970 Solanum pennellii
Sopen04g001430 Solanum pennellii
Sopen04g029420 Solanum pennellii
Sopen05g007270 Solanum pennellii
Sp1g12100 Schrenkiella parvula
Sp2g14390 Schrenkiella parvula
Sp5g33380 Schrenkiella parvula
SpUn0091_0030 Schrenkiella parvula
TAR381G0664 Trochodendron aralioides
TAR625G0564 Trochodendron aralioides
TAR628G1040 Trochodendron aralioides
TAR629G0811 Trochodendron aralioides
TAR629G3094 Trochodendron aralioides
THA.LOC104800149 Tarenaya hassleriana
THA.LOC104805190 Tarenaya hassleriana
THA.LOC104810748 Tarenaya hassleriana
Thecc.02G333000 Theobroma cacao
Thecc.08G105200 Theobroma cacao
Thhalv10003873m.g Eutrema salsugineum
Thhalv10018220m.g Eutrema salsugineum
TPR.G14910 Trifolium pratense
TPR.G26158 Trifolium pratense
TPR.G34074 Trifolium pratense
TWI12G1467 Tripterygium wilfordii
TWI31G0885 Tripterygium wilfordii
TWI36G0736 Tripterygium wilfordii
TWI56G1448 Tripterygium wilfordii
TWI79G1468 Tripterygium wilfordii
unitig_22.g6495 Utricularia gibba
unitig_578.g16196 Utricularia gibba
unitig_8.g3186 Utricularia gibba
unitig_8.g3606 Utricularia gibba
vmacro01323 Vaccinium macrocarpon
vmacro21261 Vaccinium macrocarpon
VMungo0251G1737 Vigna mungo
VMungo0647G0258 Vigna mungo
VMungo0647G0264 Vigna mungo
VMungo1215G0520 Vigna mungo
VMungo1309G2810 Vigna mungo
Zm00001eb194110 Zea mays
Zm00001eb254690 Zea mays
Zm00001eb254700 Zea mays
Zm00001eb254820 Zea mays
Zm00001eb254830 Zea mays
Zm00001eb255340 Zea mays

User provided reference genes

Program Settings