Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p04860 Brassica napus
A03p45060 Brassica napus
A03p61980 Brassica napus
A04p18370 Brassica napus
A07p05970 Brassica napus
A07p30570 Brassica napus
A07p37980 Brassica napus
A08p17620 Brassica napus
Aa31LG4G8800 Aethionema arabicum
Aa31LG5G16800 Aethionema arabicum
Aa31LG6G8350 Aethionema arabicum
Aa31LG8G12360 Aethionema arabicum
Aa31sc568G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5585 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1631 Anthoceros agrestis
Actinidia00253 Actinidia chinensis
Actinidia10284 Actinidia chinensis
Actinidia12204 Actinidia chinensis
Actinidia28068 Actinidia chinensis
Actinidia29567 Actinidia chinensis
Actinidia33170 Actinidia chinensis
Actinidia33363 Actinidia chinensis
Actinidia38972 Actinidia chinensis
Ah.00g000080 Amaranthus hybridus
AL1G48710 Arabidopsis lyrata
AL2G31410 Arabidopsis lyrata
AL3G45570 Arabidopsis lyrata
AL3G45640 Arabidopsis lyrata
AL7G18140 Arabidopsis lyrata
Aqoxy6G00496 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3NFK48 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AVL2ZA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DH99G0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JE2YM9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SINK2Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YY2SNP Arachis hypogaea
AT1G34210 Arabidopsis thaliana
AT1G71830 Arabidopsis thaliana
AT2G13790 Arabidopsis thaliana
AT2G13800 Arabidopsis thaliana
AT4G33430 Arabidopsis thaliana
ATR0564G182 Amborella trichopoda
Atru.chr13.1888 Acer truncatum
Atru.chr4.397 Acer truncatum
Atru.chr6.1440 Acer truncatum
Atru.chr6.929 Acer truncatum
Atru.chr6.930 Acer truncatum
AUR62022322 Chenopodium quinoa
AUR62034381 Chenopodium quinoa
AUR62035434 Chenopodium quinoa
AUR62035720 Chenopodium quinoa
AUR62035721 Chenopodium quinoa
BcaB03g12797 Brassica carinata
BcaB03g15620 Brassica carinata
BcaB03g16216 Brassica carinata
BcaB06g28012 Brassica carinata
BcaB08g34545 Brassica carinata
BcaC01g00989 Brassica carinata
BcaC01g03115 Brassica carinata
BcaC06g35998 Brassica carinata
BcaC08g45754 Brassica carinata
BcaC08g46614 Brassica carinata
BcaC09g52155 Brassica carinata
BcaNung02172 Brassica carinata
BolC1t00505H Brassica oleracea
BolC3t17876H Brassica oleracea
BolC3t20953H Brassica oleracea
BolC6t38639H Brassica oleracea
BolC6t39642H Brassica oleracea
BolC7t41327H Brassica oleracea
BolC7t46409H Brassica oleracea
BraA01t00468Z Brassica rapa
BraA03t13641Z Brassica rapa
BraA03t15238Z Brassica rapa
BraA04t17448Z Brassica rapa
BraA07t28385Z Brassica rapa
BraA07t30692Z Brassica rapa
BraA07t31363Z Brassica rapa
BraA08t33713Z Brassica rapa
C01p05260 Brassica napus
C03p55930 Brassica napus
C03p86590 Brassica napus
C06p35330 Brassica napus
C06p45900 Brassica napus
C07p09150 Brassica napus
C07p59640 Brassica napus
CAN.G1010.18 Capsicum annuum
CAN.G523.93 Capsicum annuum
CANSAT11G0030 Cannabis sativa
CANSAT25G0659 Cannabis sativa
CARHR033720 Cardamine hirsuta
CARHR104720 Cardamine hirsuta
CARHR241480 Cardamine hirsuta
CARHR290920 Cardamine hirsuta
Carub.0001s3235 Capsella rubella
Carub.0002s1859 Capsella rubella
Carub.0003s2821 Capsella rubella
Carub.0007s0706 Capsella rubella
Ca_00119_v3 Cicer arietinum L.
Ca_10636_v3 Cicer arietinum L.
Cc02_g21820 Coffea canephora
Cc10_g06160 Coffea canephora
CDE02G0290 Ceratophyllum demersum
CDE05G2201 Ceratophyllum demersum
CDE08G0170 Ceratophyllum demersum
Cfa005583 Carpinus fangiana
Ciclev10000597m.g Citrus clementina
Ciclev10001146m.g Citrus clementina
Ciclev10027231m.g Citrus clementina
Ciclev10027485m.g Citrus clementina
CiPaw.05G038600 Carya illinoinensis
CiPaw.06G151400 Carya illinoinensis
CiPaw.06G151500 Carya illinoinensis
CiPaw.15G007200 Carya illinoinensis
CiPaw.16G006100 Carya illinoinensis
ClCG07G009300 Citrullus lanatus
ClCG08G003000 Citrullus lanatus
ClCG09G015090 Citrullus lanatus
ClCG10G009160 Citrullus lanatus
COL.COLO4_36810 Corchorus olitorius
Cpa.g.sc220.14 Carica papaya
Cpa.g.sc66.123 Carica papaya
CsaV3_4G004920 Cucumis sativus L.
CsaV3_4G009310 Cucumis sativus L.
CsaV3_6G002890 Cucumis sativus L.
CsaV3_7G006290 Cucumis sativus L.
CsaV3_UNG181390 Cucumis sativus L.
CSS0001850 Camellia sinensis var. sinensis
CSS0006497 Camellia sinensis var. sinensis
CSS0008187 Camellia sinensis var. sinensis
CSS0012410 Camellia sinensis var. sinensis
CSS0014352 Camellia sinensis var. sinensis
CSS0014414 Camellia sinensis var. sinensis
CSS0027912 Camellia sinensis var. sinensis
CSS0032967 Camellia sinensis var. sinensis
CSS0038835 Camellia sinensis var. sinensis
CSS0049084 Camellia sinensis var. sinensis
DCAR_005767 Daucus carota
DCAR_010079 Daucus carota
DCAR_010081 Daucus carota
DCAR_014255 Daucus carota
DCAR_021841 Daucus carota
Dinv13075 Davidia involucrata
Dinv19503 Davidia involucrata
Dinv24215 Davidia involucrata
Dinv42706 Davidia involucrata
Dinv44714 Davidia involucrata
Duzib116G0734 Durio zibethinus
Duzib132G0020 Durio zibethinus
Duzib132G0540 Durio zibethinus
Duzib132G1213 Durio zibethinus
Duzib177G1196 Durio zibethinus
Duzib211G0036 Durio zibethinus
Duzib248G0004 Durio zibethinus
ECA232G3462 Erigeron canadensis
ECA236G2493 Erigeron canadensis
ECA240G1389 Erigeron canadensis
ECA246G0303 Erigeron canadensis
ECA246G2729 Erigeron canadensis
ECA247G1603 Erigeron canadensis
ECA247G3708 Erigeron canadensis
EL10Ac1g01705 Beta vulgaris
EL10Ac1g02253 Beta vulgaris
Eucgr.A02280 Eucalyptus grandis
Eucgr.A02282 Eucalyptus grandis
Eucgr.A02283 Eucalyptus grandis
Eucgr.A02285 Eucalyptus grandis
Eucgr.F04151 Eucalyptus grandis
Eucgr.I02690 Eucalyptus grandis
FAN04G2657 Fragaria x ananassa
FAN08G1662 Fragaria x ananassa
FAN13G0275 Fragaria x ananassa
FAN15G3765 Fragaria x ananassa
FAN18G2693 Fragaria x ananassa
FAN20G2242 Fragaria x ananassa
FAN24G0844 Fragaria x ananassa
FAN27G2241 Fragaria x ananassa
FvH4_2g12500 Fragaria vesca
FvH4_5g30840 Fragaria vesca
Glyma.02G076100 Glycine max
Glyma.05G083066 Glycine max
Glyma.05G119500 Glycine max
Glyma.05G119600 Glycine max
Glyma.08G074500 Glycine max
Glyma.08G180800 Glycine max
Glyma.10G218800 Glycine max
Glyma.15G051600 Glycine max
Glyma.20G173000 Glycine max
Gohir.A03G171900 Gossypium hirsutum
Gohir.A04G112500 Gossypium hirsutum
Gohir.A04G112600 Gossypium hirsutum
Gohir.A06G109300 Gossypium hirsutum
Gohir.A13G065801 Gossypium hirsutum
Gohir.D02G195200 Gossypium hirsutum
Gohir.D04G153700 Gossypium hirsutum
Gohir.D04G153800 Gossypium hirsutum
Gohir.D06G113500 Gossypium hirsutum
Gohir.D13G055900 Gossypium hirsutum
Gorai.005G218200 Gossypium raimondii
Gorai.010G129300 Gossypium raimondii
Gorai.012G140900 Gossypium raimondii
Gorai.012G141000 Gossypium raimondii
Gorai.013G063200 Gossypium raimondii
GSVIVG01001600001 Vitis vinifera
GSVIVG01013341001 Vitis vinifera
GSVIVG01022209001 Vitis vinifera
GSVIVG01029797001 Vitis vinifera
GSVIVG01029798001 Vitis vinifera
HanXRQChr03g0067011 Helianthus annuus
HanXRQChr05g0162121 Helianthus annuus
HanXRQChr10g0278781 Helianthus annuus
HanXRQChr11g0320441 Helianthus annuus
HanXRQChr13g0418331 Helianthus annuus
HanXRQChr17g0547751 Helianthus annuus
Haze_10757 Corylus avellana
Haze_17881 Corylus avellana
Hma1.2p1_0276F.1_g111250 Hydrangea macrophylla
Hma1.2p1_1088F.1_g255570 Hydrangea macrophylla
Hma1.2p1_1341F.1_g276920 Hydrangea macrophylla
HPP92_011237 Vanilla planifolia
HPP92_016805 Vanilla planifolia
HPP92_016819 Vanilla planifolia
HPP92_027694 Vanilla planifolia
Hund17518 Selenicereus undatus
Lalb_Chr02g0141701 Lupinus albus
Lalb_Chr06g0161891 Lupinus albus
Lalb_Chr07g0189481 Lupinus albus
Lalb_Chr15g0090511 Lupinus albus
Lalb_Chr18g0060621 Lupinus albus
Lalb_Chr21g0305661 Lupinus albus
Lj2g0024032 Lotus japonicus
Lj4C710T6 Lonicera japonica
Lj5C242G15 Lonicera japonica
Lj5g0008512 Lotus japonicus
Lj5g0016253 Lotus japonicus
Lj6A579T33 Lonicera japonica
Lj6A581T48 Lonicera japonica
Lj6A585T91 Lonicera japonica
Lj6g0001211 Lotus japonicus
Lj9C318G10 Lonicera japonica
Lsat_1_v5_gn_6_100781 Lactuca sativa
Lsat_1_v5_gn_7_79861 Lactuca sativa
Lsat_1_v5_gn_9_117581 Lactuca sativa
Lsat_1_v5_gn_9_117621 Lactuca sativa
Lsat_1_v5_gn_9_117641 Lactuca sativa
Lsat_1_v5_gn_9_42940 Lactuca sativa
Manes.02G187500 Manihot esculenta
Manes.03G182600 Manihot esculenta
Manes.04G061700 Manihot esculenta
Manes.08G074100 Manihot esculenta
Manes.12G141300 Manihot esculenta
Manes.15G024900 Manihot esculenta
Manes.18G097400 Manihot esculenta
Mapoly0068s0069 Marchantia polymorpha
Mapoly0111s0021 Marchantia polymorpha
Mapoly0560s0001 Marchantia polymorpha
MBI02_g13018_MAGBIO Magnolia biondii
MD08G1221700 Malus domestica
MD10G1043100 Malus domestica
MD15G1412700 Malus domestica
MD15G1413000 Malus domestica
MD15G1414000 Malus domestica
MD17G1003100 Malus domestica
Medtr1g097160 Medicago truncatula
Medtr2g008360 Medicago truncatula
Medtr2g008370 Medicago truncatula
Medtr2g008380 Medicago truncatula
Medtr2g008390 Medicago truncatula
Medtr2g008400 Medicago truncatula
MELO3C017569.2 Cucumis melo
MELO3C018663.2 Cucumis melo
MELO3C019027.2 Cucumis melo
MELO3C026152.2 Cucumis melo
Migut.B00633 Erythranthe guttata
Migut.C00175 Erythranthe guttata
Migut.N01009 Erythranthe guttata
Migut.N02924 Erythranthe guttata
MSTRG.22127 Avicennia marina
MSTRG.24481 Avicennia marina
MSTRG.5257 Avicennia marina
Nitab4.5_0000078g0120 Nicotiana tabacum
Nitab4.5_0000553g0140 Nicotiana tabacum
Nitab4.5_0001307g0100 Nicotiana tabacum
Nitab4.5_0002865g0140 Nicotiana tabacum
Nitab4.5_0005416g0010 Nicotiana tabacum
Nitab4.5_0005663g0010 Nicotiana tabacum
Nn1g05201 Nelumbo nucifera
Nn5g28930 Nelumbo nucifera
Oeu027229.1 Olea europaea
Oeu036735.1 Olea europaea
Oeu037189.1 Olea europaea
Oeu037195.1 Olea europaea
Oeu047377.1 Olea europaea
Oeu057397.3 Olea europaea
Os04g0457800 Oryza sativa ssp. japonica
Os08g0174700 Oryza sativa ssp. japonica
Os08g0176200 Oryza sativa ssp. japonica
Peaxi162Scf00001g00322 Petunia axillaris
Peaxi162Scf00003g03639 Petunia axillaris
Peaxi162Scf00267g01219 Petunia axillaris
PGR031G3447 Punica granatum
PGR042G0699 Punica granatum
PGR102G0261 Punica granatum
PGR142G2837 Punica granatum
PGSC0003DMG400012594 Solanum tuberosum
PGSC0003DMG400017690 Solanum tuberosum
PGSC0003DMG400027536 Solanum tuberosum
Phvul.002G206900 Phaseolus vulgaris
Phvul.002G207000 Phaseolus vulgaris
Phvul.004G086300 Phaseolus vulgaris
Phvul.006G208100 Phaseolus vulgaris
Phvul.007G086800 Phaseolus vulgaris
Potri.001G206700 Populus trichocarpa
Potri.003G023000 Populus trichocarpa
Potri.005G083300 Populus trichocarpa
Potri.007G082400 Populus trichocarpa
Potri.013G117200 Populus trichocarpa
Potri.019G087700 Populus trichocarpa
Pp3c12_23570 Physcomitrium patens
Pp3c3_14110 Physcomitrium patens
Pp3c3_36680 Physcomitrium patens
Pp3c8_3330 Physcomitrium patens
Prupe.1G558800 Prunus persica
Prupe.8G048700 Prunus persica
Psat1g218080 Pisum sativum
Psat1g218120 Pisum sativum
Psat1g218160 Pisum sativum
PSO210G2741 Papaver somniferum
PSO447G0313 Papaver somniferum
QL02p034871 Quercus lobata
QL11p019535 Quercus lobata
QL11p019552 Quercus lobata
RcHm_v2.0_Chr6g0272981 Rosa chinensis
RcHm_v2.0_Chr7g0225981 Rosa chinensis
Rhsim07G0198500 Rhododendron simsii
Rhsim10G0151700 Rhododendron simsii
Rhsim11G0134800 Rhododendron simsii
Rhsim11G0135200 Rhododendron simsii
Sabra01G0159800 Salix brachista
Sabra01G0160000 Salix brachista
Sabra03G0014500 Salix brachista
Sabra05G0068400 Salix brachista
Sabra13G0099300 Salix brachista
Sabra19G0098100 Salix brachista
Sabra19G0101600 Salix brachista
SalBow2G1565 Salvia bowleyana
SalBow5G3665 Salvia bowleyana
SalBow6G4099 Salvia bowleyana
SalBow6G6707 Salvia bowleyana
SalBow7G2933 Salvia bowleyana
Sc18g0003790 Simmondsia chinensis
Sc18g0003910 Simmondsia chinensis
Sc20g0003190 Simmondsia chinensis
Sed0011886 Sechium edule
Sed0013837 Sechium edule
Sed0014522 Sechium edule
Sed0015355 Sechium edule
Sed0020956 Sechium edule
Sed0026817 Sechium edule
SEGI_08682 Sequoiadendron giganteum
SEGI_16285 Sequoiadendron giganteum
SEGI_28379 Sequoiadendron giganteum
SGA_v2.0_scaffold145G36049 Striga asiatica
SGA_v2.0_scaffold21G09347 Striga asiatica
SGA_v2.0_scaffold45G17300 Striga asiatica
SGA_v2.0_scaffold48G18024 Striga asiatica
SGA_v2.0_scaffold83G26281 Striga asiatica
SHI09178 Sapria himalayana
SMO172G0128 Selaginella moellendorffii
SMO347G0149 Selaginella moellendorffii
SMO347G0220 Selaginella moellendorffii
Solyc01g104970.3 Solanum lycopersicum
Solyc04g072570.3 Solanum lycopersicum
Solyc10g047140.2 Solanum lycopersicum
Sopen01g047490 Solanum pennellii
Sopen04g028770 Solanum pennellii
Sopen10g017310 Solanum pennellii
Sp1g29440 Schrenkiella parvula
Sp3g27100 Schrenkiella parvula
Sp5g26860 Schrenkiella parvula
Sp7g31130 Schrenkiella parvula
SpUn0020_0110 Schrenkiella parvula
TAR376G0656 Trochodendron aralioides
TAR381G0048 Trochodendron aralioides
TAR625G0343 Trochodendron aralioides
TAR628G1228 Trochodendron aralioides
THA.LOC104804408 Tarenaya hassleriana
THA.LOC104806776 Tarenaya hassleriana
THA.LOC104807159 Tarenaya hassleriana
THA.LOC104816172 Tarenaya hassleriana
Thecc.02G143000 Theobroma cacao
Thecc.08G198100 Theobroma cacao
Thhalv10007069m.g Eutrema salsugineum
Thhalv10019435m.g Eutrema salsugineum
Thhalv10024694m.g Eutrema salsugineum
TPR.G13605 Trifolium pratense
TPR.G13619 Trifolium pratense
TPR.G28060 Trifolium pratense
TWI14G0043 Tripterygium wilfordii
TWI14G0665 Tripterygium wilfordii
TWI14G1034 Tripterygium wilfordii
TWI14G1299 Tripterygium wilfordii
TWI23G0457 Tripterygium wilfordii
TWI23G1250 Tripterygium wilfordii
TWI32G0784 Tripterygium wilfordii
TWI59G1040 Tripterygium wilfordii
TWI60G1437 Tripterygium wilfordii
vmacro01811 Vaccinium macrocarpon
vmacro04779 Vaccinium macrocarpon
vmacro04780 Vaccinium macrocarpon
vmacro12910 Vaccinium macrocarpon
vmacro19914 Vaccinium macrocarpon
vmacro19916 Vaccinium macrocarpon
vmacro19917 Vaccinium macrocarpon
vmacro19918 Vaccinium macrocarpon
VMungo0251G1045 Vigna mungo
VMungo0251G1399 Vigna mungo
VMungo0464G0606 Vigna mungo
VMungo0540G1086 Vigna mungo
VMungo0720G1686 Vigna mungo
Zm00001eb172000 Zea mays
Zm00001eb182940 Zea mays
Zm00001eb244860 Zea mays
Zm00001eb414790 Zea mays
Zm00001eb423960 Zea mays

User provided reference genes

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