Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00360 Brassica napus
A05p36150 Brassica napus
A06p43900 Brassica napus
A06p48520 Brassica napus
A08p00410 Brassica napus
A08p23580 Brassica napus
Aa31LG10G600 Aethionema arabicum
Aa31LG2G7960 Aethionema arabicum
Aa31LG6G15880 Aethionema arabicum
Aa31LG8G590 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3491 Anthoceros agrestis
Actinidia01378 Actinidia chinensis
Actinidia03589 Actinidia chinensis
Actinidia04637 Actinidia chinensis
Actinidia11783 Actinidia chinensis
Actinidia12219 Actinidia chinensis
Actinidia30342 Actinidia chinensis
Actinidia33519 Actinidia chinensis
Ah.02g123710 Amaranthus hybridus
Ah.03g140050 Amaranthus hybridus
Ah.03g147420 Amaranthus hybridus
Ah.16g103160 Amaranthus hybridus
AL1G63680 Arabidopsis lyrata
AL3G25230 Arabidopsis lyrata
AL5G11090 Arabidopsis lyrata
AL7G11420 Arabidopsis lyrata
Aqoxy3G04038 Aquilegia oxysepala
Aqoxy6G00411 Aquilegia oxysepala
AT1G55610 Arabidopsis thaliana
AT2G01950 Arabidopsis thaliana
AT3G13380 Arabidopsis thaliana
AT4G39400 Arabidopsis thaliana
ATR0598G131 Amborella trichopoda
ATR0684G145 Amborella trichopoda
ATR1120G023 Amborella trichopoda
ATR1120G114 Amborella trichopoda
Atru.chr11.988 Acer truncatum
Atru.chr2.3907 Acer truncatum
Atru.chr4.748 Acer truncatum
Atru.chr4.749 Acer truncatum
AUR62003502 Chenopodium quinoa
AUR62003647 Chenopodium quinoa
AUR62012211 Chenopodium quinoa
AUR62017810 Chenopodium quinoa
AUR62017957 Chenopodium quinoa
AUR62022844 Chenopodium quinoa
BcaB03g12286 Brassica carinata
BcaB04g16940 Brassica carinata
BcaB06g25459 Brassica carinata
BcaB08g34437 Brassica carinata
BcaC01g00289 Brassica carinata
BcaC01g01544 Brassica carinata
BcaC05g29184 Brassica carinata
BcaC06g31257 Brassica carinata
BcaC06g34092 Brassica carinata
BcaC09g48304 Brassica carinata
BcaNung01262 Brassica carinata
BcaNung02339 Brassica carinata
BcaNung05431 Brassica carinata
BolC1t00054H Brassica oleracea
BolC1t05115H Brassica oleracea
BolC1t05116H Brassica oleracea
BolC3t20040H Brassica oleracea
BolC3t21601H Brassica oleracea
BolC5t34119H Brassica oleracea
BolC7t43796H Brassica oleracea
BolC7t46731H Brassica oleracea
BraA01t00044Z Brassica rapa
BraA05t22421Z Brassica rapa
BraA06t27265Z Brassica rapa
BraA06t27722Z Brassica rapa
BraA08t32100Z Brassica rapa
BraA08t34315Z Brassica rapa
C01p00510 Brassica napus
C01p51710 Brassica napus
C03p77850 Brassica napus
C03p92960 Brassica napus
C05p54520 Brassica napus
C07p32820 Brassica napus
C07p63210 Brassica napus
CAN.G458.16 Capsicum annuum
CAN.G623.80 Capsicum annuum
CAN.G860.7 Capsicum annuum
CANSAT01G1663 Cannabis sativa
CANSAT11G2196 Cannabis sativa
CANSAT78G1775 Cannabis sativa
CARHR045310 Cardamine hirsuta
CARHR087990 Cardamine hirsuta
CARHR144560 Cardamine hirsuta
CARHR247310 Cardamine hirsuta
Carub.0001s4413 Capsella rubella
Carub.0003s1275 Capsella rubella
Carub.0005s0097 Capsella rubella
Carub.0007s0132 Capsella rubella
Ca_14124_v3 Cicer arietinum L.
Ca_16902_v3 Cicer arietinum L.
Ca_18196_v3 Cicer arietinum L.
Cc05_g15800 Coffea canephora
Cc07_g16580 Coffea canephora
Cc11_g05620 Coffea canephora
CDE02G3463 Ceratophyllum demersum
CDE05G1400 Ceratophyllum demersum
CDE06G1427 Ceratophyllum demersum
CDE07G2067 Ceratophyllum demersum
Cfa002779 Carpinus fangiana
Cfa015080 Carpinus fangiana
Cfa016969 Carpinus fangiana
Ciclev10004191m.g Citrus clementina
Ciclev10007268m.g Citrus clementina
Ciclev10024737m.g Citrus clementina
CiPaw.03G132300 Carya illinoinensis
CiPaw.04G089500 Carya illinoinensis
CiPaw.05G159700 Carya illinoinensis
CiPaw.06G057900 Carya illinoinensis
ClCG01G006820 Citrullus lanatus
ClCG01G015910 Citrullus lanatus
COL.COLO4_03657 Corchorus olitorius
COL.COLO4_07797 Corchorus olitorius
COL.COLO4_17518 Corchorus olitorius
COL.COLO4_27564 Corchorus olitorius
Cpa.g.sc12.56 Carica papaya
Cpa.g.sc2.117 Carica papaya
Cpa.g.sc72.20 Carica papaya
CsaV3_5G017160 Cucumis sativus L.
CsaV3_6G042190 Cucumis sativus L.
CSS0006018 Camellia sinensis var. sinensis
CSS0013796 Camellia sinensis var. sinensis
CSS0026323 Camellia sinensis var. sinensis
CSS0030779 Camellia sinensis var. sinensis
CSS0049068 Camellia sinensis var. sinensis
DCAR_001384 Daucus carota
DCAR_013753 Daucus carota
DCAR_023534 Daucus carota
Dinv04770 Davidia involucrata
Dinv07308 Davidia involucrata
Dinv19462 Davidia involucrata
Dinv19636 Davidia involucrata
Dinv20492 Davidia involucrata
Dinv20550 Davidia involucrata
Dinv42530 Davidia involucrata
Duzib147G1056 Durio zibethinus
Duzib187G1120 Durio zibethinus
Duzib251G0075 Durio zibethinus
Duzib264G0801 Durio zibethinus
Duzib268G1864 Durio zibethinus
ECA236G3249 Erigeron canadensis
ECA238G0770 Erigeron canadensis
ECA248G1564 Erigeron canadensis
EL10Ac2g04792 Beta vulgaris
EL10Ac6g15221 Beta vulgaris
EL10Ac6g15373 Beta vulgaris
Eucgr.B02648 Eucalyptus grandis
Eucgr.F01980 Eucalyptus grandis
Eucgr.F03642 Eucalyptus grandis
Eucgr.G02065 Eucalyptus grandis
Eucgr.I00302 Eucalyptus grandis
Eucgr.I00303 Eucalyptus grandis
FAN04G1395 Fragaria x ananassa
FAN08G3000 Fragaria x ananassa
FAN11G2017 Fragaria x ananassa
FAN13G1577 Fragaria x ananassa
FAN16G1562 Fragaria x ananassa
FAN18G0213 Fragaria x ananassa
FAN19G2980 Fragaria x ananassa
FAN21G0201 Fragaria x ananassa
FAN23G1529 Fragaria x ananassa
FAN25G3853 Fragaria x ananassa
FAN26G1281 Fragaria x ananassa
FAN28G0757 Fragaria x ananassa
FvH4_1g23130 Fragaria vesca
FvH4_3g41420 Fragaria vesca
FvH4_5g27210 Fragaria vesca
Glyma.04G115700 Glycine max
Glyma.04G218300 Glycine max
Glyma.05G136900 Glycine max
Glyma.06G147600 Glycine max
Glyma.06G320600 Glycine max
Glyma.08G092200 Glycine max
Gohir.A01G145100 Gossypium hirsutum
Gohir.A02G136300 Gossypium hirsutum
Gohir.A04G000900 Gossypium hirsutum
Gohir.A11G054100 Gossypium hirsutum
Gohir.A11G224700 Gossypium hirsutum
Gohir.D01G135200 Gossypium hirsutum
Gohir.D03G047100 Gossypium hirsutum
Gohir.D05G388700 Gossypium hirsutum
Gohir.D11G057600 Gossypium hirsutum
Gohir.D11G227300 Gossypium hirsutum
Gorai.002G149600 Gossypium raimondii
Gorai.002G171000 Gossypium raimondii
Gorai.003G048200 Gossypium raimondii
Gorai.007G062800 Gossypium raimondii
Gorai.009G455100 Gossypium raimondii
GSVIVG01011586001 Vitis vinifera
GSVIVG01014856001 Vitis vinifera
GSVIVG01022261001 Vitis vinifera
HanXRQChr01g0019791 Helianthus annuus
HanXRQChr02g0058851 Helianthus annuus
HanXRQChr11g0334811 Helianthus annuus
HanXRQChr14g0446031 Helianthus annuus
HanXRQChr15g0471531 Helianthus annuus
Haze_09923 Corylus avellana
Haze_10800 Corylus avellana
Haze_25077 Corylus avellana
Hma1.2p1_0933F.1_g238490 Hydrangea macrophylla
Hma1.2p1_1525F.1_g288835 Hydrangea macrophylla
HPP92_008675 Vanilla planifolia
HPP92_008687 Vanilla planifolia
HPP92_008688 Vanilla planifolia
HPP92_016705 Vanilla planifolia
HPP92_022924 Vanilla planifolia
HPP92_022926 Vanilla planifolia
HPP92_022937 Vanilla planifolia
HPP92_022947 Vanilla planifolia
HPP92_023773 Vanilla planifolia
HPP92_023774 Vanilla planifolia
HPP92_023775 Vanilla planifolia
Lalb_Chr07g0184701 Lupinus albus
Lalb_Chr07g0187981 Lupinus albus
Lalb_Chr11g0068131 Lupinus albus
Lalb_Chr12g0209281 Lupinus albus
Lalb_Chr13g0296281 Lupinus albus
Lalb_Chr15g0079861 Lupinus albus
Lalb_Chr23g0272401 Lupinus albus
Lj1g0027179 Lotus japonicus
Lj2A568T47 Lonicera japonica
Lj2C568T3 Lonicera japonica
Lj3g0006784 Lotus japonicus
Lj4g0003396 Lotus japonicus
Lj4P862T5 Lonicera japonica
Lj6P730T21 Lonicera japonica
Lj8C184T8 Lonicera japonica
Lsat_1_v5_gn_1_88201 Lactuca sativa
Lsat_1_v5_gn_2_67280 Lactuca sativa
Lsat_1_v5_gn_4_138061 Lactuca sativa
Lsat_1_v5_gn_7_115941 Lactuca sativa
Manes.01G007700 Manihot esculenta
Manes.05G203800 Manihot esculenta
Manes.12G144800 Manihot esculenta
Manes.13G026050 Manihot esculenta
Manes.13G086700 Manihot esculenta
Manes.15G139302 Manihot esculenta
Manes.17G090300 Manihot esculenta
MBI01_g34164_MAGBIO Magnolia biondii
MBI04_g08944_MAGBIO Magnolia biondii
MBI13_g21677_MAGBIO Magnolia biondii
MBI14_g10259_MAGBIO Magnolia biondii
MBI15_g32227_MAGBIO Magnolia biondii
MBI15_g32228_MAGBIO Magnolia biondii
MBI15_g36011_MAGBIO Magnolia biondii
MBI15_g47428_MAGBIO Magnolia biondii
MD01G1014200 Malus domestica
MD03G1044500 Malus domestica
MD06G1115800 Malus domestica
MD06G1116100 Malus domestica
MD11G1047400 Malus domestica
MD13G1014800 Malus domestica
MD15G1336800 Malus domestica
MD16G1012100 Malus domestica
Medtr1g097290 Medicago truncatula
Medtr2g018145 Medicago truncatula
Medtr3g008850 Medicago truncatula
Medtr3g009400 Medicago truncatula
Medtr3g095100 Medicago truncatula
Medtr3g117910 Medicago truncatula
Medtr4g057260 Medicago truncatula
Medtr8g020640 Medicago truncatula
MELO3C005236.2 Cucumis melo
MELO3C007457.2 Cucumis melo
Migut.E00541 Erythranthe guttata
Migut.H02451 Erythranthe guttata
Migut.J00808 Erythranthe guttata
Migut.L00060 Erythranthe guttata
Migut.M01576 Erythranthe guttata
MSTRG.15758 Avicennia marina
MSTRG.16128 Avicennia marina
MSTRG.23304 Avicennia marina
MSTRG.2522 Avicennia marina
Nitab4.5_0000175g0250 Nicotiana tabacum
Nitab4.5_0000184g0090 Nicotiana tabacum
Nitab4.5_0000294g0170 Nicotiana tabacum
Nitab4.5_0001822g0020 Nicotiana tabacum
Nitab4.5_0005374g0010 Nicotiana tabacum
Nitab4.5_0010933g0010 Nicotiana tabacum
Nn1g06001 Nelumbo nucifera
Nn1g07612 Nelumbo nucifera
Nn4g24579 Nelumbo nucifera
Nn5g28822 Nelumbo nucifera
Oeu001974.1 Olea europaea
Oeu015276.1 Olea europaea
Oeu028358.1 Olea europaea
Oeu044090.1 Olea europaea
Oeu063370.1 Olea europaea
Os01g0718300 Oryza sativa ssp. japonica
Os08g0342300 Oryza sativa ssp. japonica
Os09g0293500 Oryza sativa ssp. japonica
Os10g0114400 Oryza sativa ssp. japonica
Peaxi162Scf00025g00006 Petunia axillaris
Peaxi162Scf00025g00342 Petunia axillaris
Peaxi162Scf00232g00083 Petunia axillaris
Peaxi162Scf00603g00212 Petunia axillaris
PGR004G2819 Punica granatum
PGR031G3536 Punica granatum
PGR083G1088 Punica granatum
PGR142G3188 Punica granatum
PGSC0003DMG400019698 Solanum tuberosum
PGSC0003DMG400022139 Solanum tuberosum
PGSC0003DMG400029442 Solanum tuberosum
Phvul.002G184800 Phaseolus vulgaris
Phvul.005G005900 Phaseolus vulgaris
Phvul.009G138532 Phaseolus vulgaris
Potri.001G472900 Populus trichocarpa
Potri.005G086500 Populus trichocarpa
Potri.007G078100 Populus trichocarpa
Potri.008G140500 Populus trichocarpa
Potri.010G101100 Populus trichocarpa
Potri.011G169600 Populus trichocarpa
Prupe.1G338800 Prunus persica
Prupe.6G036400 Prunus persica
Prupe.6G168100 Prunus persica
Psat5g231080 Pisum sativum
Psat7g085640 Pisum sativum
PSO063G5913 Papaver somniferum
PSO170G2374 Papaver somniferum
PSO541G1895 Papaver somniferum
PSO541G4361 Papaver somniferum
PSO675G3268 Papaver somniferum
PSO675G7450 Papaver somniferum
PSO700G0047 Papaver somniferum
PSO782G2727 Papaver somniferum
QL03p039295 Quercus lobata
QL06p031490 Quercus lobata
QL08p000343 Quercus lobata
RcHm_v2.0_Chr2g0117851 Rosa chinensis
RcHm_v2.0_Chr5g0074371 Rosa chinensis
RcHm_v2.0_Chr5g0074401 Rosa chinensis
RcHm_v2.0_Chr7g0218311 Rosa chinensis
Rhsim06G0235800 Rhododendron simsii
Rhsim08G0005000 Rhododendron simsii
Rhsim09G0084500 Rhododendron simsii
Sabra07G0065700 Salix brachista
Sabra08G0106500 Salix brachista
Sabra10G0073700 Salix brachista
Sabra11G0137400 Salix brachista
Sabra16G0321100 Salix brachista
SalBow2G0130 Salvia bowleyana
SalBow6G0454 Salvia bowleyana
SalBow6G4507 Salvia bowleyana
SalBow8G1359 Salvia bowleyana
Sc07g0001590 Simmondsia chinensis
Sc22g0004500 Simmondsia chinensis
Sed0009516 Sechium edule
Sed0019475 Sechium edule
Sed0023250 Sechium edule
SEGI_05258 Sequoiadendron giganteum
SEGI_10882 Sequoiadendron giganteum
SEGI_17846 Sequoiadendron giganteum
SEGI_34655 Sequoiadendron giganteum
SGA_v2.0_scaffold23G10090 Striga asiatica
SGA_v2.0_scaffold2G01278 Striga asiatica
SGA_v2.0_scaffold51G18761 Striga asiatica
SGA_v2.0_scaffold7G03556 Striga asiatica
SHI21982 Sapria himalayana
Solyc01g102870.3 Solanum lycopersicum
Solyc04g008430.1 Solanum lycopersicum
Solyc04g051510.1 Solanum lycopersicum
Solyc07g066230.4 Solanum lycopersicum
Sopen01g045270 Solanum pennellii
Sopen04g003580 Solanum pennellii
Sopen04g022890 Solanum pennellii
Sopen07g034410 Solanum pennellii
Sp1g41230 Schrenkiella parvula
Sp2g13390 Schrenkiella parvula
Sp3g11570 Schrenkiella parvula
Sp7g36460 Schrenkiella parvula
TAR371G0701 Trochodendron aralioides
TAR381G0313 Trochodendron aralioides
TAR381G0723 Trochodendron aralioides
TAR625G0241 Trochodendron aralioides
TAR627G0489 Trochodendron aralioides
TAR629G1106 Trochodendron aralioides
THA.LOC104805103 Tarenaya hassleriana
THA.LOC104807729 Tarenaya hassleriana
THA.LOC104815676 Tarenaya hassleriana
THA.LOC104824835 Tarenaya hassleriana
Thecc.01G116200 Theobroma cacao
Thecc.02G302100 Theobroma cacao
Thecc.07G000600 Theobroma cacao
Thecc.07G122100 Theobroma cacao
Thecc.07G122600 Theobroma cacao
Thecc.07G123000 Theobroma cacao
Thecc.07G123100 Theobroma cacao
Thhalv10003548m.g Eutrema salsugineum
Thhalv10011192m.g Eutrema salsugineum
Thhalv10019932m.g Eutrema salsugineum
Thhalv10024249m.g Eutrema salsugineum
TPR.G11910 Trifolium pratense
TPR.G22675 Trifolium pratense
TWI38G0796 Tripterygium wilfordii
TWI39G1093 Tripterygium wilfordii
TWI74G1637 Tripterygium wilfordii
TWI79G0146 Tripterygium wilfordii
unitig_26.g10455 Utricularia gibba
vmacro11647 Vaccinium macrocarpon
VMungo0251G0561 Vigna mungo
VMungo1080G0660 Vigna mungo
VMungo1309G0487 Vigna mungo
Zm00001eb026010 Zea mays
Zm00001eb154730 Zea mays
Zm00001eb177520 Zea mays
Zm00001eb309030 Zea mays
Zm00001eb361520 Zea mays

User provided reference genes

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