Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p04520 Brassica napus
A05p06800 Brassica napus
A07p22480 Brassica napus
A09p48350 Brassica napus
A09p48370 Brassica napus
Aa31LG10G10460 Aethionema arabicum
Aa31LG4G15570 Aethionema arabicum
Actinidia02947 Actinidia chinensis
Actinidia06135 Actinidia chinensis
Actinidia13879 Actinidia chinensis
Actinidia18662 Actinidia chinensis
Actinidia29227 Actinidia chinensis
Actinidia34406 Actinidia chinensis
Ah.07g205330 Amaranthus hybridus
Ah.08g219510 Amaranthus hybridus
Ah.09g228210 Amaranthus hybridus
AL1G38190 Arabidopsis lyrata
AL4G37050 Arabidopsis lyrata
AL5G25440 Arabidopsis lyrata
AL5G36580 Arabidopsis lyrata
AL6G35830 Arabidopsis lyrata
Aqoxy2G02128 Aquilegia oxysepala
Aqoxy4G02930 Aquilegia oxysepala
Aqoxy5G04300 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5V2Y5E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8MYR7G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B1CADF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F14XJW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GX5JDN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JA1EPG Arachis hypogaea
AT2G39640 Arabidopsis thaliana
AT3G46570 Arabidopsis thaliana
AT3G55430 Arabidopsis thaliana
AT5G24318 Arabidopsis thaliana
ATR0559G111 Amborella trichopoda
ATR0559G226 Amborella trichopoda
ATR0680G133 Amborella trichopoda
Atru.chr12.2261 Acer truncatum
Atru.chr12.451 Acer truncatum
Atru.chr12.473 Acer truncatum
Atru.chr3.3910 Acer truncatum
AUR62001784 Chenopodium quinoa
AUR62009572 Chenopodium quinoa
AUR62012084 Chenopodium quinoa
AUR62039380 Chenopodium quinoa
BcaB01g00101 Brassica carinata
BcaB02g07690 Brassica carinata
BcaB02g08422 Brassica carinata
BcaB02g09100 Brassica carinata
BcaB04g19829 Brassica carinata
BcaC02g09756 Brassica carinata
BcaC02g12091 Brassica carinata
BcaC04g23537 Brassica carinata
BcaC07g39860 Brassica carinata
BcaC07g39861 Brassica carinata
BcaC08g44734 Brassica carinata
BolC4t22414H Brassica oleracea
BolC4t25260H Brassica oleracea
BolC8t50681H Brassica oleracea
BolC8t50683H Brassica oleracea
BolC9t53640H Brassica oleracea
BraA04t16162Z Brassica rapa
BraA05t19646Z Brassica rapa
BraA07t29924Z Brassica rapa
BraA09t36297Z Brassica rapa
BraA09t40287Z Brassica rapa
BraA09t40289Z Brassica rapa
C04p07970 Brassica napus
C04p36950 Brassica napus
C06p22680 Brassica napus
C08p30640 Brassica napus
C08p30660 Brassica napus
C09p07280 Brassica napus
CAN.G1013.27 Capsicum annuum
CAN.G1116.8 Capsicum annuum
CAN.G394.59 Capsicum annuum
CAN.G481.38 Capsicum annuum
CANSAT21G0054 Cannabis sativa
CANSAT54G2925 Cannabis sativa
CANSAT56G2028 Cannabis sativa
CARHR165450 Cardamine hirsuta
CARHR189140 Cardamine hirsuta
Carub.0004s2168 Capsella rubella
Carub.0005s1284 Capsella rubella
Carub.0005s2215 Capsella rubella
Carub.0006s2213 Capsella rubella
Ca_18774_v3 Cicer arietinum L.
Ca_26372_v3 Cicer arietinum L.
Cc00_g27990 Coffea canephora
Cc02_g01270 Coffea canephora
Cc02_g07840 Coffea canephora
CDE04G3022 Ceratophyllum demersum
CDE05G2541 Ceratophyllum demersum
CDE07G1380 Ceratophyllum demersum
CDE07G1430 Ceratophyllum demersum
CDE08G0121 Ceratophyllum demersum
Cfa001473 Carpinus fangiana
Cfa011506 Carpinus fangiana
Ciclev10020075m.g Citrus clementina
Ciclev10028241m.g Citrus clementina
Ciclev10033472m.g Citrus clementina
CiPaw.01G287500 Carya illinoinensis
CiPaw.02G184000 Carya illinoinensis
CiPaw.05G198900 Carya illinoinensis
CiPaw.13G094100 Carya illinoinensis
ClCG00G003450 Citrullus lanatus
ClCG00G005070 Citrullus lanatus
ClCG01G000310 Citrullus lanatus
ClCG03G001480 Citrullus lanatus
ClCG07G003260 Citrullus lanatus
COL.COLO4_15042 Corchorus olitorius
COL.COLO4_15043 Corchorus olitorius
COL.COLO4_16801 Corchorus olitorius
COL.COLO4_18511 Corchorus olitorius
Cpa.g.sc1.407 Carica papaya
Cpa.g.sc3.108 Carica papaya
Cpa.g.sc81.143 Carica papaya
CsaV3_1G034270 Cucumis sativus L.
CsaV3_5G000260 Cucumis sativus L.
CsaV3_5G008010 Cucumis sativus L.
CSS0016140 Camellia sinensis var. sinensis
CSS0028102 Camellia sinensis var. sinensis
CSS0037058 Camellia sinensis var. sinensis
DCAR_010587 Daucus carota
DCAR_011696 Daucus carota
DCAR_011697 Daucus carota
Dinv03046 Davidia involucrata
Dinv17006 Davidia involucrata
Dinv26016 Davidia involucrata
Dinv29255 Davidia involucrata
Dinv35351 Davidia involucrata
Dinv42955 Davidia involucrata
Dinv43144 Davidia involucrata
Duzib114G1016 Durio zibethinus
Duzib168G0128 Durio zibethinus
Duzib168G1991 Durio zibethinus
Duzib187G1182 Durio zibethinus
Duzib205G1328 Durio zibethinus
ECA232G0054 Erigeron canadensis
ECA232G1358 Erigeron canadensis
ECA233G5264 Erigeron canadensis
ECA238G1312 Erigeron canadensis
EL10Ac2g04751 Beta vulgaris
EL10Ac3g05249 Beta vulgaris
EL10Ac7g16020 Beta vulgaris
Eucgr.A01445 Eucalyptus grandis
Eucgr.B02364 Eucalyptus grandis
Eucgr.B02365 Eucalyptus grandis
Eucgr.B02367 Eucalyptus grandis
Eucgr.J00013 Eucalyptus grandis
FAN01G0051 Fragaria x ananassa
FAN01G1683 Fragaria x ananassa
FAN01G1868 Fragaria x ananassa
FAN03G3085 Fragaria x ananassa
FAN06G1324 Fragaria x ananassa
FAN06G1807 Fragaria x ananassa
FAN06G2674 Fragaria x ananassa
FAN06G3225 Fragaria x ananassa
FAN06G3771 Fragaria x ananassa
FAN10G1595 Fragaria x ananassa
FAN10G1844 Fragaria x ananassa
FAN10G3369 Fragaria x ananassa
FAN10G3634 Fragaria x ananassa
FAN10G3916 Fragaria x ananassa
FAN11G1408 Fragaria x ananassa
FAN16G2190 Fragaria x ananassa
FAN21G2814 Fragaria x ananassa
FAN25G3248 Fragaria x ananassa
FvH4_3g36150 Fragaria vesca
FvH4_7g22480 Fragaria vesca
FvH4_7g22494 Fragaria vesca
FvH4_7g32100 Fragaria vesca
Glyma.06G072800 Glycine max
Glyma.18G291500 Glycine max
Gohir.1Z049545 Gossypium hirsutum
Gohir.A03G049125 Gossypium hirsutum
Gohir.A05G009700 Gossypium hirsutum
Gohir.A08G094424 Gossypium hirsutum
Gohir.A09G185400 Gossypium hirsutum
Gohir.A10G218900 Gossypium hirsutum
Gohir.A10G219000 Gossypium hirsutum
Gohir.A13G227400 Gossypium hirsutum
Gohir.D03G115700 Gossypium hirsutum
Gohir.D05G010400 Gossypium hirsutum
Gohir.D08G104700 Gossypium hirsutum
Gohir.D09G180300 Gossypium hirsutum
Gohir.D10G228500 Gossypium hirsutum
Gohir.D13G233000 Gossypium hirsutum
Gorai.003G121900 Gossypium raimondii
Gorai.004G111800 Gossypium raimondii
Gorai.006G202300 Gossypium raimondii
Gorai.009G010800 Gossypium raimondii
Gorai.011G261000 Gossypium raimondii
Gorai.013G263800 Gossypium raimondii
GSVIVG01016553001 Vitis vinifera
GSVIVG01024956001 Vitis vinifera
GSVIVG01038583001 Vitis vinifera
HanXRQChr02g0049201 Helianthus annuus
HanXRQChr08g0220731 Helianthus annuus
HanXRQChr08g0225141 Helianthus annuus
HanXRQChr09g0249381 Helianthus annuus
HanXRQChr14g0457971 Helianthus annuus
Haze_00238 Corylus avellana
Haze_17067 Corylus avellana
Haze_24098 Corylus avellana
Hma1.2p1_0035F.1_g022430 Hydrangea macrophylla
Hma1.2p1_0591F.1_g185180 Hydrangea macrophylla
Hma1.2p1_1542F.1_g289720 Hydrangea macrophylla
HPP92_019186 Vanilla planifolia
HPP92_028580 Vanilla planifolia
Hund13762 Selenicereus undatus
Lalb_Chr10g0091631 Lupinus albus
Lalb_Chr16g0385311 Lupinus albus
Lj1A1022T50 Lonicera japonica
Lj1A937G95 Lonicera japonica
Lj1C153T7 Lonicera japonica
Lj1C153T8 Lonicera japonica
Lj1C937T12 Lonicera japonica
Lj1C937T14 Lonicera japonica
Lj1g0005595 Lotus japonicus
Lj4g0017811 Lotus japonicus
Lj8C84G7 Lonicera japonica
Lsat_1_v5_gn_2_119141 Lactuca sativa
Lsat_1_v5_gn_8_15560 Lactuca sativa
Lsat_1_v5_gn_8_5441 Lactuca sativa
Lsat_1_v5_gn_9_65581 Lactuca sativa
Lsat_1_v5_gn_9_65621 Lactuca sativa
Manes.01G040000 Manihot esculenta
Manes.01G173700 Manihot esculenta
Manes.05G192000 Manihot esculenta
Manes.07G116500 Manihot esculenta
Manes.10G030200 Manihot esculenta
MBI14_g36921_MAGBIO Magnolia biondii
MBI14_g47391_MAGBIO Magnolia biondii
MBI18_g16985_MAGBIO Magnolia biondii
MD01G1134200 Malus domestica
MD07G1198400 Malus domestica
MD07G1198600 Malus domestica
MD07G1198700 Malus domestica
MD07G1294400 Malus domestica
MD11G1107600 Malus domestica
Medtr1g007810 Medicago truncatula
Medtr4g083500 Medicago truncatula
Medtr7g026340 Medicago truncatula
MELO3C005906.2 Cucumis melo
MELO3C020630.2 Cucumis melo
MELO3C023847.2 Cucumis melo
Migut.F00796 Erythranthe guttata
Migut.F01493 Erythranthe guttata
MSTRG.11578 Avicennia marina
MSTRG.289 Avicennia marina
MSTRG.294 Avicennia marina
MSTRG.8526 Avicennia marina
Nitab4.5_0000793g0050 Nicotiana tabacum
Nitab4.5_0001097g0020 Nicotiana tabacum
Nitab4.5_0001170g0190 Nicotiana tabacum
Nitab4.5_0003676g0080 Nicotiana tabacum
Nitab4.5_0004156g0020 Nicotiana tabacum
Nitab4.5_0007100g0050 Nicotiana tabacum
Nitab4.5_0008565g0010 Nicotiana tabacum
Nitab4.5_0014303g0010 Nicotiana tabacum
Nn1g00320 Nelumbo nucifera
Nn2g11104 Nelumbo nucifera
Nn2g13342 Nelumbo nucifera
Oeu005354.1 Olea europaea
Oeu007498.1 Olea europaea
Oeu048245.1 Olea europaea
Oeu064378.1 Olea europaea
Os04g0681950 Oryza sativa ssp. japonica
Os07g0240200 Oryza sativa ssp. japonica
Os11g0704600 Oryza sativa ssp. japonica
Peaxi162Scf00698g00018 Petunia axillaris
Peaxi162Scf00740g00244 Petunia axillaris
Peaxi162Scf00774g00016 Petunia axillaris
Peaxi162Scf00886g00018 Petunia axillaris
PGR042G0480 Punica granatum
PGR044G1050 Punica granatum
PGR044G1700 Punica granatum
PGSC0003DMG400003181 Solanum tuberosum
PGSC0003DMG400018523 Solanum tuberosum
PGSC0003DMG400030414 Solanum tuberosum
PGSC0003DMG401023533 Solanum tuberosum
Phvul.002G099500 Phaseolus vulgaris
Phvul.008G010600 Phaseolus vulgaris
Phvul.009G097400 Phaseolus vulgaris
Potri.001G240000 Populus trichocarpa
Potri.008G055900 Populus trichocarpa
Potri.008G056000 Populus trichocarpa
Potri.010G203800 Populus trichocarpa
Potri.012G017800 Populus trichocarpa
Potri.015G010100 Populus trichocarpa
Prupe.2G235400 Prunus persica
Prupe.2G314200 Prunus persica
Prupe.6G076900 Prunus persica
Psat3g165080 Pisum sativum
Psat6g035080 Pisum sativum
Psat7g131960 Pisum sativum
PSO063G3116 Papaver somniferum
PSO151G0059 Papaver somniferum
PSO339G3575 Papaver somniferum
PSO339G6025 Papaver somniferum
QL01p031894 Quercus lobata
QL08p042423 Quercus lobata
QL08p059782 Quercus lobata
QL09p007876 Quercus lobata
RcHm_v2.0_Chr1g0367091 Rosa chinensis
RcHm_v2.0_Chr1g0367121 Rosa chinensis
RcHm_v2.0_Chr1g0381691 Rosa chinensis
RcHm_v2.0_Chr5g0064591 Rosa chinensis
RcHm_v2.0_Chr5g0064901 Rosa chinensis
Rhsim01G0227700 Rhododendron simsii
Rhsim09G0165900 Rhododendron simsii
Rhsim09G0166000 Rhododendron simsii
Rhsim09G0206800 Rhododendron simsii
Sabra08G0040600 Salix brachista
Sabra08G0040700 Salix brachista
Sabra10G0157400 Salix brachista
Sabra15G0008100 Salix brachista
Sabra16G0144800 Salix brachista
SalBow2G2938 Salvia bowleyana
SalBow3G0712 Salvia bowleyana
SalBow3G3092 Salvia bowleyana
SalBow6G4318 Salvia bowleyana
Sc10g0001560 Simmondsia chinensis
Sc19g0000790 Simmondsia chinensis
Sc21g0005790 Simmondsia chinensis
Sed0007222 Sechium edule
Sed0011734 Sechium edule
Sed0023995 Sechium edule
Sed0024246 Sechium edule
SEGI_09182 Sequoiadendron giganteum
SEGI_11977 Sequoiadendron giganteum
SEGI_28112 Sequoiadendron giganteum
SGA_v2.0_scaffold221G42665 Striga asiatica
SGA_v2.0_scaffold388G50544 Striga asiatica
SHI05943 Sapria himalayana
Solyc03g082900.3 Solanum lycopersicum
Solyc05g054440.4 Solanum lycopersicum
Solyc06g076170.4 Solanum lycopersicum
Solyc07g005330.3 Solanum lycopersicum
Sopen03g022720 Solanum pennellii
Sopen05g032930 Solanum pennellii
Sopen06g032570 Solanum pennellii
Sopen07g001460 Solanum pennellii
Sp2g23010 Schrenkiella parvula
Sp4g21900 Schrenkiella parvula
Sp5g07040 Schrenkiella parvula
TAR369G0552 Trochodendron aralioides
TAR629G1082 Trochodendron aralioides
TAR633G1169 Trochodendron aralioides
THA.LOC104798906 Tarenaya hassleriana
THA.LOC104810029 Tarenaya hassleriana
THA.LOC104810780 Tarenaya hassleriana
Thecc.03G202200 Theobroma cacao
Thecc.09G147700 Theobroma cacao
Thecc.09G321200 Theobroma cacao
Thecc.10G042300 Theobroma cacao
Thhalv10002844m.g Eutrema salsugineum
Thhalv10004182m.g Eutrema salsugineum
Thhalv10010363m.g Eutrema salsugineum
Thhalv10017897m.g Eutrema salsugineum
TPR.G24530 Trifolium pratense
TPR.G8554 Trifolium pratense
TWI23G1328 Tripterygium wilfordii
TWI63G0599 Tripterygium wilfordii
TWI79G1008 Tripterygium wilfordii
unitig_22.g6686 Utricularia gibba
unitig_22.g6687 Utricularia gibba
unitig_37.g12459 Utricularia gibba
unitig_62.g23847 Utricularia gibba
vmacro07171 Vaccinium macrocarpon
vmacro10133 Vaccinium macrocarpon
vmacro10232 Vaccinium macrocarpon
vmacro10233 Vaccinium macrocarpon
vmacro14516 Vaccinium macrocarpon
VMungo0251G0039 Vigna mungo
VMungo1309G2418 Vigna mungo
VMungo1383G0145 Vigna mungo
Zm00001eb065810 Zea mays
Zm00001eb091470 Zea mays
Zm00001eb303980 Zea mays

User provided reference genes

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