Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02050 Brassica napus
A03p01090 Brassica napus
A04p15270 Brassica napus
A09p36010 Brassica napus
A10p24670 Brassica napus
A10p32680 Brassica napus
Aa31LG4G6990 Aethionema arabicum
Aa31LG6G12550 Aethionema arabicum
Aa31LG6G5350 Aethionema arabicum
Aa31sc157G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2395 Anthoceros agrestis
Actinidia05251 Actinidia chinensis
Actinidia19671 Actinidia chinensis
Actinidia19672 Actinidia chinensis
Actinidia40025 Actinidia chinensis
Ah.09g232370 Amaranthus hybridus
Ah.12g062480 Amaranthus hybridus
AL1G44380 Arabidopsis lyrata
AL5G31120 Arabidopsis lyrata
AL6G12560 Arabidopsis lyrata
AL6G24210 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.3RU1TJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7JH1PP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.99W7VW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CEXW72 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HX0G8S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R2T4RC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TKC36M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TZXT9X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W4576L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X97YI5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XXM8QR Arachis hypogaea
AT1G30440 Arabidopsis thaliana
AT5G03250 Arabidopsis thaliana
AT5G13600 Arabidopsis thaliana
ATR0048G006 Amborella trichopoda
ATR1098G078 Amborella trichopoda
Atru.chr12.795 Acer truncatum
Atru.chr12.796 Acer truncatum
Atru.chr8.1862 Acer truncatum
Atru.chr8.1863 Acer truncatum
AUR62018124 Chenopodium quinoa
AUR62033042 Chenopodium quinoa
AUR62034349 Chenopodium quinoa
AUR62034456 Chenopodium quinoa
AUR62042760 Chenopodium quinoa
BcaB01g05828 Brassica carinata
BcaB01g05850 Brassica carinata
BcaB07g32653 Brassica carinata
BcaB07g32676 Brassica carinata
BcaC01g00191 Brassica carinata
BcaC02g08884 Brassica carinata
BcaC04g19095 Brassica carinata
BcaC04g19096 Brassica carinata
BcaC04g19098 Brassica carinata
BcaC06g32046 Brassica carinata
BcaNung05259 Brassica carinata
BolC2t06572H Brassica oleracea
BolC3t12698H Brassica oleracea
BolC4t26537H Brassica oleracea
BolC5t31670H Brassica oleracea
BolC9t59194H Brassica oleracea
BolC9t60084H Brassica oleracea
BraA02t05177Z Brassica rapa
BraA03t09491Z Brassica rapa
BraA04t17167Z Brassica rapa
BraA09t39126Z Brassica rapa
BraA10t44530Z Brassica rapa
BraA10t45306Z Brassica rapa
C02p06280 Brassica napus
C03p01400 Brassica napus
C04p49490 Brassica napus
C05p29380 Brassica napus
C09p63480 Brassica napus
C09p73520 Brassica napus
CAN.G363.33 Capsicum annuum
CAN.G509.4 Capsicum annuum
CAN.G565.5 Capsicum annuum
CANSAT01G2600 Cannabis sativa
CANSAT35G0276 Cannabis sativa
CANSAT80G1030 Cannabis sativa
CARHR029810 Cardamine hirsuta
CARHR040510 Cardamine hirsuta
CARHR199840 Cardamine hirsuta
Carub.0001s2861 Capsella rubella
Carub.0006s0205 Capsella rubella
Carub.0006s1176 Capsella rubella
Ca_10564_v3 Cicer arietinum L.
Ca_11478_v3 Cicer arietinum L.
CBR_g21300 Chara braunii
CBR_g54939 Chara braunii
CBR_g54941 Chara braunii
Cc03_g15880 Coffea canephora
Cc09_g08380 Coffea canephora
CDE02G3285 Ceratophyllum demersum
CDE02G4405 Ceratophyllum demersum
CDE04G0731 Ceratophyllum demersum
CDE04G3047 Ceratophyllum demersum
CDE04G3734 Ceratophyllum demersum
CDE05G3004 Ceratophyllum demersum
CDE06G0082 Ceratophyllum demersum
CDE07G0176 Ceratophyllum demersum
Cfa000849 Carpinus fangiana
Cfa001653 Carpinus fangiana
Ciclev10013494m.g Citrus clementina
Ciclev10014591m.g Citrus clementina
Ciclev10031240m.g Citrus clementina
CiPaw.01G271800 Carya illinoinensis
CiPaw.02G173500 Carya illinoinensis
CiPaw.09G116600 Carya illinoinensis
CiPaw.10G086500 Carya illinoinensis
ClCG01G025070 Citrullus lanatus
ClCG05G021070 Citrullus lanatus
ClCG10G020290 Citrullus lanatus
COL.COLO4_27011 Corchorus olitorius
COL.COLO4_28416 Corchorus olitorius
COL.COLO4_36484 Corchorus olitorius
Cpa.g.sc17.77 Carica papaya
Cpa.g.sc456.1 Carica papaya
Cpa.g.sc53.89 Carica papaya
CsaV3_3G035810 Cucumis sativus L.
CsaV3_5G036230 Cucumis sativus L.
CsaV3_6G052270 Cucumis sativus L.
CSS0012048 Camellia sinensis var. sinensis
CSS0027384 Camellia sinensis var. sinensis
CSS0027591 Camellia sinensis var. sinensis
CSS0028133 Camellia sinensis var. sinensis
CSS0031215 Camellia sinensis var. sinensis
DCAR_003869 Daucus carota
DCAR_004863 Daucus carota
DCAR_007855 Daucus carota
DCAR_012758 Daucus carota
DCAR_014985 Daucus carota
DCAR_019100 Daucus carota
Dinv15905 Davidia involucrata
Dinv32190 Davidia involucrata
Dinv36427 Davidia involucrata
Dinv37290 Davidia involucrata
Dinv41334 Davidia involucrata
Duzib093G0388 Durio zibethinus
Duzib106G0806 Durio zibethinus
Duzib114G0282 Durio zibethinus
Duzib128G0465 Durio zibethinus
Duzib150G1555 Durio zibethinus
Duzib168G1561 Durio zibethinus
ECA236G2122 Erigeron canadensis
ECA238G1174 Erigeron canadensis
ECA238G1644 Erigeron canadensis
ECA248G3874 Erigeron canadensis
EL10Ac2g03030 Beta vulgaris
EL10Ac8g19593 Beta vulgaris
Eucgr.D00197 Eucalyptus grandis
Eucgr.E02480 Eucalyptus grandis
Eucgr.G02845 Eucalyptus grandis
Eucgr.J01082 Eucalyptus grandis
FAN01G1875 Fragaria x ananassa
FAN02G1871 Fragaria x ananassa
FAN03G2100 Fragaria x ananassa
FAN05G1180 Fragaria x ananassa
FAN06G4884 Fragaria x ananassa
FAN09G3155 Fragaria x ananassa
FAN10G0927 Fragaria x ananassa
FAN10G2243 Fragaria x ananassa
FAN11G1635 Fragaria x ananassa
FAN14G2494 Fragaria x ananassa
FAN16G3107 Fragaria x ananassa
FAN21G0856 Fragaria x ananassa
FAN25G1047 Fragaria x ananassa
FvH4_3g09890 Fragaria vesca
FvH4_6g16010 Fragaria vesca
FvH4_7g19310 Fragaria vesca
Glyma.09G085200 Glycine max
Glyma.10G053700 Glycine max
Glyma.10G210200 Glycine max
Glyma.13G140800 Glycine max
Glyma.13G221200 Glycine max
Glyma.15G193300 Glycine max
Glyma.20G180400 Glycine max
Gohir.A04G073900 Gossypium hirsutum
Gohir.A05G070500 Gossypium hirsutum
Gohir.A09G111600 Gossypium hirsutum
Gohir.A10G205000 Gossypium hirsutum
Gohir.A13G025800 Gossypium hirsutum
Gohir.D04G113000 Gossypium hirsutum
Gohir.D05G073500 Gossypium hirsutum
Gohir.D09G108200 Gossypium hirsutum
Gohir.D10G213200 Gossypium hirsutum
Gohir.D13G024400 Gossypium hirsutum
Gorai.006G125900 Gossypium raimondii
Gorai.009G074400 Gossypium raimondii
Gorai.009G417400 Gossypium raimondii
Gorai.011G238600 Gossypium raimondii
Gorai.013G027500 Gossypium raimondii
GSVIVG01016261001 Vitis vinifera
GSVIVG01021598001 Vitis vinifera
GSVIVG01025693001 Vitis vinifera
HanXRQChr01g0011341 Helianthus annuus
HanXRQChr04g0119211 Helianthus annuus
HanXRQChr09g0260551 Helianthus annuus
HanXRQChr11g0350081 Helianthus annuus
HanXRQChr14g0454331 Helianthus annuus
HanXRQChr14g0456801 Helianthus annuus
HanXRQChr15g0480921 Helianthus annuus
Haze_05754 Corylus avellana
Haze_05757 Corylus avellana
Haze_05759 Corylus avellana
Haze_16881 Corylus avellana
Haze_20585 Corylus avellana
Hma1.2p1_1600F.1_g293180 Hydrangea macrophylla
Hma1.2p1_1893F.1_g306740 Hydrangea macrophylla
HPP92_013999 Vanilla planifolia
HPP92_017714 Vanilla planifolia
HPP92_019936 Vanilla planifolia
HPP92_027360 Vanilla planifolia
HPP92_027361 Vanilla planifolia
Hund21518 Selenicereus undatus
Lalb_Chr02g0156121 Lupinus albus
Lalb_Chr06g0162411 Lupinus albus
Lalb_Chr06g0171521 Lupinus albus
Lalb_Chr08g0233221 Lupinus albus
Lalb_Chr11g0073431 Lupinus albus
Lalb_Chr15g0086661 Lupinus albus
Lalb_Chr23g0276001 Lupinus albus
Lj1C1164T17 Lonicera japonica
Lj2C16T1 Lonicera japonica
Lj3A981T68 Lonicera japonica
Lj5g0002334 Lotus japonicus
Lj5g0008016 Lotus japonicus
Lj6g0006271 Lotus japonicus
Lj6g0015325 Lotus japonicus
Lsat_1_v5_gn_2_109100 Lactuca sativa
Lsat_1_v5_gn_2_112440 Lactuca sativa
Lsat_1_v5_gn_7_31160 Lactuca sativa
Manes.06G060600 Manihot esculenta
Manes.07G099000 Manihot esculenta
Manes.08G007700 Manihot esculenta
Manes.09G068200 Manihot esculenta
Manes.14G134600 Manihot esculenta
Mapoly0074s0067 Marchantia polymorpha
Mapoly0101s0022 Marchantia polymorpha
MBI02_g19818_MAGBIO Magnolia biondii
MBI07_g30973_MAGBIO Magnolia biondii
MBI07_g42225_MAGBIO Magnolia biondii
MBI10_g44022_MAGBIO Magnolia biondii
MBI18_g11286_MAGBIO Magnolia biondii
MBI18_g44699_MAGBIO Magnolia biondii
MD01G1107700 Malus domestica
MD04G1096800 Malus domestica
MD05G1275200 Malus domestica
MD07G1173300 Malus domestica
MD10G1254600 Malus domestica
Medtr1g064360 Medicago truncatula
Medtr1g094850 Medicago truncatula
Medtr2g018750 Medicago truncatula
Medtr2g048375 Medicago truncatula
Medtr2g048390 Medicago truncatula
MELO3C007084.2 Cucumis melo
MELO3C009341.2 Cucumis melo
MELO3C012424.2 Cucumis melo
Migut.J00535 Erythranthe guttata
Migut.M01883 Erythranthe guttata
MSTRG.16283 Avicennia marina
MSTRG.7532 Avicennia marina
Nitab4.5_0000071g0100 Nicotiana tabacum
Nitab4.5_0000100g0160 Nicotiana tabacum
Nitab4.5_0000101g0170 Nicotiana tabacum
Nitab4.5_0000101g0210 Nicotiana tabacum
Nitab4.5_0000748g0130 Nicotiana tabacum
Nitab4.5_0000754g0230 Nicotiana tabacum
Nitab4.5_0002130g0020 Nicotiana tabacum
Nitab4.5_0005227g0040 Nicotiana tabacum
Nitab4.5_0006507g0020 Nicotiana tabacum
Nitab4.5_0008463g0010 Nicotiana tabacum
Nn2g10821 Nelumbo nucifera
Nn3g20255 Nelumbo nucifera
Nn4g26656 Nelumbo nucifera
Oeu001358.1 Olea europaea
Oeu014385.1 Olea europaea
Oeu015187.1 Olea europaea
Oeu041097.1 Olea europaea
Os01g0780600 Oryza sativa ssp. japonica
Os04g0636500 Oryza sativa ssp. japonica
Os08g0130600 Oryza sativa ssp. japonica
Os12g0613250 Oryza sativa ssp. japonica
Peaxi162Scf00123g00035 Petunia axillaris
Peaxi162Scf00155g01111 Petunia axillaris
Peaxi162Scf00370g00029 Petunia axillaris
Peaxi162Scf00488g00816 Petunia axillaris
PGR031G3312 Punica granatum
PGR083G2553 Punica granatum
PGR142G1566 Punica granatum
PGSC0003DMG400003168 Solanum tuberosum
PGSC0003DMG400017605 Solanum tuberosum
PGSC0003DMG400043102 Solanum tuberosum
Phvul.006G168000 Phaseolus vulgaris
Phvul.007G095600 Phaseolus vulgaris
Phvul.007G148900 Phaseolus vulgaris
Phvul.009G216900 Phaseolus vulgaris
Potri.001G357100 Populus trichocarpa
Potri.008G038600 Populus trichocarpa
Potri.010G223600 Populus trichocarpa
Potri.011G091100 Populus trichocarpa
Potri.016G090400 Populus trichocarpa
Pp3c24_15860 Physcomitrium patens
Pp3c8_17100 Physcomitrium patens
Prupe.2G212500 Prunus persica
Prupe.4G088800 Prunus persica
Prupe.6G236100 Prunus persica
Psat1g019640 Pisum sativum
Psat1g191520 Pisum sativum
Psat6g070880 Pisum sativum
Psat6g182840 Pisum sativum
PSO339G2848 Papaver somniferum
PSO339G3321 Papaver somniferum
PSO541G4714 Papaver somniferum
PSO675G8943 Papaver somniferum
QL05p053616 Quercus lobata
QL07p044320 Quercus lobata
QL08p055591 Quercus lobata
RcHm_v2.0_Chr1g0363191 Rosa chinensis
RcHm_v2.0_Chr3g0469731 Rosa chinensis
RcHm_v2.0_Chr5g0015601 Rosa chinensis
Rhsim02G0159900 Rhododendron simsii
Rhsim04G0146900 Rhododendron simsii
Rhsim05G0180700 Rhododendron simsii
Sabra08G0026200 Salix brachista
Sabra16G0096000 Salix brachista
Sabra16G0235100 Salix brachista
SalBow3G2155 Salvia bowleyana
SalBow4G0273 Salvia bowleyana
SalBow8G3017 Salvia bowleyana
SalBow8G5424 Salvia bowleyana
Sc06g0001730 Simmondsia chinensis
Sc17g0004680 Simmondsia chinensis
Sc20g0005380 Simmondsia chinensis
Sed0000502 Sechium edule
Sed0007681 Sechium edule
Sed0010338 Sechium edule
Sed0010904 Sechium edule
Sed0021350 Sechium edule
Sed0025251 Sechium edule
SEGI_01517 Sequoiadendron giganteum
SEGI_03803 Sequoiadendron giganteum
SEGI_11473 Sequoiadendron giganteum
SEGI_21657 Sequoiadendron giganteum
SGA_v2.0_scaffold223G42851 Striga asiatica
SGA_v2.0_scaffold40G15538 Striga asiatica
Solyc02g021640.3 Solanum lycopersicum
Solyc09g007820.2 Solanum lycopersicum
Solyc10g086137.2 Solanum lycopersicum
Sopen02g006200 Solanum pennellii
Sopen09g002660 Solanum pennellii
Sopen10g035520 Solanum pennellii
Sp1g26260 Schrenkiella parvula
Sp6g30430 Schrenkiella parvula
Sp6g39480 Schrenkiella parvula
TAR627G0148 Trochodendron aralioides
TAR627G0749 Trochodendron aralioides
TAR633G0457 Trochodendron aralioides
TAR636G2847 Trochodendron aralioides
THA.LOC104799720 Tarenaya hassleriana
THA.LOC104801538 Tarenaya hassleriana
THA.LOC104823236 Tarenaya hassleriana
THA.LOC104827304 Tarenaya hassleriana
Thecc.05G061200 Theobroma cacao
Thecc.09G241100 Theobroma cacao
Thecc.10G075800 Theobroma cacao
Thhalv10007010m.g Eutrema salsugineum
Thhalv10013087m.g Eutrema salsugineum
Thhalv10015450m.g Eutrema salsugineum
TPR.G18736 Trifolium pratense
TPR.G21204 Trifolium pratense
TPR.G22163 Trifolium pratense
TPR.G26238 Trifolium pratense
TPR.G26243 Trifolium pratense
TWI09G0773 Tripterygium wilfordii
TWI53G0994 Tripterygium wilfordii
TWI53G1326 Tripterygium wilfordii
TWI63G0564 Tripterygium wilfordii
TWI74G1641 Tripterygium wilfordii
unitig_749.g13809 Utricularia gibba
vmacro08714 Vaccinium macrocarpon
vmacro08715 Vaccinium macrocarpon
vmacro10969 Vaccinium macrocarpon
vmacro20031 Vaccinium macrocarpon
VMungo0540G0923 Vigna mungo
VMungo0720G1349 Vigna mungo
VMungo0720G1749 Vigna mungo
VMungo1309G0518 Vigna mungo
Zm00001eb050610 Zea mays
Zm00001eb069180 Zea mays
Zm00001eb151470 Zea mays
Zm00001eb261890 Zea mays
Zm00001eb305650 Zea mays
Zm00001eb310110 Zea mays

User provided reference genes

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