Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p25050 Brassica napus
A06p14570 Brassica napus
A06p42690 Brassica napus
A09p24910 Brassica napus
A09p59910 Brassica napus
Aa31LG2G13750 Aethionema arabicum
Aa31LG2G6710 Aethionema arabicum
Aa31LG5G13510 Aethionema arabicum
Aa31LG7G3220 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2683 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4864 Anthoceros agrestis
Actinidia03348 Actinidia chinensis
Actinidia07902 Actinidia chinensis
Actinidia16062 Actinidia chinensis
Actinidia25748 Actinidia chinensis
Ah.02g114410 Amaranthus hybridus
Ah.02g127270 Amaranthus hybridus
Ah.03g138080 Amaranthus hybridus
AL1G30970 Arabidopsis lyrata
AL1G46400 Arabidopsis lyrata
AL3G12460 Arabidopsis lyrata
AL5G14120 Arabidopsis lyrata
Aqoxy3G03840 Aquilegia oxysepala
Aqoxy4G02542 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6QX9MQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.84KAU9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R4E0UK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XYCH8I Arachis hypogaea
AT1G18530 Arabidopsis thaliana
AT1G32250 Arabidopsis thaliana
AT3G03000 Arabidopsis thaliana
AT3G25600 Arabidopsis thaliana
ATR0730G007 Amborella trichopoda
ATR0829G175 Amborella trichopoda
Atru.chr11.1431 Acer truncatum
Atru.chr6.1614 Acer truncatum
Atru.chr9.703 Acer truncatum
AUR62002072 Chenopodium quinoa
AUR62007765 Chenopodium quinoa
AUR62028185 Chenopodium quinoa
AUR62032167 Chenopodium quinoa
AUR62036926 Chenopodium quinoa
BcaB03g12986 Brassica carinata
BcaB03g13746 Brassica carinata
BcaB04g21390 Brassica carinata
BcaB07g30636 Brassica carinata
BcaB07g31870 Brassica carinata
BcaC04g21424 Brassica carinata
BcaC05g25750 Brassica carinata
BcaC05g27882 Brassica carinata
BcaC06g31129 Brassica carinata
BcaC06g33975 Brassica carinata
BcaNung03555 Brassica carinata
BNapus_Darmor_BZH_scaffold_129p00090 Brassica napus
BolC1t05855H Brassica oleracea
BolC5t30381H Brassica oleracea
BolC5t32632H Brassica oleracea
BolC7t43972H Brassica oleracea
BolC8t51883H Brassica oleracea
BolC9t56048H Brassica oleracea
BraA01t04600Z Brassica rapa
BraA05t21387Z Brassica rapa
BraA06t24584Z Brassica rapa
BraA06t27183Z Brassica rapa
BraA09t38079Z Brassica rapa
BraA09t41362Z Brassica rapa
C05p16800 Brassica napus
C05p38900 Brassica napus
C07p34430 Brassica napus
C08p43340 Brassica napus
C09p31940 Brassica napus
CAN.G10.14 Capsicum annuum
CAN.G1131.20 Capsicum annuum
CAN.G726.27 Capsicum annuum
CAN.G781.2 Capsicum annuum
CANSAT21G2101 Cannabis sativa
CANSAT56G2817 Cannabis sativa
CANSAT64G0216 Cannabis sativa
CANSAT80G2641 Cannabis sativa
CARHR019150 Cardamine hirsuta
CARHR031620 Cardamine hirsuta
CARHR077020 Cardamine hirsuta
CARHR146580 Cardamine hirsuta
Carub.0001s1816 Capsella rubella
Carub.0001s3058 Capsella rubella
Carub.0003s0215 Capsella rubella
Carub.0005s0339 Capsella rubella
Ca_02437_v3 Cicer arietinum L.
Ca_21729_v3 Cicer arietinum L.
Ca_22514_v3 Cicer arietinum L.
CBR_g32243 Chara braunii
Cc04_g07750 Coffea canephora
Cc08_g03390 Coffea canephora
Cc11_g10980 Coffea canephora
CDE02G2511 Ceratophyllum demersum
CDE03G0486 Ceratophyllum demersum
CDE06G1550 Ceratophyllum demersum
CDE06G1887 Ceratophyllum demersum
CDE11G0908 Ceratophyllum demersum
CDE11G0952 Ceratophyllum demersum
Cfa008791 Carpinus fangiana
Cfa012500 Carpinus fangiana
Cfa012508 Carpinus fangiana
Cfa016041 Carpinus fangiana
Ciclev10002732m.g Citrus clementina
Ciclev10023347m.g Citrus clementina
Ciclev10024019m.g Citrus clementina
Ciclev10032937m.g Citrus clementina
Ciclev10033905m.g Citrus clementina
CiPaw.05G117200 Carya illinoinensis
CiPaw.06G098300 Carya illinoinensis
CiPaw.11G097600 Carya illinoinensis
CiPaw.12G067400 Carya illinoinensis
CiPaw.15G123000 Carya illinoinensis
ClCG06G015160 Citrullus lanatus
ClCG10G001360 Citrullus lanatus
COL.COLO4_11245 Corchorus olitorius
COL.COLO4_16957 Corchorus olitorius
COL.COLO4_32184 Corchorus olitorius
Cpa.g.sc1.247 Carica papaya
Cpa.g.sc13.81 Carica papaya
Cpa.g.sc90.10 Carica papaya
Cre14.g617950 Chlamydomonas reinhardtii
CsaV3_1G003480 Cucumis sativus L.
CsaV3_3G001430 Cucumis sativus L.
CsaV3_5G033780 Cucumis sativus L.
CSS0004986 Camellia sinensis var. sinensis
CSS0013916 Camellia sinensis var. sinensis
CSS0017237 Camellia sinensis var. sinensis
CSS0020659 Camellia sinensis var. sinensis
CSS0033360 Camellia sinensis var. sinensis
CSS0039564 Camellia sinensis var. sinensis
DCAR_004280 Daucus carota
DCAR_008236 Daucus carota
DCAR_026198 Daucus carota
DCAR_030133 Daucus carota
Dinv25248 Davidia involucrata
Dinv28992 Davidia involucrata
Dinv36869 Davidia involucrata
Dinv38606 Davidia involucrata
Duzib068G0040 Durio zibethinus
Duzib068G1096 Durio zibethinus
Duzib205G0162 Durio zibethinus
Duzib205G1182 Durio zibethinus
Duzib251G0790 Durio zibethinus
ECA232G4640 Erigeron canadensis
ECA246G3425 Erigeron canadensis
EL10Ac3g05066 Beta vulgaris
EL10Ac3g07423 Beta vulgaris
EL10Ac5g11227 Beta vulgaris
EL10Ac6g14548 Beta vulgaris
Eucgr.A02973 Eucalyptus grandis
Eucgr.B00667 Eucalyptus grandis
Eucgr.D02220 Eucalyptus grandis
Eucgr.G02382 Eucalyptus grandis
FAN01G1331 Fragaria x ananassa
FAN03G3211 Fragaria x ananassa
FAN08G2498 Fragaria x ananassa
FAN13G1649 Fragaria x ananassa
FAN15G0134 Fragaria x ananassa
FAN18G0932 Fragaria x ananassa
FAN18G2381 Fragaria x ananassa
FAN20G0259 Fragaria x ananassa
FAN22G2286 Fragaria x ananassa
FAN24G1863 Fragaria x ananassa
FAN27G1116 Fragaria x ananassa
FvH4_2g21960 Fragaria vesca
FvH4_4g28451 Fragaria vesca
FvH4_7g34050 Fragaria vesca
Glyma.04G144800 Glycine max
Glyma.05G015500 Glycine max
Glyma.06G208800 Glycine max
Glyma.11G182700 Glycine max
Glyma.12G089800 Glycine max
Glyma.16G099600 Glycine max
Gohir.1Z049405 Gossypium hirsutum
Gohir.A03G000039 Gossypium hirsutum
Gohir.A07G057000 Gossypium hirsutum
Gohir.A08G154200 Gossypium hirsutum
Gohir.A11G034900 Gossypium hirsutum
Gohir.A12G185200 Gossypium hirsutum
Gohir.A12G206650 Gossypium hirsutum
Gohir.D03G175600 Gossypium hirsutum
Gohir.D07G061300 Gossypium hirsutum
Gohir.D08G175025 Gossypium hirsutum
Gohir.D11G038400 Gossypium hirsutum
Gohir.D12G176200 Gossypium hirsutum
Gohir.D12G188100 Gossypium hirsutum
Gohir.D12G209150 Gossypium hirsutum
Gorai.001G065000 Gossypium raimondii
Gorai.003G184700 Gossypium raimondii
Gorai.004G182700 Gossypium raimondii
Gorai.007G041100 Gossypium raimondii
Gorai.008G188600 Gossypium raimondii
Gorai.008G201600 Gossypium raimondii
Gorai.008G224600 Gossypium raimondii
GSVIVG01008204001 Vitis vinifera
GSVIVG01012006001 Vitis vinifera
GSVIVG01013071001 Vitis vinifera
HanXRQChr02g0037411 Helianthus annuus
HanXRQChr14g0446781 Helianthus annuus
HanXRQChr16g0501611 Helianthus annuus
HanXRQChr16g0502031 Helianthus annuus
HanXRQChr17g0538101 Helianthus annuus
HanXRQChr17g0551411 Helianthus annuus
Haze_00415 Corylus avellana
Haze_08161 Corylus avellana
Haze_08170 Corylus avellana
Haze_11803 Corylus avellana
Hma1.2p1_0572F.1_g181240 Hydrangea macrophylla
Hma1.2p1_0870F.1_g230840 Hydrangea macrophylla
Hma1.2p1_1391F.1_g280130 Hydrangea macrophylla
HPP92_022067 Vanilla planifolia
HPP92_024715 Vanilla planifolia
Lalb_Chr04g0255111 Lupinus albus
Lalb_Chr05g0225781 Lupinus albus
Lalb_Chr07g0178491 Lupinus albus
Lalb_Chr09g0334131 Lupinus albus
Lalb_Chr09g0334531 Lupinus albus
Lalb_Chr13g0302521 Lupinus albus
Lj1g0025352 Lotus japonicus
Lj2P233T22 Lonicera japonica
Lj3P1023T38 Lonicera japonica
Lj4g0002548 Lotus japonicus
Lj4g0014677 Lotus japonicus
Lj4g0019983 Lotus japonicus
Lj5P141T39 Lonicera japonica
Lj8P307T28 Lonicera japonica
Lsat_1_v5_gn_1_15680 Lactuca sativa
Lsat_1_v5_gn_3_19641 Lactuca sativa
Lsat_1_v5_gn_3_60220 Lactuca sativa
Lsat_1_v5_gn_4_111760 Lactuca sativa
Lsat_1_v5_gn_5_24140 Lactuca sativa
Lsat_1_v5_gn_8_37940 Lactuca sativa
Manes.05G117100 Manihot esculenta
Manes.06G075800 Manihot esculenta
Manes.09G125300 Manihot esculenta
Manes.14G095200 Manihot esculenta
Mapoly0001s0184 Marchantia polymorpha
MCO13G590 Micromonas commoda
MD01G1013200 Malus domestica
MD06G1025600 Malus domestica
MD06G1209000 Malus domestica
MD13G1050700 Malus domestica
MD14G1219400 Malus domestica
MD16G1051200 Malus domestica
MD16G1280800 Malus domestica
Medtr4g112460 Medicago truncatula
Medtr8g066630 Medicago truncatula
Medtr8g069915 Medicago truncatula
MELO3C012195.2 Cucumis melo
MELO3C013829.2 Cucumis melo
MELO3C017273.2 Cucumis melo
Migut.E00277 Erythranthe guttata
Migut.E00757 Erythranthe guttata
MSTRG.13490 Avicennia marina
MSTRG.13741 Avicennia marina
MSTRG.2002 Avicennia marina
MSTRG.2277 Avicennia marina
Nitab4.5_0000021g0610 Nicotiana tabacum
Nitab4.5_0000221g0010 Nicotiana tabacum
Nitab4.5_0000529g0080 Nicotiana tabacum
Nitab4.5_0000646g0070 Nicotiana tabacum
Nitab4.5_0001595g0010 Nicotiana tabacum
Nitab4.5_0001762g0040 Nicotiana tabacum
Nitab4.5_0001965g0080 Nicotiana tabacum
Nitab4.5_0003007g0040 Nicotiana tabacum
Nitab4.5_0004342g0030 Nicotiana tabacum
Nitab4.5_0004878g0060 Nicotiana tabacum
Nn1g00188 Nelumbo nucifera
Nn3g17653 Nelumbo nucifera
Nn4g23654 Nelumbo nucifera
Nn6g34846 Nelumbo nucifera
Nn8g38611 Nelumbo nucifera
Nn8g39980 Nelumbo nucifera
Oeu004276.1 Olea europaea
Oeu022246.1 Olea europaea
Oeu036228.1 Olea europaea
Oeu054551.1 Olea europaea
Os01g0505600 Oryza sativa ssp. japonica
Os01g0604500 Oryza sativa ssp. japonica
Os05g0577500 Oryza sativa ssp. japonica
Os12g0446300 Oryza sativa ssp. japonica
Peaxi162Scf00017g03010 Petunia axillaris
Peaxi162Scf00170g00820 Petunia axillaris
Peaxi162Scf00208g00173 Petunia axillaris
Peaxi162Scf00516g00618 Petunia axillaris
PGR031G0478 Punica granatum
PGR031G2010 Punica granatum
PGR031G2615 Punica granatum
PGR044G1455 Punica granatum
PGR083G2670 Punica granatum
PGR102G2226 Punica granatum
PGR119G1539 Punica granatum
PGSC0003DMG400003146 Solanum tuberosum
PGSC0003DMG400007456 Solanum tuberosum
PGSC0003DMG400014797 Solanum tuberosum
PGSC0003DMG400016011 Solanum tuberosum
PGSC0003DMG400024604 Solanum tuberosum
Phvul.003G179600 Phaseolus vulgaris
Phvul.003G281700 Phaseolus vulgaris
Phvul.003G283800 Phaseolus vulgaris
Phvul.009G201700 Phaseolus vulgaris
Potri.001G138000 Populus trichocarpa
Potri.003G095700 Populus trichocarpa
Potri.010G132800 Populus trichocarpa
Potri.015G052600 Populus trichocarpa
Pp3c11_8830 Physcomitrium patens
Pp3c7_16840 Physcomitrium patens
PRCOL_00004405 Prasinoderma coloniale
Prupe.1G301400 Prunus persica
Prupe.2G195000 Prunus persica
Prupe.5G029500 Prunus persica
Prupe.5G214100 Prunus persica
Psat4g044280 Pisum sativum
Psat4g113160 Pisum sativum
Psat4g122920 Pisum sativum
PSO063G7014 Papaver somniferum
PSO339G6712 Papaver somniferum
PSO384G2873 Papaver somniferum
PSO782G2106 Papaver somniferum
QL09p023488 Quercus lobata
QL10p022189 Quercus lobata
QL12p001321 Quercus lobata
RcHm_v2.0_Chr1g0384321 Rosa chinensis
RcHm_v2.0_Chr4g0436421 Rosa chinensis
RcHm_v2.0_Chr7g0184291 Rosa chinensis
RcHm_v2.0_Chr7g0211631 Rosa chinensis
Rhsim08G0139500 Rhododendron simsii
Rhsim09G0115200 Rhododendron simsii
Rhsim11G0020000 Rhododendron simsii
Sabra01G0106800 Salix brachista
Sabra03G0064600 Salix brachista
Sabra10G0101500 Salix brachista
SalBow8G0043 Salvia bowleyana
SalBow8G3587 Salvia bowleyana
Sc04g0003830 Simmondsia chinensis
Sc04g0006970 Simmondsia chinensis
Sc11g0002940 Simmondsia chinensis
Sc13g0010910 Simmondsia chinensis
Sed0001246 Sechium edule
Sed0008547 Sechium edule
Sed0012807 Sechium edule
Sed0016193 Sechium edule
Sed0022283 Sechium edule
SEGI_12280 Sequoiadendron giganteum
SGA_v2.0_scaffold199G41248 Striga asiatica
SGA_v2.0_scaffold54G19443 Striga asiatica
SHI07357 Sapria himalayana
Solyc01g010020.3 Solanum lycopersicum
Solyc03g097100.1 Solanum lycopersicum
Solyc03g114420.1 Solanum lycopersicum
Sopen01g005580 Solanum pennellii
Sopen03g027840 Solanum pennellii
Sopen03g033520 Solanum pennellii
Sopen04g001990 Solanum pennellii
Sopen08g025070 Solanum pennellii
Sp1g16480 Schrenkiella parvula
Sp1g27930 Schrenkiella parvula
Sp2g14880 Schrenkiella parvula
Sp3g02060 Schrenkiella parvula
TAR371G0946 Trochodendron aralioides
TAR629G0503 Trochodendron aralioides
TAR629G0854 Trochodendron aralioides
TAR629G3503 Trochodendron aralioides
TAR636G3615 Trochodendron aralioides
THA.LOC104805236 Tarenaya hassleriana
THA.LOC104808299 Tarenaya hassleriana
THA.LOC104813895 Tarenaya hassleriana
THA.LOC104814420 Tarenaya hassleriana
THA.LOC104820889 Tarenaya hassleriana
THA.LOC104827207 Tarenaya hassleriana
Thecc.02G364800 Theobroma cacao
Thecc.03G114700 Theobroma cacao
Thecc.03G308700 Theobroma cacao
Thhalv10005049m.g Eutrema salsugineum
Thhalv10008984m.g Eutrema salsugineum
Thhalv10009363m.g Eutrema salsugineum
Thhalv10021666m.g Eutrema salsugineum
TPR.G24805 Trifolium pratense
TPR.G2778 Trifolium pratense
TPR.G3356 Trifolium pratense
TWI15G0702 Tripterygium wilfordii
TWI15G1153 Tripterygium wilfordii
TWI60G1500 Tripterygium wilfordii
TWI79G0153 Tripterygium wilfordii
unitig_52.g17151 Utricularia gibba
unitig_62.g23707 Utricularia gibba
vmacro00291 Vaccinium macrocarpon
vmacro00298 Vaccinium macrocarpon
vmacro10500 Vaccinium macrocarpon
VMungo0251G1114 Vigna mungo
VMungo0251G2674 Vigna mungo
VMungo1215G1230 Vigna mungo
VMungo1309G2711 Vigna mungo
Zm00001eb161480 Zea mays
Zm00001eb202510 Zea mays
Zm00001eb224870 Zea mays
Zm00001eb296740 Zea mays

User provided reference genes

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