Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18550 Brassica napus
A02p10430 Brassica napus
A03p41500 Brassica napus
A05p20250 Brassica napus
A05p29180 Brassica napus
A06p03200 Brassica napus
A10p11570 Brassica napus
Aa31LG10G3920 Aethionema arabicum
Aa31LG3G10240 Aethionema arabicum
Aa31LG8G6700 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1656 Anthoceros agrestis
Actinidia04339 Actinidia chinensis
Actinidia18743 Actinidia chinensis
Actinidia18744 Actinidia chinensis
Actinidia23692 Actinidia chinensis
Actinidia35280 Actinidia chinensis
Ah.04g165400 Amaranthus hybridus
AL1G58000 Arabidopsis lyrata
AL3G33610 Arabidopsis lyrata
AL7G25430 Arabidopsis lyrata
AL8G29610 Arabidopsis lyrata
Aqoxy1G02794 Aquilegia oxysepala
Aqoxy3G04316 Aquilegia oxysepala
Aqoxy4G01409 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.284VRN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9FY18V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9V79C6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FHLQ2C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JXHR5Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KDS6NW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L4L3GZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PP514R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SG7ZUH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WRW58P Arachis hypogaea
AT1G50360 Arabidopsis thaliana
AT3G19960 Arabidopsis thaliana
AT4G27370 Arabidopsis thaliana
AT5G54280 Arabidopsis thaliana
ATR0618G226 Amborella trichopoda
ATR0693G008 Amborella trichopoda
Atru.chr11.1236 Acer truncatum
Atru.chr2.2907 Acer truncatum
AUR62015599 Chenopodium quinoa
AUR62017730 Chenopodium quinoa
AUR62029311 Chenopodium quinoa
AUR62032952 Chenopodium quinoa
BcaB02g11133 Brassica carinata
BcaB03g15791 Brassica carinata
BcaB04g19073 Brassica carinata
BcaB05g22124 Brassica carinata
BcaB05g23478 Brassica carinata
BcaB06g26065 Brassica carinata
BcaB06g26847 Brassica carinata
BcaB08g35786 Brassica carinata
BcaC03g14343 Brassica carinata
BcaC04g20354 Brassica carinata
BcaC04g20725 Brassica carinata
BcaC05g27444 Brassica carinata
BcaC05g28391 Brassica carinata
BcaNung03033 Brassica carinata
BcaNung06533 Brassica carinata
BolC2t07820H Brassica oleracea
BolC3t17366H Brassica oleracea
BolC5t32133H Brassica oleracea
BolC5t33195H Brassica oleracea
BolC6t35648H Brassica oleracea
BolC6t35649H Brassica oleracea
BolC6t35654H Brassica oleracea
BolC9t57332H Brassica oleracea
BraA02t06109Z Brassica rapa
BraA03t13304Z Brassica rapa
BraA05t20935Z Brassica rapa
BraA05t21802Z Brassica rapa
BraA06t23531Z Brassica rapa
BraA10t43252Z Brassica rapa
C01p23500 Brassica napus
C02p17190 Brassica napus
C03p50820 Brassica napus
C05p33980 Brassica napus
C05p44670 Brassica napus
C06p05430 Brassica napus
C06p05470 Brassica napus
C06p05490 Brassica napus
C09p44590 Brassica napus
CAN.G1110.43 Capsicum annuum
CAN.G162.105 Capsicum annuum
CAN.G79.89 Capsicum annuum
CAN.G912.5 Capsicum annuum
CAN.G912.8 Capsicum annuum
CANSAT11G1345 Cannabis sativa
CANSAT78G0397 Cannabis sativa
CARHR040370 Cardamine hirsuta
CARHR095490 Cardamine hirsuta
CARHR235020 Cardamine hirsuta
CARHR267570 Cardamine hirsuta
Carub.0001s3944 Capsella rubella
Carub.0003s1986 Capsella rubella
Carub.0007s1350 Capsella rubella
Carub.0008s1463 Capsella rubella
Ca_01802_v3 Cicer arietinum L.
Ca_11258_v3 Cicer arietinum L.
Ca_12382_v3 Cicer arietinum L.
Ca_12389_v3 Cicer arietinum L.
Ca_23011_v3 Cicer arietinum L.
Ca_30471_v3 Cicer arietinum L.
Cc05_g12700 Coffea canephora
Cc05_g12710 Coffea canephora
Cc11_g00550 Coffea canephora
CDE02G3473 Ceratophyllum demersum
CDE04G3051 Ceratophyllum demersum
CDE07G0600 Ceratophyllum demersum
CDE11G1241 Ceratophyllum demersum
Cfa008775 Carpinus fangiana
Ciclev10007271m.g Citrus clementina
Ciclev10030552m.g Citrus clementina
CiPaw.05G171900 Carya illinoinensis
CiPaw.06G062300 Carya illinoinensis
CiPaw.11G176700 Carya illinoinensis
CiPaw.12G122800 Carya illinoinensis
ClCG02G014140 Citrullus lanatus
ClCG11G018470 Citrullus lanatus
COL.COLO4_09481 Corchorus olitorius
COL.COLO4_25346 Corchorus olitorius
COL.COLO4_33104 Corchorus olitorius
Cpa.g.sc60.82 Carica papaya
Cpa.g.sc80.116 Carica papaya
Cre09.g416250 Chlamydomonas reinhardtii
CsaV3_3G044360 Cucumis sativus L.
CsaV3_5G029000 Cucumis sativus L.
CSS0011464 Camellia sinensis var. sinensis
CSS0024601 Camellia sinensis var. sinensis
CSS0039822 Camellia sinensis var. sinensis
CSS0049999 Camellia sinensis var. sinensis
DCAR_000471 Daucus carota
DCAR_002605 Daucus carota
DCAR_008700 Daucus carota
DCAR_009986 Daucus carota
DCAR_012726 Daucus carota
DCAR_023473 Daucus carota
DCAR_023474 Daucus carota
DCAR_023475 Daucus carota
DCAR_026880 Daucus carota
Dinv08342 Davidia involucrata
Dinv13015 Davidia involucrata
Dinv17647 Davidia involucrata
Dinv22364 Davidia involucrata
Duzib052G0298 Durio zibethinus
Duzib132G0767 Durio zibethinus
Duzib170G0125 Durio zibethinus
Duzib213G0644 Durio zibethinus
Duzib248G0471 Durio zibethinus
ECA233G0992 Erigeron canadensis
ECA234G0053 Erigeron canadensis
ECA240G4716 Erigeron canadensis
ECA246G4134 Erigeron canadensis
EL10Ac4g08056 Beta vulgaris
EL10Ac9g22980 Beta vulgaris
Eucgr.F03356 Eucalyptus grandis
Eucgr.G02585 Eucalyptus grandis
FAN04G2919 Fragaria x ananassa
FAN07G1663 Fragaria x ananassa
FAN11G2529 Fragaria x ananassa
FAN12G3959 Fragaria x ananassa
FAN16G0033 Fragaria x ananassa
FAN16G0251 Fragaria x ananassa
FAN17G1852 Fragaria x ananassa
FAN21G0598 Fragaria x ananassa
FAN21G3523 Fragaria x ananassa
FAN25G0486 Fragaria x ananassa
FAN28G2379 Fragaria x ananassa
FvH4_3g21010 Fragaria vesca
FvH4_4g37130 Fragaria vesca
Glyma.06G254500 Glycine max
Glyma.09G284800 Glycine max
Glyma.10G286300 Glycine max
Glyma.12G147000 Glycine max
Glyma.12G219400 Glycine max
Glyma.13G281900 Glycine max
Glyma.15G213000 Glycine max
Glyma.20G001300 Glycine max
Glyma.20G102900 Glycine max
Gohir.A01G068800 Gossypium hirsutum
Gohir.A03G166200 Gossypium hirsutum
Gohir.A04G025900 Gossypium hirsutum
Gohir.A04G026200 Gossypium hirsutum
Gohir.A12G132200 Gossypium hirsutum
Gohir.A13G061800 Gossypium hirsutum
Gohir.A13G143500 Gossypium hirsutum
Gohir.D01G056200 Gossypium hirsutum
Gohir.D02G189400 Gossypium hirsutum
Gohir.D05G320720 Gossypium hirsutum
Gohir.D05G361800 Gossypium hirsutum
Gohir.D12G135800 Gossypium hirsutum
Gohir.D13G060200 Gossypium hirsutum
Gohir.D13G148200 Gossypium hirsutum
Gorai.002G076300 Gossypium raimondii
Gorai.005G212100 Gossypium raimondii
Gorai.008G147000 Gossypium raimondii
Gorai.009G430900 Gossypium raimondii
Gorai.012G016000 Gossypium raimondii
Gorai.013G068300 Gossypium raimondii
Gorai.013G166000 Gossypium raimondii
GSVIVG01014437001 Vitis vinifera
GSVIVG01034427001 Vitis vinifera
HanXRQChr05g0151611 Helianthus annuus
HanXRQChr08g0234651 Helianthus annuus
HanXRQChr08g0234661 Helianthus annuus
HanXRQChr12g0366221 Helianthus annuus
HanXRQChr13g0407311 Helianthus annuus
HanXRQChr16g0526111 Helianthus annuus
Haze_09530 Corylus avellana
Haze_11787 Corylus avellana
Hma1.2p1_0044F.1_g026280 Hydrangea macrophylla
HPP92_012355 Vanilla planifolia
HPP92_016556 Vanilla planifolia
HPP92_022656 Vanilla planifolia
Hund02188 Selenicereus undatus
Hund02190 Selenicereus undatus
Hund08632 Selenicereus undatus
Hund23374 Selenicereus undatus
Lalb_Chr01g0006401 Lupinus albus
Lalb_Chr02g0143641 Lupinus albus
Lalb_Chr03g0030391 Lupinus albus
Lalb_Chr10g0094881 Lupinus albus
Lalb_Chr19g0134501 Lupinus albus
Lalb_Chr20g0110011 Lupinus albus
Lalb_Chr25g0286761 Lupinus albus
Lj1A853G77 Lonicera japonica
Lj2g0009687 Lotus japonicus
Lj3A846G61 Lonicera japonica
Lj3g0008611 Lotus japonicus
Lj3g0021160 Lotus japonicus
Lj5g0006945 Lotus japonicus
Lj6C708G9 Lonicera japonica
Lj6C713G17 Lonicera japonica
Lj8A160G68 Lonicera japonica
Lsat_1_v5_gn_4_27700 Lactuca sativa
Lsat_1_v5_gn_5_6781 Lactuca sativa
Lsat_1_v5_gn_8_33300 Lactuca sativa
Lsat_1_v5_gn_9_95641 Lactuca sativa
Manes.03G116600 Manihot esculenta
Manes.04G064300 Manihot esculenta
Manes.15G083100 Manihot esculenta
Mapoly0024s0124 Marchantia polymorpha
MBI02_g05992_MAGBIO Magnolia biondii
MBI02_g35901_MAGBIO Magnolia biondii
MBI02_g48232_MAGBIO Magnolia biondii
MBI03_g41224_MAGBIO Magnolia biondii
MBI06_g27492_MAGBIO Magnolia biondii
MCO07G617 Micromonas commoda
MD03G1219000 Malus domestica
MD11G1237000 Malus domestica
MD13G1003300 Malus domestica
MD16G1004100 Malus domestica
Medtr1g023610 Medicago truncatula
Medtr1g038793 Medicago truncatula
Medtr1g114540 Medicago truncatula
Medtr2g081070 Medicago truncatula
Medtr6g007010 Medicago truncatula
Medtr8g464480 Medicago truncatula
MELO3C011755.2 Cucumis melo
MELO3C018189.2 Cucumis melo
Migut.E00682 Erythranthe guttata
Migut.H01902 Erythranthe guttata
Migut.L00868 Erythranthe guttata
Migut.M01858 Erythranthe guttata
MSTRG.2067 Avicennia marina
MSTRG.2068 Avicennia marina
Nitab4.5_0000146g0020 Nicotiana tabacum
Nitab4.5_0000207g0290 Nicotiana tabacum
Nitab4.5_0000297g0130 Nicotiana tabacum
Nitab4.5_0001258g0020 Nicotiana tabacum
Nitab4.5_0001320g0070 Nicotiana tabacum
Nitab4.5_0012832g0020 Nicotiana tabacum
Nn1g03913 Nelumbo nucifera
Nn1g06752 Nelumbo nucifera
Nn3g18592 Nelumbo nucifera
Nn4g25132 Nelumbo nucifera
Oeu019364.1 Olea europaea
Os07g0562800 Oryza sativa ssp. japonica
Os10g0488800 Oryza sativa ssp. japonica
Peaxi162Scf00181g00068 Petunia axillaris
Peaxi162Scf00334g00120 Petunia axillaris
Peaxi162Scf01216g00061 Petunia axillaris
PGR031G1990 Punica granatum
PGR142G0570 Punica granatum
PGSC0003DMG400019284 Solanum tuberosum
PGSC0003DMG400025028 Solanum tuberosum
Phvul.003G002200 Phaseolus vulgaris
Phvul.005G085900 Phaseolus vulgaris
Phvul.007G014600 Phaseolus vulgaris
Phvul.011G155300 Phaseolus vulgaris
Potri.001G407000 Populus trichocarpa
Potri.005G089200 Populus trichocarpa
Potri.007G074800 Populus trichocarpa
Potri.011G126800 Populus trichocarpa
Pp3c15_13490 Physcomitrium patens
Pp3c18_1430 Physcomitrium patens
Pp3c19_9660 Physcomitrium patens
Pp3c21_20730 Physcomitrium patens
Pp3c9_4230 Physcomitrium patens
PRCOL_00005613 Prasinoderma coloniale
Prupe.1G349100 Prunus persica
Prupe.4G190400 Prunus persica
Psat4g169560 Pisum sativum
Psat5g246920 Pisum sativum
Psat6g100120 Pisum sativum
Psat6g233720 Pisum sativum
Psat6g233760 Pisum sativum
PSO063G1244 Papaver somniferum
PSO210G1635 Papaver somniferum
PSO782G3069 Papaver somniferum
PSO832G1519 Papaver somniferum
QL03p045482 Quercus lobata
QL08p017742 Quercus lobata
RcHm_v2.0_Chr4g0446931 Rosa chinensis
RcHm_v2.0_Chr5g0036031 Rosa chinensis
RcHm_v2.0_Chr5g0036041 Rosa chinensis
Rhsim12G0089200 Rhododendron simsii
RhsimUnG0258700 Rhododendron simsii
Sabra05G0073400 Salix brachista
Sabra07G0063400 Salix brachista
Sabra11G0110700 Salix brachista
Sabra16G0268400 Salix brachista
Sabra16G0270700 Salix brachista
SalBow2G3495 Salvia bowleyana
Sc03g0009600 Simmondsia chinensis
Sc10g0006880 Simmondsia chinensis
Sc16g0006760 Simmondsia chinensis
Sed0005136 Sechium edule
Sed0008404 Sechium edule
Sed0010032 Sechium edule
Sed0014373 Sechium edule
SEGI_04371 Sequoiadendron giganteum
SEGI_39414 Sequoiadendron giganteum
SGA_v2.0_scaffold258G45744 Striga asiatica
SGA_v2.0_scaffold65G22233 Striga asiatica
SGA_v2.0_scaffold73G24318 Striga asiatica
SGA_v2.0_scaffold77G25192 Striga asiatica
SHI21213 Sapria himalayana
SMO139G0074 Selaginella moellendorffii
SMO147G0370 Selaginella moellendorffii
Solyc07g063590.4 Solanum lycopersicum
Solyc10g006820.4 Solanum lycopersicum
Sopen02g004940 Solanum pennellii
Sopen07g031770 Solanum pennellii
Sopen10g002740 Solanum pennellii
Sp1g37180 Schrenkiella parvula
Sp1g37190 Schrenkiella parvula
Sp3g17980 Schrenkiella parvula
Sp6g16320 Schrenkiella parvula
Sp7g25300 Schrenkiella parvula
TAR624G0601 Trochodendron aralioides
TAR626G1962 Trochodendron aralioides
TAR629G2757 Trochodendron aralioides
THA.LOC104799906 Tarenaya hassleriana
THA.LOC104801596 Tarenaya hassleriana
THA.LOC104811845 Tarenaya hassleriana
THA.LOC104826514 Tarenaya hassleriana
Thecc.02G154900 Theobroma cacao
Thecc.07G071000 Theobroma cacao
Thhalv10011193m.g Eutrema salsugineum
Thhalv10012475m.g Eutrema salsugineum
Thhalv10019925m.g Eutrema salsugineum
Thhalv10024254m.g Eutrema salsugineum
TPR.G20487 Trifolium pratense
TPR.G29788 Trifolium pratense
TPR.G32040 Trifolium pratense
TPR.G32864 Trifolium pratense
TPR.G34591 Trifolium pratense
TPR.G4106 Trifolium pratense
TWI38G1989 Tripterygium wilfordii
TWI39G0397 Tripterygium wilfordii
TWI53G0999 Tripterygium wilfordii
unitig_22.g6355 Utricularia gibba
unitig_26.g10598 Utricularia gibba
unitig_26.g9541 Utricularia gibba
vmacro09561 Vaccinium macrocarpon
vmacro15995 Vaccinium macrocarpon
vmacro23312 Vaccinium macrocarpon
vmacro23313 Vaccinium macrocarpon
VMungo0251G0678 Vigna mungo
VMungo0720G1272 Vigna mungo
VMungo1080G0534 Vigna mungo
VMungo1080G1650 Vigna mungo
VMungo1127G1735 Vigna mungo
Zm00001eb026480 Zea mays
Zm00001eb045250 Zea mays
Zm00001eb106890 Zea mays
Zm00001eb221190 Zea mays
Zm00001eb324250 Zea mays

User provided reference genes

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