Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p36060 Brassica napus
A03p36070 Brassica napus
A04p05870 Brassica napus
A06p47820 Brassica napus
A09p20510 Brassica napus
A09p46810 Brassica napus
Aa31LG5G3640 Aethionema arabicum
Actinidia04458 Actinidia chinensis
Actinidia34428 Actinidia chinensis
Actinidia39885 Actinidia chinensis
Ah.02g111770 Amaranthus hybridus
Ah.09g225690 Amaranthus hybridus
Ah.13g065730 Amaranthus hybridus
Ah.14g080710 Amaranthus hybridus
AL3G20420 Arabidopsis lyrata
AL5G34810 Arabidopsis lyrata
AL70U10010 Arabidopsis lyrata
AL8G16750 Arabidopsis lyrata
Aqoxy1G00860 Aquilegia oxysepala
Aqoxy2G02336 Aquilegia oxysepala
Aqoxy2G03606 Aquilegia oxysepala
Aqoxy5G00282 Aquilegia oxysepala
AT3G09290 Arabidopsis thaliana
AT3G53820 Arabidopsis thaliana
AT5G43540 Arabidopsis thaliana
ATR0559G269 Amborella trichopoda
ATR0680G300 Amborella trichopoda
Atru.chr3.3996 Acer truncatum
Atru.chr4.2152 Acer truncatum
Atru.chr5.1637 Acer truncatum
Atru.chr8.2034 Acer truncatum
AUR62041019 Chenopodium quinoa
AUR62044495 Chenopodium quinoa
AUR62044706 Chenopodium quinoa
BcaB01g00234 Brassica carinata
BcaB02g08506 Brassica carinata
BcaB04g18534 Brassica carinata
BcaB07g31005 Brassica carinata
BcaC01g04224 Brassica carinata
BcaC01g04226 Brassica carinata
BcaC02g09129 Brassica carinata
BcaC04g21908 Brassica carinata
BcaC06g31692 Brassica carinata
BcaC06g34645 Brassica carinata
BcaC07g39739 Brassica carinata
BcaC09g48016 Brassica carinata
BcaC09g48068 Brassica carinata
BcaC09g48069 Brassica carinata
BolC1t05462H Brassica oleracea
BolC3t16640H Brassica oleracea
BolC4t25449H Brassica oleracea
BolC7t43144H Brassica oleracea
BolC8t50513H Brassica oleracea
BolC9t55497H Brassica oleracea
BraA01t04305Z Brassica rapa
BraA03t12777Z Brassica rapa
BraA04t16284Z Brassica rapa
BraA06t27652Z Brassica rapa
BraA09t37657Z Brassica rapa
BraA09t40142Z Brassica rapa
C03p43700 Brassica napus
C04p38760 Brassica napus
C07p26170 Brassica napus
C08p29130 Brassica napus
C09p25920 Brassica napus
CAN.G1125.7 Capsicum annuum
CAN.G229.24 Capsicum annuum
CAN.G92.29 Capsicum annuum
CANSAT01G2849 Cannabis sativa
CANSAT35G0435 Cannabis sativa
CANSAT78G0432 Cannabis sativa
CARHR083650 Cardamine hirsuta
CARHR163750 Cardamine hirsuta
CARHR180090 Cardamine hirsuta
Carub.0003s0840 Capsella rubella
Carub.0005s2041 Capsella rubella
Carub.0008s0508 Capsella rubella
CDE05G3671 Ceratophyllum demersum
Cfa002393 Carpinus fangiana
Cfa011558 Carpinus fangiana
Cfa017336 Carpinus fangiana
Ciclev10006751m.g Citrus clementina
Ciclev10013650m.g Citrus clementina
Ciclev10022375m.g Citrus clementina
Ciclev10030209m.g Citrus clementina
CiPaw.01G188500 Carya illinoinensis
CiPaw.02G115400 Carya illinoinensis
CiPaw.03G261100 Carya illinoinensis
CiPaw.04G184500 Carya illinoinensis
CiPaw.09G197400 Carya illinoinensis
CiPaw.13G088900 Carya illinoinensis
CiPaw.14G065000 Carya illinoinensis
ClCG03G001270 Citrullus lanatus
ClCG06G006790 Citrullus lanatus
ClCG07G000870 Citrullus lanatus
COL.COLO4_05593 Corchorus olitorius
COL.COLO4_14749 Corchorus olitorius
COL.COLO4_15819 Corchorus olitorius
COL.COLO4_18580 Corchorus olitorius
Cpa.g.sc44.98 Carica papaya
Cpa.g.sc50.49 Carica papaya
CsaV3_1G034550 Cucumis sativus L.
CsaV3_2G012980 Cucumis sativus L.
CsaV3_2G012990 Cucumis sativus L.
CsaV3_3G012400 Cucumis sativus L.
CsaV3_3G023340 Cucumis sativus L.
CSS0048835 Camellia sinensis var. sinensis
DCAR_005939 Daucus carota
DCAR_007336 Daucus carota
DCAR_007428 Daucus carota
DCAR_012117 Daucus carota
DCAR_018466 Daucus carota
DCAR_027289 Daucus carota
DCAR_030731 Daucus carota
Dinv22447 Davidia involucrata
Dinv29892 Davidia involucrata
Dinv34291 Davidia involucrata
Dinv34594 Davidia involucrata
Dinv44652 Davidia involucrata
Duzib052G0881 Durio zibethinus
Duzib093G1081 Durio zibethinus
Duzib128G0212 Durio zibethinus
Duzib133G0989 Durio zibethinus
Duzib138G0610 Durio zibethinus
Duzib150G0733 Durio zibethinus
Duzib151G0499 Durio zibethinus
Duzib168G1458 Durio zibethinus
Duzib211G0426 Durio zibethinus
Duzib211G0619 Durio zibethinus
Duzib212G0130 Durio zibethinus
ECA236G0826 Erigeron canadensis
ECA236G4053 Erigeron canadensis
ECA240G0381 Erigeron canadensis
ECA247G0522 Erigeron canadensis
ECA248G2572 Erigeron canadensis
EL10Ac3g05840 Beta vulgaris
EL10Ac3g05906 Beta vulgaris
Eucgr.B01519 Eucalyptus grandis
Eucgr.B02305 Eucalyptus grandis
Eucgr.H00184 Eucalyptus grandis
FAN05G4289 Fragaria x ananassa
FAN09G1868 Fragaria x ananassa
FAN09G2384 Fragaria x ananassa
FAN11G1011 Fragaria x ananassa
FAN12G2187 Fragaria x ananassa
FAN14G2380 Fragaria x ananassa
FAN15G1533 Fragaria x ananassa
FAN16G1557 Fragaria x ananassa
FAN17G2051 Fragaria x ananassa
FAN20G2435 Fragaria x ananassa
FAN21G2827 Fragaria x ananassa
FAN22G0281 Fragaria x ananassa
FAN24G1742 Fragaria x ananassa
FAN25G2050 Fragaria x ananassa
FAN27G3043 Fragaria x ananassa
FvH4_2g22030 Fragaria vesca
FvH4_3g36951 Fragaria vesca
FvH4_4g03020 Fragaria vesca
FvH4_6g13150 Fragaria vesca
Glyma.03G160900 Glycine max
Glyma.07G135800 Glycine max
Glyma.10G034700 Glycine max
Glyma.10G184500 Glycine max
Glyma.11G135800 Glycine max
Glyma.12G059500 Glycine max
Glyma.13G121000 Glycine max
Glyma.18G185900 Glycine max
Glyma.19G162600 Glycine max
Glyma.20G206000 Glycine max
Gohir.A01G221650 Gossypium hirsutum
Gohir.A07G100600 Gossypium hirsutum
Gohir.A07G210900 Gossypium hirsutum
Gohir.A08G060700 Gossypium hirsutum
Gohir.A10G112600 Gossypium hirsutum
Gohir.A11G128800 Gossypium hirsutum
Gohir.D01G210800 Gossypium hirsutum
Gohir.D07G104800 Gossypium hirsutum
Gohir.D07G216900 Gossypium hirsutum
Gohir.D08G069900 Gossypium hirsutum
Gohir.D10G154000 Gossypium hirsutum
Gohir.D11G134600 Gossypium hirsutum
Gorai.001G112700 Gossypium raimondii
Gorai.001G251300 Gossypium raimondii
Gorai.002G256500 Gossypium raimondii
Gorai.004G073500 Gossypium raimondii
Gorai.007G144000 Gossypium raimondii
Gorai.011G172000 Gossypium raimondii
GSVIVG01024902001 Vitis vinifera
HanXRQChr05g0136931 Helianthus annuus
HanXRQChr13g0406881 Helianthus annuus
HanXRQChr15g0468001 Helianthus annuus
Haze_11326 Corylus avellana
Haze_20841 Corylus avellana
Haze_24179 Corylus avellana
Haze_24183 Corylus avellana
Haze_24587 Corylus avellana
Haze_24591 Corylus avellana
Hma1.2p1_0273F.1_g109990 Hydrangea macrophylla
Hma1.2p1_0310F.1_g120770 Hydrangea macrophylla
Hma1.2p1_0766F.1_g215270 Hydrangea macrophylla
Hma1.2p1_0766F.1_g215275 Hydrangea macrophylla
Hma1.2p1_0766F.1_g215280 Hydrangea macrophylla
Hma1.2p1_0877F.1_g231700 Hydrangea macrophylla
Hma1.2p1_0986F.1_g244400 Hydrangea macrophylla
Hma1.2p1_3561F.1_g336760 Hydrangea macrophylla
Hma1.2p1_3561F.1_g336770 Hydrangea macrophylla
HPP92_002435 Vanilla planifolia
HPP92_006641 Vanilla planifolia
HPP92_012995 Vanilla planifolia
HPP92_012996 Vanilla planifolia
HPP92_014719 Vanilla planifolia
HPP92_018132 Vanilla planifolia
HPP92_019844 Vanilla planifolia
HPP92_025970 Vanilla planifolia
Lalb_Chr03g0042441 Lupinus albus
Lalb_Chr06g0162521 Lupinus albus
Lalb_Chr06g0169421 Lupinus albus
Lalb_Chr12g0209511 Lupinus albus
Lalb_Chr21g0312241 Lupinus albus
Lalb_Chr21g0312411 Lupinus albus
Lalb_Chr24g0397161 Lupinus albus
Lj1g0000248 Lotus japonicus
Lj1g0008168 Lotus japonicus
Lj3C796G1 Lonicera japonica
Lj3g0009800 Lotus japonicus
Lj5g0012414 Lotus japonicus
Lj5g0020505 Lotus japonicus
Lsat_1_v5_gn_3_122421 Lactuca sativa
Lsat_1_v5_gn_5_154101 Lactuca sativa
Lsat_1_v5_gn_8_72740 Lactuca sativa
Lsat_1_v5_gn_8_91341 Lactuca sativa
Lsat_1_v5_gn_9_24921 Lactuca sativa
Manes.01G169100 Manihot esculenta
Manes.01G199200 Manihot esculenta
Manes.02G128500 Manihot esculenta
Manes.03G167500 Manihot esculenta
Manes.05G087300 Manihot esculenta
Manes.09G095100 Manihot esculenta
Manes.09G095200 Manihot esculenta
MBI14_g11583_MAGBIO Magnolia biondii
MD03G1085800 Malus domestica
MD05G1201300 Malus domestica
MD10G1188100 Malus domestica
MD13G1209600 Malus domestica
MD16G1212300 Malus domestica
Medtr1g044225 Medicago truncatula
Medtr1g070250 Medicago truncatula
Medtr1g075430 Medicago truncatula
Medtr4g064873 Medicago truncatula
Medtr7g063220 Medicago truncatula
MELO3C006452.2 Cucumis melo
MELO3C018067.2 Cucumis melo
MELO3C020606.2 Cucumis melo
MELO3C026785.2 Cucumis melo
MELO3C026786.2 Cucumis melo
Migut.D00404 Erythranthe guttata
Migut.G00455 Erythranthe guttata
Migut.J00300 Erythranthe guttata
Migut.L01957 Erythranthe guttata
Nitab4.5_0000086g0190 Nicotiana tabacum
Nitab4.5_0000342g0290 Nicotiana tabacum
Nitab4.5_0002170g0050 Nicotiana tabacum
Nitab4.5_0003206g0010 Nicotiana tabacum
Nitab4.5_0004443g0010 Nicotiana tabacum
Nitab4.5_0011666g0020 Nicotiana tabacum
Nn1g02681 Nelumbo nucifera
Nn2g11224 Nelumbo nucifera
Nn2g13465 Nelumbo nucifera
Nn3g19594 Nelumbo nucifera
Oeu001852.1 Olea europaea
Oeu002592.1 Olea europaea
Oeu006878.1 Olea europaea
Oeu021417.1 Olea europaea
Oeu021418.1 Olea europaea
Oeu025822.1 Olea europaea
Oeu037460.1 Olea europaea
Oeu048712.1 Olea europaea
Oeu060943.1 Olea europaea
Os07g0417400 Oryza sativa ssp. japonica
Peaxi162Scf00024g00091 Petunia axillaris
Peaxi162Scf00094g00045 Petunia axillaris
Peaxi162Scf00584g00031 Petunia axillaris
PGR004G0106 Punica granatum
PGR031G0519 Punica granatum
PGR031G1151 Punica granatum
PGSC0003DMG400008820 Solanum tuberosum
PGSC0003DMG400011081 Solanum tuberosum
PGSC0003DMG400020068 Solanum tuberosum
PGSC0003DMG400031425 Solanum tuberosum
PGSC0003DMG400037217 Solanum tuberosum
Phvul.001G158800 Phaseolus vulgaris
Phvul.007G125400 Phaseolus vulgaris
Phvul.007G195500 Phaseolus vulgaris
Phvul.008G117400 Phaseolus vulgaris
Phvul.011G061500 Phaseolus vulgaris
Potri.002G041600 Populus trichocarpa
Potri.005G221500 Populus trichocarpa
Potri.006G089301 Populus trichocarpa
Potri.008G164100 Populus trichocarpa
Potri.009G037100 Populus trichocarpa
Potri.010G074400 Populus trichocarpa
Potri.016G101300 Populus trichocarpa
Prupe.1G034200 Prunus persica
Prupe.6G070100 Prunus persica
Prupe.6G260600 Prunus persica
Prupe.8G227900 Prunus persica
Psat3g136520 Pisum sativum
Psat6g057200 Pisum sativum
Psat6g108640 Pisum sativum
Psat6g124480 Pisum sativum
Psat7g210520 Pisum sativum
PSO210G2802 Papaver somniferum
PSO832G1971 Papaver somniferum
PSO832G3756 Papaver somniferum
QL01p029203 Quercus lobata
QL06p016447 Quercus lobata
QL07p029807 Quercus lobata
QL09p037723 Quercus lobata
QL10p007857 Quercus lobata
RcHm_v2.0_Chr4g0391211 Rosa chinensis
RcHm_v2.0_Chr5g0066391 Rosa chinensis
RcHm_v2.0_Chr6g0288891 Rosa chinensis
Rhsim01G0231800 Rhododendron simsii
Rhsim01G0266700 Rhododendron simsii
Rhsim04G0188900 Rhododendron simsii
Rhsim05G0195800 Rhododendron simsii
Sabra02G0033300 Salix brachista
Sabra05G0170400 Salix brachista
Sabra06G0067700 Salix brachista
Sabra08G0125100 Salix brachista
Sabra09G0026200 Salix brachista
Sabra10G0034200 Salix brachista
SalBow2G3068 Salvia bowleyana
SalBow4G0861 Salvia bowleyana
Sc05g0000800 Simmondsia chinensis
Sc19g0003470 Simmondsia chinensis
Sed0000631 Sechium edule
Sed0005982 Sechium edule
Sed0007668 Sechium edule
Sed0009868 Sechium edule
Sed0014823 Sechium edule
Sed0016768 Sechium edule
Sed0024312 Sechium edule
SEGI_29477 Sequoiadendron giganteum
SGA_v2.0_scaffold98G29338 Striga asiatica
Solyc06g083940.1 Solanum lycopersicum
Solyc09g011110.1 Solanum lycopersicum
Solyc09g066250.1 Solanum lycopersicum
Solyc09g089600.1 Solanum lycopersicum
Solyc10g084910.3 Solanum lycopersicum
Sopen09g005860 Solanum pennellii
Sopen09g027950 Solanum pennellii
Sopen10g034370 Solanum pennellii
Sp2g08370 Schrenkiella parvula
Sp3g07670 Schrenkiella parvula
Sp5g08560 Schrenkiella parvula
TAR362G0450 Trochodendron aralioides
TAR369G0396 Trochodendron aralioides
TAR623G1520 Trochodendron aralioides
TAR633G0829 Trochodendron aralioides
THA.LOC104801090 Tarenaya hassleriana
THA.LOC104805599 Tarenaya hassleriana
THA.LOC104809086 Tarenaya hassleriana
THA.LOC104816250 Tarenaya hassleriana
Thecc.01G262900 Theobroma cacao
Thecc.04G249000 Theobroma cacao
Thecc.05G034000 Theobroma cacao
Thecc.09G315300 Theobroma cacao
Thhalv10010804m.g Eutrema salsugineum
Thhalv10022039m.g Eutrema salsugineum
TPR.G23570 Trifolium pratense
TPR.G27236 Trifolium pratense
TPR.G28757 Trifolium pratense
TPR.G31262 Trifolium pratense
TPR.G34345 Trifolium pratense
TWI09G0910 Tripterygium wilfordii
TWI12G0921 Tripterygium wilfordii
TWI31G0428 Tripterygium wilfordii
TWI53G1351 Tripterygium wilfordii
TWI73G1059 Tripterygium wilfordii
TWI75G0825 Tripterygium wilfordii
TWI79G0060 Tripterygium wilfordii
unitig_749.g14183 Utricularia gibba
unitig_749.g14184 Utricularia gibba
VMungo1127G0590 Vigna mungo
VMungo1383G0930 Vigna mungo
Zm00001eb259200 Zea mays
Zm00001eb305910 Zea mays
Zm00001eb350420 Zea mays

User provided reference genes

Program Settings