Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p36220 Brassica napus
A05p31560 Brassica napus
A05p31580 Brassica napus
Aa31LG8G5020 Aethionema arabicum
Actinidia17120 Actinidia chinensis
Actinidia32268 Actinidia chinensis
Ah.06g182550 Amaranthus hybridus
AL3G31360 Arabidopsis lyrata
AL3G31370 Arabidopsis lyrata
Aqoxy5G03878 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0E8WJ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2DHH38 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.51RB73 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BM2ILG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D2WYYW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FNZ7AA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JC3SS3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RMH1PV Arachis hypogaea
AT3G18170 Arabidopsis thaliana
AT3G18180 Arabidopsis thaliana
ATR0681G005 Amborella trichopoda
ATR0691G091 Amborella trichopoda
ATR0691G235 Amborella trichopoda
Atru.chr9.936 Acer truncatum
Atru.chr9.937 Acer truncatum
Atru.chr9.938 Acer truncatum
AUR62001025 Chenopodium quinoa
AUR62015831 Chenopodium quinoa
AUR62020388 Chenopodium quinoa
BcaB04g20788 Brassica carinata
BcaC03g16022 Brassica carinata
BcaC05g28657 Brassica carinata
BcaC05g28659 Brassica carinata
BcaC08g43579 Brassica carinata
BcaC09g48775 Brassica carinata
BcaNung05740 Brassica carinata
BolC1t04566H Brassica oleracea
BolC5t33501H Brassica oleracea
BolC6t36051H Brassica oleracea
BraA01t03697Z Brassica rapa
BraA05t21991Z Brassica rapa
BraA05t23014Z Brassica rapa
BraA09t36521Z Brassica rapa
C01p46050 Brassica napus
C05p47870 Brassica napus
C05p47900 Brassica napus
C06p09790 Brassica napus
CAN.G1129.37 Capsicum annuum
CAN.G1129.38 Capsicum annuum
CAN.G1129.39 Capsicum annuum
CANSAT11G0992 Cannabis sativa
CANSAT25G2746 Cannabis sativa
CARHR093500 Cardamine hirsuta
CARHR093510 Cardamine hirsuta
Carub.0003s1792 Capsella rubella
Carub.0003s1793 Capsella rubella
Ca_17225_v3 Cicer arietinum L.
Ca_17433_v3 Cicer arietinum L.
Ca_29798_v3 Cicer arietinum L.
Cc04_g06720 Coffea canephora
Cc04_g06730 Coffea canephora
Cc05_g14100 Coffea canephora
Cc05_g14110 Coffea canephora
CDE06G2356 Ceratophyllum demersum
Cfa019712 Carpinus fangiana
Cfa019713 Carpinus fangiana
Cfa020303 Carpinus fangiana
Ciclev10010148m.g Citrus clementina
Ciclev10010510m.g Citrus clementina
Ciclev10010569m.g Citrus clementina
Ciclev10010793m.g Citrus clementina
CiPaw.11G192800 Carya illinoinensis
CiPaw.15G138200 Carya illinoinensis
ClCG04G010800 Citrullus lanatus
ClCG10G005240 Citrullus lanatus
COL.COLO4_03484 Corchorus olitorius
COL.COLO4_09702 Corchorus olitorius
COL.COLO4_19662 Corchorus olitorius
COL.COLO4_33953 Corchorus olitorius
COL.COLO4_33954 Corchorus olitorius
Cpa.g.sc3.447 Carica papaya
Cpa.g.sc3.448 Carica papaya
CsaV3_3G004940 Cucumis sativus L.
CsaV3_4G013390 Cucumis sativus L.
CSS0029383 Camellia sinensis var. sinensis
CSS0045267 Camellia sinensis var. sinensis
DCAR_006235 Daucus carota
DCAR_013193 Daucus carota
DCAR_015160 Daucus carota
DCAR_015161 Daucus carota
DCAR_015162 Daucus carota
DCAR_022587 Daucus carota
Dinv10411 Davidia involucrata
Dinv10412 Davidia involucrata
Dinv13556 Davidia involucrata
Dinv40785 Davidia involucrata
Duzib084G0145 Durio zibethinus
Duzib205G1308 Durio zibethinus
Duzib205G1481 Durio zibethinus
Duzib205G1828 Durio zibethinus
Duzib213G0623 Durio zibethinus
ECA233G1069 Erigeron canadensis
ECA233G2729 Erigeron canadensis
ECA233G3968 Erigeron canadensis
ECA236G1592 Erigeron canadensis
ECA240G0154 Erigeron canadensis
ECA240G4124 Erigeron canadensis
ECA240G4148 Erigeron canadensis
ECA248G3025 Erigeron canadensis
EL10Ac4g07755 Beta vulgaris
EL10Ac4g07756 Beta vulgaris
EL10Ac4g09115 Beta vulgaris
Eucgr.B00844 Eucalyptus grandis
Eucgr.F03488 Eucalyptus grandis
Eucgr.F03489 Eucalyptus grandis
Eucgr.H04827 Eucalyptus grandis
Eucgr.K02245 Eucalyptus grandis
Eucgr.L00065 Eucalyptus grandis
Eucgr.L03246 Eucalyptus grandis
FAN08G2246 Fragaria x ananassa
FAN08G3089 Fragaria x ananassa
FAN11G1749 Fragaria x ananassa
FAN13G2459 Fragaria x ananassa
FAN13G2678 Fragaria x ananassa
FAN14G0191 Fragaria x ananassa
FAN16G0482 Fragaria x ananassa
FAN18G2194 Fragaria x ananassa
FAN18G2744 Fragaria x ananassa
FvH4_3g23260 Fragaria vesca
FvH4_5g16870 Fragaria vesca
FvH4_5g16880 Fragaria vesca
FvH4_6g19650 Fragaria vesca
Glyma.05G242900 Glycine max
Glyma.08G050300 Glycine max
Gohir.A01G083100 Gossypium hirsutum
Gohir.A09G050700 Gossypium hirsutum
Gohir.A09G050800 Gossypium hirsutum
Gohir.A09G051000 Gossypium hirsutum
Gohir.A12G267400 Gossypium hirsutum
Gohir.D01G069600 Gossypium hirsutum
Gohir.D09G051700 Gossypium hirsutum
Gohir.D09G051800 Gossypium hirsutum
Gohir.D09G052000 Gossypium hirsutum
Gohir.D09G052100 Gossypium hirsutum
Gohir.D12G267900 Gossypium hirsutum
Gorai.002G092000 Gossypium raimondii
Gorai.006G057500 Gossypium raimondii
Gorai.006G057600 Gossypium raimondii
Gorai.006G057700 Gossypium raimondii
Gorai.006G057800 Gossypium raimondii
Gorai.008G287900 Gossypium raimondii
GSVIVG01008368001 Vitis vinifera
GSVIVG01037699001 Vitis vinifera
HanXRQChr01g0025801 Helianthus annuus
HanXRQChr08g0229621 Helianthus annuus
HanXRQChr13g0408081 Helianthus annuus
HanXRQChr13g0408101 Helianthus annuus
HanXRQChr13g0408551 Helianthus annuus
Haze_09718 Corylus avellana
Haze_18783 Corylus avellana
Hma1.2p1_0036F.1_g023280 Hydrangea macrophylla
Hma1.2p1_0036F.1_g023290 Hydrangea macrophylla
Hma1.2p1_0036F.1_g023300 Hydrangea macrophylla
Hma1.2p1_0036F.1_g023310 Hydrangea macrophylla
Hma1.2p1_0351F.1_g132840 Hydrangea macrophylla
Hma1.2p1_0660F.1_g197720 Hydrangea macrophylla
Hma1.2p1_2862F.1_g329580 Hydrangea macrophylla
Hma1.2p1_3078F.1_g332410 Hydrangea macrophylla
HPP92_002484 Vanilla planifolia
HPP92_004889 Vanilla planifolia
HPP92_020140 Vanilla planifolia
Hund20477 Selenicereus undatus
Hund20480 Selenicereus undatus
Hund23220 Selenicereus undatus
Hund23221 Selenicereus undatus
Lalb_Chr05g0221931 Lupinus albus
Lalb_Chr09g0330621 Lupinus albus
Lj4g0008417 Lotus japonicus
Lj5C153T12 Lonicera japonica
Lj8A171G41 Lonicera japonica
Lj8A171T46 Lonicera japonica
Lj8C171T12 Lonicera japonica
Lj9P422T35 Lonicera japonica
Lj9P422T41 Lonicera japonica
Lsat_1_v5_gn_4_14441 Lactuca sativa
Lsat_1_v5_gn_8_960 Lactuca sativa
Lsat_1_v5_gn_9_92441 Lactuca sativa
Lsat_1_v5_gn_9_92461 Lactuca sativa
Lsat_1_v5_gn_9_92580 Lactuca sativa
Manes.04G056980 Manihot esculenta
MBI07_g01736_MAGBIO Magnolia biondii
MBI07_g19550_MAGBIO Magnolia biondii
MBI16_g29819_MAGBIO Magnolia biondii
MD03G1195900 Malus domestica
MD06G1222600 Malus domestica
MD06G1222700 Malus domestica
Medtr1g007385 Medicago truncatula
Medtr1g106570 Medicago truncatula
Medtr4g058715 Medicago truncatula
Medtr5g011170 Medicago truncatula
Medtr6g045593 Medicago truncatula
Medtr8g069555 Medicago truncatula
Medtr8g106640 Medicago truncatula
Medtr8g106650 Medicago truncatula
MELO3C014192.2 Cucumis melo
Migut.D01436 Erythranthe guttata
Migut.D01438 Erythranthe guttata
Migut.D01439 Erythranthe guttata
Migut.D01468 Erythranthe guttata
Migut.I00410 Erythranthe guttata
Migut.I00415 Erythranthe guttata
Migut.I00416 Erythranthe guttata
Migut.I00418 Erythranthe guttata
Migut.M01728 Erythranthe guttata
Migut.M01729 Erythranthe guttata
Migut.M01730 Erythranthe guttata
MSTRG.6945 Avicennia marina
MSTRG.6946 Avicennia marina
Nitab4.5_0001456g0020 Nicotiana tabacum
Nitab4.5_0005241g0060 Nicotiana tabacum
Nitab4.5_0005692g0020 Nicotiana tabacum
Nn1g03447 Nelumbo nucifera
Nn1g04573 Nelumbo nucifera
Nn1g07235 Nelumbo nucifera
Nn3g18003 Nelumbo nucifera
Nn4g24021 Nelumbo nucifera
Nn5g30779 Nelumbo nucifera
Oeu008013.1 Olea europaea
Oeu013127.1 Olea europaea
Oeu013131.1 Olea europaea
Oeu014374.1 Olea europaea
Oeu026401.1 Olea europaea
Oeu026403.1 Olea europaea
Oeu041171.2 Olea europaea
Oeu055189.1 Olea europaea
Os01g0118400 Oryza sativa ssp. japonica
Os01g0118600 Oryza sativa ssp. japonica
Os01g0118700 Oryza sativa ssp. japonica
Os01g0119000 Oryza sativa ssp. japonica
Os01g0119100 Oryza sativa ssp. japonica
Os02g0135500 Oryza sativa ssp. japonica
Os02g0327700 Oryza sativa ssp. japonica
Os02g0329800 Oryza sativa ssp. japonica
Os02g0330200 Oryza sativa ssp. japonica
Os02g0331200 Oryza sativa ssp. japonica
Os03g0567600 Oryza sativa ssp. japonica
Os04g0196600 Oryza sativa ssp. japonica
Os06g0246400 Oryza sativa ssp. japonica
Os06g0311000 Oryza sativa ssp. japonica
Os06g0470000 Oryza sativa ssp. japonica
Os06g0475400 Oryza sativa ssp. japonica
Os06g0707000 Oryza sativa ssp. japonica
Os06g0707200 Oryza sativa ssp. japonica
Os08g0446550 Oryza sativa ssp. japonica
Os10g0492200 Oryza sativa ssp. japonica
Os12g0238900 Oryza sativa ssp. japonica
Peaxi162Scf00683g00236 Petunia axillaris
Peaxi162Scf00683g00249 Petunia axillaris
PGR031G0018 Punica granatum
PGR044G1263 Punica granatum
PGR083G0025 Punica granatum
PGSC0003DMG400005663 Solanum tuberosum
PGSC0003DMG400005664 Solanum tuberosum
Phvul.002G326500 Phaseolus vulgaris
Potri.012G051500 Populus trichocarpa
Potri.015G042200 Populus trichocarpa
Potri.015G042300 Populus trichocarpa
Prupe.4G220000 Prunus persica
Prupe.5G227200 Prunus persica
Prupe.5G227600 Prunus persica
Psat6g093600 Pisum sativum
Psat7g002440 Pisum sativum
PSO017G0137 Papaver somniferum
PSO017G0660 Papaver somniferum
PSO017G2239 Papaver somniferum
PSO017G2641 Papaver somniferum
PSO017G3068 Papaver somniferum
PSO017G6557 Papaver somniferum
PSO017G6881 Papaver somniferum
PSO478G0647 Papaver somniferum
PSO478G1536 Papaver somniferum
PSO478G3187 Papaver somniferum
PSO478G3756 Papaver somniferum
PSO541G2789 Papaver somniferum
PSO541G3196 Papaver somniferum
PSO541G3418 Papaver somniferum
PSO675G0106 Papaver somniferum
PSO675G5618 Papaver somniferum
PSO675G7752 Papaver somniferum
QL08p006912 Quercus lobata
QL09p024253 Quercus lobata
QL10p027198 Quercus lobata
QL10p027230 Quercus lobata
RcHm_v2.0_Chr5g0040951 Rosa chinensis
RcHm_v2.0_Chr7g0179171 Rosa chinensis
RcHm_v2.0_Chr7g0179181 Rosa chinensis
RcHm_v2.0_Chr7g0179191 Rosa chinensis
RcHm_v2.0_Chr7g0179201 Rosa chinensis
Rhsim06G0220500 Rhododendron simsii
Rhsim06G0220600 Rhododendron simsii
Rhsim06G0220700 Rhododendron simsii
Rhsim06G0220800 Rhododendron simsii
Rhsim06G0220900 Rhododendron simsii
Rhsim06G0221100 Rhododendron simsii
Rhsim06G0221300 Rhododendron simsii
Rhsim06G0221400 Rhododendron simsii
Rhsim06G0221500 Rhododendron simsii
Rhsim06G0221600 Rhododendron simsii
Rhsim06G0221700 Rhododendron simsii
Rhsim06G0221800 Rhododendron simsii
Rhsim06G0221900 Rhododendron simsii
Sabra12G0036100 Salix brachista
Sabra15G0043000 Salix brachista
Sabra15G0043100 Salix brachista
Sabra15G0044300 Salix brachista
Sabra15G0045200 Salix brachista
Sabra15G0045300 Salix brachista
Sabra15G0046800 Salix brachista
Sabra15G0047400 Salix brachista
Sabra15G0047500 Salix brachista
Sabra15G0049200 Salix brachista
Sabra15G0051100 Salix brachista
Sabra15G0051200 Salix brachista
Sabra15G0051700 Salix brachista
Sabra15G0052500 Salix brachista
Sabra15G0052700 Salix brachista
Sabra15G0054400 Salix brachista
Sabra15G0054500 Salix brachista
Sabra15G0054600 Salix brachista
Sabra15G0061000 Salix brachista
Sabra15G0061100 Salix brachista
SalBow1G7002 Salvia bowleyana
SalBow1G7203 Salvia bowleyana
SalBow1G7816 Salvia bowleyana
SalBow5G4037 Salvia bowleyana
SalBow5G5599 Salvia bowleyana
SalBow7G2104 Salvia bowleyana
SalBow7G4850 Salvia bowleyana
SalBow8G1191 Salvia bowleyana
SalBow8G2364 Salvia bowleyana
SalBow8G3104 Salvia bowleyana
SalBow8G4432 Salvia bowleyana
Sc03g0008430 Simmondsia chinensis
Sc03g0008440 Simmondsia chinensis
Sc03g0008450 Simmondsia chinensis
Sc12g0007470 Simmondsia chinensis
Sed0001976 Sechium edule
Sed0018632 Sechium edule
SGA_v2.0_scaffold215G42305 Striga asiatica
SGA_v2.0_scaffold25G10980 Striga asiatica
SGA_v2.0_scaffold313G48303 Striga asiatica
Solyc03g118930.2 Solanum lycopersicum
Solyc03g118940.4 Solanum lycopersicum
Sopen03g037870 Solanum pennellii
Sp3g16290 Schrenkiella parvula
TAR371G0916 Trochodendron aralioides
TAR383G0041 Trochodendron aralioides
TAR622G0916 Trochodendron aralioides
TAR629G0798 Trochodendron aralioides
TAR643G0004 Trochodendron aralioides
THA.LOC104809839 Tarenaya hassleriana
THA.LOC104820372 Tarenaya hassleriana
Thecc.03G045500 Theobroma cacao
Thecc.03G045600 Theobroma cacao
Thecc.03G046100 Theobroma cacao
Thecc.07G031300 Theobroma cacao
Thhalv10020483m.g Eutrema salsugineum
TPR.G12806 Trifolium pratense
TPR.G12946 Trifolium pratense
TPR.G2928 Trifolium pratense
TWI15G0109 Tripterygium wilfordii
TWI39G0250 Tripterygium wilfordii
TWI81G0185 Tripterygium wilfordii
unitig_578.g15993 Utricularia gibba
unitig_578.g15994 Utricularia gibba
unitig_749.g13419 Utricularia gibba
vmacro02207 Vaccinium macrocarpon
vmacro02208 Vaccinium macrocarpon
vmacro02209 Vaccinium macrocarpon
vmacro02210 Vaccinium macrocarpon
vmacro02211 Vaccinium macrocarpon
vmacro02212 Vaccinium macrocarpon
vmacro17795 Vaccinium macrocarpon
VMungo0251G3626 Vigna mungo
VMungo1127G0094 Vigna mungo
Zm00001eb027040 Zea mays
Zm00001eb125880 Zea mays
Zm00001eb125890 Zea mays
Zm00001eb125920 Zea mays
Zm00001eb125930 Zea mays
Zm00001eb125950 Zea mays
Zm00001eb125980 Zea mays
Zm00001eb144500 Zea mays
Zm00001eb203240 Zea mays
Zm00001eb209190 Zea mays
Zm00001eb227380 Zea mays
Zm00001eb229630 Zea mays
Zm00001eb231570 Zea mays
Zm00001eb241520 Zea mays
Zm00001eb270290 Zea mays
Zm00001eb277990 Zea mays
Zm00001eb334760 Zea mays
Zm00001eb334770 Zea mays
Zm00001eb334780 Zea mays
Zm00001eb335040 Zea mays
Zm00001eb355700 Zea mays
Zm00001eb382290 Zea mays
Zm00001eb382480 Zea mays
Zm00001eb382490 Zea mays
Zm00001eb382990 Zea mays
Zm00001eb383000 Zea mays

User provided reference genes

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