Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00860 Brassica napus
A04p16830 Brassica napus
A05p31980 Brassica napus
A07p45450 Brassica napus
Aa31LG4G310 Aethionema arabicum
Aa31LG6G15290 Aethionema arabicum
Aa31LG8G4710 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.827 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.263 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.400 Anthoceros agrestis
Actinidia00279 Actinidia chinensis
Actinidia08793 Actinidia chinensis
Actinidia09072 Actinidia chinensis
Actinidia15977 Actinidia chinensis
Actinidia24001 Actinidia chinensis
Actinidia26599 Actinidia chinensis
Actinidia28048 Actinidia chinensis
Ah.11g045120 Amaranthus hybridus
AL2G41510 Arabidopsis lyrata
AL3G30990 Arabidopsis lyrata
AL4G11860 Arabidopsis lyrata
AL7G12250 Arabidopsis lyrata
Aqoxy3G00015 Aquilegia oxysepala
Aqoxy6G00660 Aquilegia oxysepala
Aqoxy6G00758 Aquilegia oxysepala
Aqoxy7G01860 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1IX1EK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2HEE5R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GWDW3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HU2JKE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KKP5ML Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L74AP1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QLB2P0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SE4CNR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5SFGR Arachis hypogaea
AT1G80030 Arabidopsis thaliana
AT2G22360 Arabidopsis thaliana
AT3G17830 Arabidopsis thaliana
AT4G39960 Arabidopsis thaliana
ATR0564G115 Amborella trichopoda
ATR0782G046 Amborella trichopoda
ATR1134G116 Amborella trichopoda
Atru.chr1.2905 Acer truncatum
Atru.chr1.3483 Acer truncatum
Atru.chr9.1639 Acer truncatum
AUR62010151 Chenopodium quinoa
AUR62011510 Chenopodium quinoa
AUR62013147 Chenopodium quinoa
AUR62013865 Chenopodium quinoa
AUR62014865 Chenopodium quinoa
AUR62016329 Chenopodium quinoa
AUR62025825 Chenopodium quinoa
AUR62031070 Chenopodium quinoa
AUR62036728 Chenopodium quinoa
BcaB06g25847 Brassica carinata
BcaC02g08668 Brassica carinata
BcaC02g08714 Brassica carinata
BcaC05g28752 Brassica carinata
BcaC08g47566 Brassica carinata
BcaNung00920 Brassica carinata
BcaNung05194 Brassica carinata
BolC4t26733H Brassica oleracea
BolC5t33587H Brassica oleracea
BolC6t40441H Brassica oleracea
BraA04t17316Z Brassica rapa
BraA05t22029Z Brassica rapa
BraA07t32049Z Brassica rapa
C01p00990 Brassica napus
C04p51410 Brassica napus
C05p48520 Brassica napus
C06p54280 Brassica napus
CAN.G407.75 Capsicum annuum
CAN.G523.54 Capsicum annuum
CAN.G843.37 Capsicum annuum
CANSAT01G2018 Cannabis sativa
CANSAT56G1125 Cannabis sativa
CANSAT80G1180 Cannabis sativa
CARHR074450 Cardamine hirsuta
CARHR093180 Cardamine hirsuta
CARHR113570 Cardamine hirsuta
CARHR246720 Cardamine hirsuta
Carub.0002s2749 Capsella rubella
Carub.0003s1754 Capsella rubella
Carub.0004s0154 Capsella rubella
Carub.0007s0192 Capsella rubella
Ca_01052_v3 Cicer arietinum L.
Ca_16519_v3 Cicer arietinum L.
Ca_25351_v3 Cicer arietinum L.
CBR_g23776 Chara braunii
CBR_g600 Chara braunii
Cc02_g21370 Coffea canephora
Cc04_g04480 Coffea canephora
Cc04_g06000 Coffea canephora
CDE01G0238 Ceratophyllum demersum
CDE07G1725 Ceratophyllum demersum
CDE10G0088 Ceratophyllum demersum
Cfa001954 Carpinus fangiana
Cfa002631 Carpinus fangiana
Cfa020628 Carpinus fangiana
Cfa023766 Carpinus fangiana
Ciclev10008033m.g Citrus clementina
Ciclev10025441m.g Citrus clementina
Ciclev10025609m.g Citrus clementina
CiPaw.01G249000 Carya illinoinensis
CiPaw.03G143500 Carya illinoinensis
CiPaw.04G101400 Carya illinoinensis
CiPaw.15G145700 Carya illinoinensis
ClCG04G012880 Citrullus lanatus
ClCG07G012190 Citrullus lanatus
ClCG10G009010 Citrullus lanatus
COL.COLO4_11930 Corchorus olitorius
COL.COLO4_27271 Corchorus olitorius
COL.COLO4_28868 Corchorus olitorius
Cpa.g.sc3.370 Carica papaya
Cpa.g.sc67.41 Carica papaya
Cre12.g507650 Chlamydomonas reinhardtii
Cre12.g560700 Chlamydomonas reinhardtii
CsaV3_1G004960 Cucumis sativus L.
CsaV3_4G001970 Cucumis sativus L.
CsaV3_4G008850 Cucumis sativus L.
CSS0003477 Camellia sinensis var. sinensis
CSS0004815 Camellia sinensis var. sinensis
CSS0013061 Camellia sinensis var. sinensis
CSS0014971 Camellia sinensis var. sinensis
CSS0032570 Camellia sinensis var. sinensis
CSS0032888 Camellia sinensis var. sinensis
CSS0043154 Camellia sinensis var. sinensis
CSS0044304 Camellia sinensis var. sinensis
CSS0048846 Camellia sinensis var. sinensis
DCAR_001781 Daucus carota
DCAR_016675 Daucus carota
DCAR_021865 Daucus carota
DCAR_025519 Daucus carota
DCAR_029205 Daucus carota
Dinv06375 Davidia involucrata
Dinv09020 Davidia involucrata
Dinv24179 Davidia involucrata
Dinv30615 Davidia involucrata
Dinv38128 Davidia involucrata
Duzib084G0788 Durio zibethinus
Duzib147G0618 Durio zibethinus
Duzib187G1321 Durio zibethinus
Duzib235G0501 Durio zibethinus
ECA234G0025 Erigeron canadensis
ECA234G2864 Erigeron canadensis
ECA236G3962 Erigeron canadensis
ECA238G0284 Erigeron canadensis
EL10Ac5g11461 Beta vulgaris
EL10Ac8g20433 Beta vulgaris
EL10Ac9g21497 Beta vulgaris
EL10Ac9g21879 Beta vulgaris
Eucgr.H00540 Eucalyptus grandis
Eucgr.J03072 Eucalyptus grandis
Eucgr.K03340 Eucalyptus grandis
FAN02G1247 Fragaria x ananassa
FAN02G2757 Fragaria x ananassa
FAN04G0490 Fragaria x ananassa
FAN05G0721 Fragaria x ananassa
FAN05G5627 Fragaria x ananassa
FAN08G0061 Fragaria x ananassa
FAN08G0120 Fragaria x ananassa
FAN09G0014 Fragaria x ananassa
FAN09G1569 Fragaria x ananassa
FAN09G2336 Fragaria x ananassa
FAN14G4190 Fragaria x ananassa
FAN14G5097 Fragaria x ananassa
FAN14G5144 Fragaria x ananassa
FAN18G3573 Fragaria x ananassa
FvH4_5g17580 Fragaria vesca
FvH4_6g29530 Fragaria vesca
FvH4_6g30510 Fragaria vesca
FvH4_6g52160 Fragaria vesca
Glyma.05G177100 Glycine max
Glyma.07G103600 Glycine max
Glyma.08G134400 Glycine max
Glyma.08G213401 Glycine max
Glyma.11G241000 Glycine max
Glyma.15G006900 Glycine max
Glyma.18G016200 Glycine max
Gohir.A02G142300 Gossypium hirsutum
Gohir.A03G092100 Gossypium hirsutum
Gohir.A06G113200 Gossypium hirsutum
Gohir.A12G015400 Gossypium hirsutum
Gohir.D02G120900 Gossypium hirsutum
Gohir.D03G038000 Gossypium hirsutum
Gohir.D06G120600 Gossypium hirsutum
Gohir.D12G015750 Gossypium hirsutum
Gohir.D12G086100 Gossypium hirsutum
Gorai.003G040000 Gossypium raimondii
Gorai.005G133300 Gossypium raimondii
Gorai.008G015900 Gossypium raimondii
Gorai.010G140900 Gossypium raimondii
GSVIVG01006041001 Vitis vinifera
GSVIVG01008471001 Vitis vinifera
GSVIVG01017355001 Vitis vinifera
HanXRQChr10g0291721 Helianthus annuus
HanXRQChr10g0302831 Helianthus annuus
HanXRQChr11g0338041 Helianthus annuus
HanXRQChr12g0361561 Helianthus annuus
HanXRQChr14g0432901 Helianthus annuus
Haze_16570 Corylus avellana
Haze_18900 Corylus avellana
Haze_24897 Corylus avellana
Hma1.2p1_0242F.1_g100660 Hydrangea macrophylla
Hma1.2p1_0471F.1_g159550 Hydrangea macrophylla
Hma1.2p1_0522F.1_g171750 Hydrangea macrophylla
HPP92_017056 Vanilla planifolia
HPP92_023181 Vanilla planifolia
HPP92_024342 Vanilla planifolia
Hund00071 Selenicereus undatus
Hund02385 Selenicereus undatus
Hund06553 Selenicereus undatus
Hund21208 Selenicereus undatus
Lalb_Chr08g0231011 Lupinus albus
Lalb_Chr11g0075421 Lupinus albus
Lalb_Chr13g0295921 Lupinus albus
Lalb_Chr22g0353471 Lupinus albus
Lalb_Chr24g0395461 Lupinus albus
Lj2g0017828 Lotus japonicus
Lj2g0028108 Lotus japonicus
Lj3g0006241 Lotus japonicus
Lj5A160G57 Lonicera japonica
Lj5A160G58 Lonicera japonica
Lj5A74G67 Lonicera japonica
Lj5C236T9 Lonicera japonica
Lj6g0006903 Lotus japonicus
Lj6g0022484 Lotus japonicus
Lsat_1_v5_gn_5_108120 Lactuca sativa
Lsat_1_v5_gn_5_131441 Lactuca sativa
Lsat_1_v5_gn_5_78461 Lactuca sativa
Lsat_1_v5_gn_7_82060 Lactuca sativa
Manes.06G008600 Manihot esculenta
Manes.11G058000 Manihot esculenta
Manes.14G157300 Manihot esculenta
Manes.14G168300 Manihot esculenta
Mapoly0020s0120 Marchantia polymorpha
Mapoly0030s0106 Marchantia polymorpha
MBI02_g23215_MAGBIO Magnolia biondii
MBI02_g27289_MAGBIO Magnolia biondii
MBI15_g41550_MAGBIO Magnolia biondii
MBI19_g34085_MAGBIO Magnolia biondii
MCO13G088 Micromonas commoda
MD06G1231800 Malus domestica
MD06G1231900 Malus domestica
MD09G1219300 Malus domestica
MD14G1238500 Malus domestica
MD17G1202800 Malus domestica
MD17G1213500 Malus domestica
Medtr2g104030 Medicago truncatula
Medtr3g087030 Medicago truncatula
Medtr6g471050 Medicago truncatula
MELO3C001916.2 Cucumis melo
MELO3C017839.2 Cucumis melo
MELO3C018950.2 Cucumis melo
Migut.C01165 Erythranthe guttata
Migut.D01083 Erythranthe guttata
Migut.D01199 Erythranthe guttata
Migut.N03302 Erythranthe guttata
MSTRG.25399 Avicennia marina
MSTRG.9364 Avicennia marina
MSTRG.9421 Avicennia marina
Nitab4.5_0000480g0050 Nicotiana tabacum
Nitab4.5_0000863g0250 Nicotiana tabacum
Nitab4.5_0001093g0100 Nicotiana tabacum
Nitab4.5_0001619g0010 Nicotiana tabacum
Nitab4.5_0002046g0130 Nicotiana tabacum
Nitab4.5_0002450g0140 Nicotiana tabacum
Nitab4.5_0003463g0030 Nicotiana tabacum
Nitab4.5_0008560g0040 Nicotiana tabacum
Nn4g24317 Nelumbo nucifera
Nn5g30071 Nelumbo nucifera
Nn8g39531 Nelumbo nucifera
Oeu000250.1 Olea europaea
Oeu011164.1 Olea europaea
Oeu018808.1 Olea europaea
Oeu019234.1 Olea europaea
Os02g0804500 Oryza sativa ssp. japonica
Os05g0333500 Oryza sativa ssp. japonica
Os05g0334000 Oryza sativa ssp. japonica
Os05g0334400 Oryza sativa ssp. japonica
Peaxi162Scf00152g00931 Petunia axillaris
Peaxi162Scf00314g00437 Petunia axillaris
Peaxi162Scf00332g00632 Petunia axillaris
Peaxi162Scf01060g00011 Petunia axillaris
PGR031G2348 Punica granatum
PGR044G1031 Punica granatum
PGR083G1072 Punica granatum
PGSC0003DMG400012579 Solanum tuberosum
PGSC0003DMG401014186 Solanum tuberosum
Phvul.001G252900 Phaseolus vulgaris
Phvul.002G257300 Phaseolus vulgaris
Phvul.004G149000 Phaseolus vulgaris
Phvul.005G178800 Phaseolus vulgaris
Potri.003G031800 Populus trichocarpa
Potri.005G073900 Populus trichocarpa
Potri.007G094900 Populus trichocarpa
Potri.015G035300 Populus trichocarpa
Pp3c11_18990 Physcomitrium patens
Pp3c16_18820 Physcomitrium patens
Pp3c18_2150 Physcomitrium patens
Pp3c22_21460 Physcomitrium patens
Pp3c5_20400 Physcomitrium patens
Pp3c6_8560 Physcomitrium patens
Pp3c7_3290 Physcomitrium patens
PRCOL_00000592 Prasinoderma coloniale
PRCOL_00001987 Prasinoderma coloniale
PRCOL_00004859 Prasinoderma coloniale
Prupe.3G078100 Prunus persica
Prupe.3G088900 Prunus persica
Prupe.5G235700 Prunus persica
Psat1g030400 Pisum sativum
Psat5g090520 Pisum sativum
Psat5g303520 Pisum sativum
PSO017G4937 Papaver somniferum
PSO017G5261 Papaver somniferum
PSO170G0494 Papaver somniferum
PSO210G0906 Papaver somniferum
PSO447G0252 Papaver somniferum
PSO478G3242 Papaver somniferum
PSO781G0091 Papaver somniferum
QL05p030721 Quercus lobata
QL06p048741 Quercus lobata
QL10p031268 Quercus lobata
RcHm_v2.0_Chr2g0135071 Rosa chinensis
RcHm_v2.0_Chr2g0136911 Rosa chinensis
RcHm_v2.0_Chr7g0178061 Rosa chinensis
Rhsim05G0104700 Rhododendron simsii
Rhsim11G0137400 Rhododendron simsii
Rhsim12G0190700 Rhododendron simsii
Sabra03G0018100 Salix brachista
Sabra05G0060500 Salix brachista
Sabra07G0078300 Salix brachista
Sabra15G0029200 Salix brachista
Sc08g0003520 Simmondsia chinensis
Sc10g0009130 Simmondsia chinensis
Sc12g0008740 Simmondsia chinensis
Sc16g0009740 Simmondsia chinensis
Sed0006472 Sechium edule
Sed0008327 Sechium edule
Sed0010779 Sechium edule
Sed0012402 Sechium edule
Sed0025751 Sechium edule
SEGI_22084 Sequoiadendron giganteum
SEGI_23212 Sequoiadendron giganteum
SEGI_33345 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10487 Striga asiatica
SGA_v2.0_scaffold26G11345 Striga asiatica
SGA_v2.0_scaffold40G15674 Striga asiatica
SGA_v2.0_scaffold52G18995 Striga asiatica
SHI01461 Sapria himalayana
SMO137G0354 Selaginella moellendorffii
SMO192G0002 Selaginella moellendorffii
SMO329G0083 Selaginella moellendorffii
SMO347G0567 Selaginella moellendorffii
SMO351G0144 Selaginella moellendorffii
Solyc01g105340.4 Solanum lycopersicum
Solyc03g116790.4 Solanum lycopersicum
Solyc03g118500.3 Solanum lycopersicum
Sopen01g047850 Solanum pennellii
Sopen03g035710 Solanum pennellii
Sopen03g037380 Solanum pennellii
Sp3g15950 Schrenkiella parvula
Sp4g01390 Schrenkiella parvula
Sp5g35800 Schrenkiella parvula
Sp7g35910 Schrenkiella parvula
TAR376G0492 Trochodendron aralioides
TAR381G1134 Trochodendron aralioides
TAR625G0785 Trochodendron aralioides
TAR628G0286 Trochodendron aralioides
TAR629G0899 Trochodendron aralioides
THA.LOC104800440 Tarenaya hassleriana
THA.LOC104807682 Tarenaya hassleriana
THA.LOC104820337 Tarenaya hassleriana
THA.LOC104824881 Tarenaya hassleriana
Thecc.01G098800 Theobroma cacao
Thecc.02G136000 Theobroma cacao
Thecc.03G060200 Theobroma cacao
Thecc.06G029100 Theobroma cacao
Thhalv10000164m.g Eutrema salsugineum
Thhalv10018440m.g Eutrema salsugineum
Thhalv10020537m.g Eutrema salsugineum
Thhalv10025198m.g Eutrema salsugineum
TPR.G16019 Trifolium pratense
TPR.G37168 Trifolium pratense
TWI18G1067 Tripterygium wilfordii
TWI53G0718 Tripterygium wilfordii
TWI59G0302 Tripterygium wilfordii
TWI60G1575 Tripterygium wilfordii
TWI74G1318 Tripterygium wilfordii
TWI75G0679 Tripterygium wilfordii
TWI77G0246 Tripterygium wilfordii
unitig_60.g25609 Utricularia gibba
unitig_899.g14820 Utricularia gibba
vmacro01832 Vaccinium macrocarpon
vmacro16889 Vaccinium macrocarpon
vmacro19941 Vaccinium macrocarpon
VMungo0251G1290 Vigna mungo
VMungo0464G1878 Vigna mungo
VMungo1080G1849 Vigna mungo
VMungo1383G2915 Vigna mungo
Zm00001eb009060 Zea mays
Zm00001eb172900 Zea mays
Zm00001eb192080 Zea mays
Zm00001eb258200 Zea mays
Zm00001eb294320 Zea mays
Zm00001eb392350 Zea mays
Zm00001eb416450 Zea mays

User provided reference genes

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