Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p20190 Brassica napus
A09p32700 Brassica napus
A09p55440 Brassica napus
Aa31LG1G870 Aethionema arabicum
Aa31LG5G9730 Aethionema arabicum
Aa31LG6G8000 Aethionema arabicum
Aa31LG9G11930 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1066 Anthoceros agrestis
Actinidia03525 Actinidia chinensis
Actinidia14705 Actinidia chinensis
Actinidia18193 Actinidia chinensis
Actinidia29384 Actinidia chinensis
Actinidia29385 Actinidia chinensis
Ah.01g020030 Amaranthus hybridus
Ah.02g124900 Amaranthus hybridus
Ah.09g227550 Amaranthus hybridus
Ah.10g034480 Amaranthus hybridus
AL1G48090 Arabidopsis lyrata
AL4G18040 Arabidopsis lyrata
AL6G43850 Arabidopsis lyrata
Aqoxy4G00509 Aquilegia oxysepala
Aqoxy5G00837 Aquilegia oxysepala
Aqoxy5G01427 Aquilegia oxysepala
Aqoxy6G00897 Aquilegia oxysepala
Aqoxy7G01266 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1JP5NC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7QGM13 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D93XQM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EVFJ1T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JA6QTX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N0WRTC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VQR3VI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WC628Y Arachis hypogaea
AT1G33680 Arabidopsis thaliana
AT2G25970 Arabidopsis thaliana
AT4G10070 Arabidopsis thaliana
ATR0225G025 Amborella trichopoda
ATR0789G147 Amborella trichopoda
ATR1089G081 Amborella trichopoda
ATR1089G103 Amborella trichopoda
Atru.chr13.2486 Acer truncatum
Atru.chr7.1037 Acer truncatum
AUR62009168 Chenopodium quinoa
AUR62009169 Chenopodium quinoa
AUR62011045 Chenopodium quinoa
AUR62011422 Chenopodium quinoa
AUR62016638 Chenopodium quinoa
AUR62022055 Chenopodium quinoa
AUR62033422 Chenopodium quinoa
BcaB01g00629 Brassica carinata
BcaB01g00630 Brassica carinata
BcaB06g29611 Brassica carinata
BcaB07g32996 Brassica carinata
BcaB08g35234 Brassica carinata
BcaC02g08312 Brassica carinata
BcaC07g40845 Brassica carinata
BcaC08g43847 Brassica carinata
BolC4t27123H Brassica oleracea
BolC6t36380H Brassica oleracea
BolC8t51415H Brassica oleracea
BraA04t17598Z Brassica rapa
BraA09t38810Z Brassica rapa
BraA09t40946Z Brassica rapa
C04p55900 Brassica napus
C06p12290 Brassica napus
C08p38430 Brassica napus
CAN.G208.76 Capsicum annuum
CAN.G227.12 Capsicum annuum
CANSAT25G0392 Cannabis sativa
CANSAT25G1707 Cannabis sativa
CANSAT25G1997 Cannabis sativa
CARHR194380 Cardamine hirsuta
CARHR261080 Cardamine hirsuta
CARHR287340 Cardamine hirsuta
Carub.0004s0582 Capsella rubella
Carub.0006s2863 Capsella rubella
Ca_13178_v3 Cicer arietinum L.
Ca_13179_v3 Cicer arietinum L.
Ca_15868_v3 Cicer arietinum L.
Ca_24472_v3 Cicer arietinum L.
CBR_g24302 Chara braunii
Cc08_g10400 Coffea canephora
Cc10_g08730 Coffea canephora
CDE02G1588 Ceratophyllum demersum
CDE04G2080 Ceratophyllum demersum
CDE06G2332 Ceratophyllum demersum
CDE07G0800 Ceratophyllum demersum
CDE07G0803 Ceratophyllum demersum
CDE08G1264 Ceratophyllum demersum
Cfa008085 Carpinus fangiana
Cfa017941 Carpinus fangiana
Cfa017942 Carpinus fangiana
Ciclev10007663m.g Citrus clementina
Ciclev10018931m.g Citrus clementina
CiPaw.03G015500 Carya illinoinensis
CiPaw.04G009600 Carya illinoinensis
CiPaw.16G029500 Carya illinoinensis
CiPaw.16G029700 Carya illinoinensis
ClCG02G005660 Citrullus lanatus
ClCG08G001060 Citrullus lanatus
ClCG08G016950 Citrullus lanatus
COL.COLO4_07775 Corchorus olitorius
COL.COLO4_21036 Corchorus olitorius
COL.COLO4_21037 Corchorus olitorius
COL.COLO4_24569 Corchorus olitorius
Cpa.g.sc21.81 Carica papaya
Cpa.g.sc7.198 Carica papaya
Cpa.g.sc7.199 Carica papaya
Cre06.g250800 Chlamydomonas reinhardtii
CsaV3_2G025660 Cucumis sativus L.
CsaV3_5G039940 Cucumis sativus L.
CsaV3_7G008850 Cucumis sativus L.
CSS0000793 Camellia sinensis var. sinensis
CSS0001159 Camellia sinensis var. sinensis
CSS0005108 Camellia sinensis var. sinensis
CSS0007665 Camellia sinensis var. sinensis
CSS0022594 Camellia sinensis var. sinensis
CSS0029557 Camellia sinensis var. sinensis
CSS0045360 Camellia sinensis var. sinensis
CSS0046346 Camellia sinensis var. sinensis
CSS0047769 Camellia sinensis var. sinensis
DCAR_003086 Daucus carota
DCAR_004440 Daucus carota
DCAR_014073 Daucus carota
DCAR_015206 Daucus carota
Dinv02828 Davidia involucrata
Dinv11676 Davidia involucrata
Dinv16105 Davidia involucrata
Dinv22102 Davidia involucrata
Dinv23429 Davidia involucrata
Dinv25116 Davidia involucrata
Dinv27972 Davidia involucrata
Dinv42119 Davidia involucrata
Duzib116G0283 Durio zibethinus
Duzib150G1159 Durio zibethinus
Duzib168G0433 Durio zibethinus
Duzib268G0114 Durio zibethinus
ECA232G0117 Erigeron canadensis
ECA233G0783 Erigeron canadensis
ECA240G2406 Erigeron canadensis
ECA247G3095 Erigeron canadensis
EL10Ac2g03917 Beta vulgaris
EL10Ac8g18563 Beta vulgaris
EL10Ac9g21811 Beta vulgaris
EL10Ac9g21812 Beta vulgaris
EL10Ac9g21813 Beta vulgaris
EL10Ac9g21815 Beta vulgaris
EL10Ac9g21816 Beta vulgaris
Eucgr.C00625 Eucalyptus grandis
Eucgr.C03020 Eucalyptus grandis
Eucgr.I00053 Eucalyptus grandis
FAN03G0913 Fragaria x ananassa
FAN08G0682 Fragaria x ananassa
FAN15G1354 Fragaria x ananassa
FAN15G2006 Fragaria x ananassa
FAN15G3039 Fragaria x ananassa
FAN18G1121 Fragaria x ananassa
FAN20G0744 Fragaria x ananassa
FAN20G1854 Fragaria x ananassa
FAN20G1898 Fragaria x ananassa
FAN24G0735 Fragaria x ananassa
FAN24G3321 Fragaria x ananassa
FAN27G0129 Fragaria x ananassa
FAN27G0488 Fragaria x ananassa
FAN27G1512 Fragaria x ananassa
FvH4_2g06980 Fragaria vesca
FvH4_2g32110 Fragaria vesca
FvH4_2g35080 Fragaria vesca
Glyma.01G230700 Glycine max
Glyma.04G050500 Glycine max
Glyma.04G050550 Glycine max
Glyma.04G131600 Glycine max
Glyma.06G051200 Glycine max
Glyma.11G013900 Glycine max
Glyma.14G093200 Glycine max
Glyma.17G230300 Glycine max
Gohir.A05G043300 Gossypium hirsutum
Gohir.A05G253600 Gossypium hirsutum
Gohir.A05G324701 Gossypium hirsutum
Gohir.A06G088300 Gossypium hirsutum
Gohir.A13G115900 Gossypium hirsutum
Gohir.D05G045000 Gossypium hirsutum
Gohir.D05G255600 Gossypium hirsutum
Gohir.D06G088400 Gossypium hirsutum
Gohir.D13G119100 Gossypium hirsutum
Gorai.009G046100 Gossypium raimondii
Gorai.009G267000 Gossypium raimondii
Gorai.010G102100 Gossypium raimondii
Gorai.013G133600 Gossypium raimondii
GSVIVG01035354001 Vitis vinifera
GSVIVG01036378001 Vitis vinifera
HanXRQChr04g0102931 Helianthus annuus
HanXRQChr07g0189741 Helianthus annuus
HanXRQChr13g0410681 Helianthus annuus
HanXRQChr13g0410701 Helianthus annuus
Haze_13952 Corylus avellana
Haze_18206 Corylus avellana
Hma1.2p1_0238F.1_g099710 Hydrangea macrophylla
Hma1.2p1_0450F.1_g155610 Hydrangea macrophylla
Hma1.2p1_0468F.1_g158710 Hydrangea macrophylla
Hma1.2p1_0482F.1_g162650 Hydrangea macrophylla
Hma1.2p1_0482F.1_g162660 Hydrangea macrophylla
Hma1.2p1_0482F.1_g162670 Hydrangea macrophylla
Hma1.2p1_0482F.1_g162680 Hydrangea macrophylla
Hma1.2p1_1944F.1_g308600 Hydrangea macrophylla
Hma1.2p1_1944F.1_g308603 Hydrangea macrophylla
HPP92_002838 Vanilla planifolia
HPP92_003984 Vanilla planifolia
HPP92_009208 Vanilla planifolia
HPP92_020012 Vanilla planifolia
Hund00315 Selenicereus undatus
Hund06190 Selenicereus undatus
Hund09167 Selenicereus undatus
Lalb_Chr05g0211341 Lupinus albus
Lalb_Chr09g0320521 Lupinus albus
Lalb_Chr09g0320531 Lupinus albus
Lalb_Chr14g0367811 Lupinus albus
Lalb_Chr16g0376691 Lupinus albus
Lalb_Chr22g0356061 Lupinus albus
Lalb_Chr24g0399601 Lupinus albus
Lalb_Chr24g0399611 Lupinus albus
Lj1g0009867 Lotus japonicus
Lj1g0011088 Lotus japonicus
Lj1g0025904 Lotus japonicus
Lj5g0018193 Lotus japonicus
Lj7C280G0 Lonicera japonica
Lj7C421G5 Lonicera japonica
Lj8C550G1 Lonicera japonica
Lj9A698G56 Lonicera japonica
LjContig00222g0010511 Lotus japonicus
Lju3103C0G13 Lonicera japonica
Lsat_1_v5_gn_0_31960 Lactuca sativa
Lsat_1_v5_gn_1_25041 Lactuca sativa
Lsat_1_v5_gn_1_47781 Lactuca sativa
Lsat_1_v5_gn_2_134500 Lactuca sativa
Lsat_1_v5_gn_2_134520 Lactuca sativa
Lsat_1_v5_gn_2_24761 Lactuca sativa
Lsat_1_v5_gn_3_38280 Lactuca sativa
Lsat_1_v5_gn_4_77561 Lactuca sativa
Lsat_1_v5_gn_6_13221 Lactuca sativa
Lsat_1_v5_gn_7_72301 Lactuca sativa
Lsat_1_v5_gn_8_165180 Lactuca sativa
Lsat_1_v5_gn_9_104121 Lactuca sativa
Lsat_1_v5_gn_9_7741 Lactuca sativa
Manes.02G207700 Manihot esculenta
Manes.15G143716 Manihot esculenta
Manes.16G078600 Manihot esculenta
Manes.16G078700 Manihot esculenta
Manes.17G094800 Manihot esculenta
Mapoly0006s0255 Marchantia polymorpha
MBI01_g02268_MAGBIO Magnolia biondii
MBI04_g37934_MAGBIO Magnolia biondii
MBI05_g20003_MAGBIO Magnolia biondii
MBI06_g21946_MAGBIO Magnolia biondii
MBI16_g19908_MAGBIO Magnolia biondii
MCO03G399 Micromonas commoda
MCO07G771 Micromonas commoda
MCO09G482 Micromonas commoda
MD00G1050700 Malus domestica
MD08G1044200 Malus domestica
MD08G1108100 Malus domestica
MD10G1088600 Malus domestica
MD15G1061500 Malus domestica
MD15G1061600 Malus domestica
MD15G1088600 Malus domestica
MD15G1088800 Malus domestica
Medtr1g016760 Medicago truncatula
Medtr3g104270 Medicago truncatula
Medtr3g104280 Medicago truncatula
Medtr5g008420 Medicago truncatula
Medtr7g010340 Medicago truncatula
MELO3C010761.2 Cucumis melo
MELO3C018428.2 Cucumis melo
MELO3C022173.2 Cucumis melo
Migut.A00146 Erythranthe guttata
Migut.C01374 Erythranthe guttata
Migut.E01558 Erythranthe guttata
Nitab4.5_0000213g0200 Nicotiana tabacum
Nitab4.5_0000738g0120 Nicotiana tabacum
Nitab4.5_0001155g0030 Nicotiana tabacum
Nitab4.5_0001179g0110 Nicotiana tabacum
Nitab4.5_0001584g0060 Nicotiana tabacum
Nitab4.5_0009587g0010 Nicotiana tabacum
Nn4g25459 Nelumbo nucifera
Nn5g27279 Nelumbo nucifera
Nn8g38919 Nelumbo nucifera
Oeu013909.1 Olea europaea
Oeu018652.2 Olea europaea
Oeu028925.1 Olea europaea
Oeu029090.2 Olea europaea
Oeu029405.1 Olea europaea
Oeu036343.1 Olea europaea
Oeu037328.1 Olea europaea
Os02g0224300 Oryza sativa ssp. japonica
Os08g0110800 Oryza sativa ssp. japonica
Peaxi162Scf00003g00306 Petunia axillaris
Peaxi162Scf00064g01629 Petunia axillaris
Peaxi162Scf00078g00548 Petunia axillaris
Peaxi162Scf00136g00623 Petunia axillaris
PGR031G2437 Punica granatum
PGR044G0673 Punica granatum
PGR142G2332 Punica granatum
PGSC0003DMG400002210 Solanum tuberosum
PGSC0003DMG400011914 Solanum tuberosum
PGSC0003DMG400029301 Solanum tuberosum
Phvul.002G036300 Phaseolus vulgaris
Phvul.009G076600 Phaseolus vulgaris
Phvul.009G076800 Phaseolus vulgaris
Potri.006G231800 Populus trichocarpa
Potri.013G099800 Populus trichocarpa
Potri.018G055300 Populus trichocarpa
Potri.019G072500 Populus trichocarpa
Pp3c11_17830 Physcomitrium patens
Pp3c7_11410 Physcomitrium patens
PRCOL_00000437 Prasinoderma coloniale
PRCOL_00001557 Prasinoderma coloniale
Prupe.1G414200 Prunus persica
Prupe.1G442700 Prunus persica
Prupe.8G115800 Prunus persica
Psat0ss1279g0040 Pisum sativum
Psat1g132160 Pisum sativum
Psat2g178400 Pisum sativum
Psat2g187240 Pisum sativum
Psat5g163520 Pisum sativum
Psat5g250440 Pisum sativum
Psat6g019480 Pisum sativum
Psat7g204520 Pisum sativum
Psat7g248520 Pisum sativum
PSO017G5759 Papaver somniferum
PSO063G2194 Papaver somniferum
PSO135G0737 Papaver somniferum
PSO170G5444 Papaver somniferum
PSO210G0021 Papaver somniferum
PSO210G5804 Papaver somniferum
PSO832G3656 Papaver somniferum
QL02p001442 Quercus lobata
QL09p002051 Quercus lobata
QL09p002054 Quercus lobata
QL11p038602 Quercus lobata
QL11p052290 Quercus lobata
QL11p052292 Quercus lobata
QL11p052357 Quercus lobata
RcHm_v2.0_Chr6g0259341 Rosa chinensis
RcHm_v2.0_Chr6g0306891 Rosa chinensis
RcHm_v2.0_Chr6g0310631 Rosa chinensis
Rhsim01G0105500 Rhododendron simsii
Rhsim08G0115800 Rhododendron simsii
Rhsim11G0045600 Rhododendron simsii
Sabra06G0179800 Salix brachista
Sabra13G0085600 Salix brachista
Sabra18G0049800 Salix brachista
Sabra19G0083900 Salix brachista
SalBow7G1995 Salvia bowleyana
Sc08g0000160 Simmondsia chinensis
Sc09g0009730 Simmondsia chinensis
Sc26g0002200 Simmondsia chinensis
Sed0000409 Sechium edule
Sed0008630 Sechium edule
Sed0023582 Sechium edule
Sed0026795 Sechium edule
Sed0027567 Sechium edule
SEGI_01022 Sequoiadendron giganteum
SEGI_30547 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32607 Striga asiatica
SGA_v2.0_scaffold187G40246 Striga asiatica
SGA_v2.0_scaffold24G10640 Striga asiatica
SGA_v2.0_scaffold88G27221 Striga asiatica
SHI16720 Sapria himalayana
SMO364G0321 Selaginella moellendorffii
Solyc08g065630.3 Solanum lycopersicum
Solyc11g040370.2 Solanum lycopersicum
Solyc12g095960.3 Solanum lycopersicum
Sopen08g019330 Solanum pennellii
Sopen11g018360 Solanum pennellii
Sopen12g031850 Solanum pennellii
Sp1g29050 Schrenkiella parvula
Sp4g05870 Schrenkiella parvula
TAR376G0996 Trochodendron aralioides
TAR381G0091 Trochodendron aralioides
TAR383G0280 Trochodendron aralioides
TAR624G1164 Trochodendron aralioides
TAR624G1247 Trochodendron aralioides
TAR626G0821 Trochodendron aralioides
TAR628G0559 Trochodendron aralioides
TAR633G1806 Trochodendron aralioides
THA.LOC104804517 Tarenaya hassleriana
THA.LOC104815830 Tarenaya hassleriana
THA.LOC104818574 Tarenaya hassleriana
Thecc.08G177400 Theobroma cacao
Thecc.09G052100 Theobroma cacao
Thecc.09G189000 Theobroma cacao
Thhalv10001945m.g Eutrema salsugineum
Thhalv10006898m.g Eutrema salsugineum
TPR.G13013 Trifolium pratense
TPR.G3592 Trifolium pratense
TPR.G38046 Trifolium pratense
TWI12G1153 Tripterygium wilfordii
TWI32G0683 Tripterygium wilfordii
TWI34G1891 Tripterygium wilfordii
TWI75G0063 Tripterygium wilfordii
TWI75G1723 Tripterygium wilfordii
TWI79G1009 Tripterygium wilfordii
unitig_749.g13825 Utricularia gibba
unitig_749.g13826 Utricularia gibba
vmacro00154 Vaccinium macrocarpon
vmacro00155 Vaccinium macrocarpon
vmacro17838 Vaccinium macrocarpon
vmacro19479 Vaccinium macrocarpon
VMungo1215G2872 Vigna mungo
VMungo1309G2260 Vigna mungo
VMungo1309G3077 Vigna mungo
Zm00001eb077480 Zea mays
Zm00001eb174080 Zea mays
Zm00001eb197270 Zea mays
Zm00001eb205070 Zea mays
Zm00001eb239890 Zea mays
Zm00001eb260490 Zea mays
Zm00001eb270600 Zea mays
Zm00001eb285620 Zea mays
Zm00001eb306740 Zea mays
Zm00001eb347700 Zea mays
Zm00001eb362910 Zea mays
Zm00001eb363030 Zea mays
Zm00001eb365430 Zea mays
Zm00001eb393190 Zea mays

User provided reference genes

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