Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p66290 Brassica napus
A05p41520 Brassica napus
A10p18320 Brassica napus
Aa31LG1G13080 Aethionema arabicum
Aa31LG2G11400 Aethionema arabicum
Aa31LG5G16200 Aethionema arabicum
Aa31LG5G17040 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.344 Anthoceros agrestis
Actinidia01497 Actinidia chinensis
Actinidia02511 Actinidia chinensis
Actinidia11745 Actinidia chinensis
Actinidia14245 Actinidia chinensis
Actinidia16879 Actinidia chinensis
Actinidia26080 Actinidia chinensis
Actinidia35454 Actinidia chinensis
Actinidia37090 Actinidia chinensis
Actinidia37326 Actinidia chinensis
Ah.04g162220 Amaranthus hybridus
Ah.06g196220 Amaranthus hybridus
Ah.07g203930 Amaranthus hybridus
Ah.08g216020 Amaranthus hybridus
AL126U10050 Arabidopsis lyrata
AL1G66450 Arabidopsis lyrata
AL3G16560 Arabidopsis lyrata
AL3G17530 Arabidopsis lyrata
AL446U10020 Arabidopsis lyrata
AL6G33520 Arabidopsis lyrata
Aqoxy2G01346 Aquilegia oxysepala
Aqoxy2G02633 Aquilegia oxysepala
Aqoxy5G02718 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3469MM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.56RS5A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CVF7PE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CYW5KB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DE6P9C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EH9MEX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1RS3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G6F8T8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5WQFN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L7A1GN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T3J336 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TVH6B8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YKJ7BV Arachis hypogaea
AT1G56560 Arabidopsis thaliana
AT3G05820 Arabidopsis thaliana
AT3G06500 Arabidopsis thaliana
AT5G22510 Arabidopsis thaliana
ATR0693G190 Amborella trichopoda
ATR0820G049 Amborella trichopoda
Atru.chr12.980 Acer truncatum
Atru.chr2.237 Acer truncatum
Atru.chr3.3345 Acer truncatum
Atru.chr4.3109 Acer truncatum
Atru.chr6.89 Acer truncatum
Atru.chr6.92 Acer truncatum
AUR62000426 Chenopodium quinoa
AUR62002597 Chenopodium quinoa
AUR62006772 Chenopodium quinoa
AUR62009802 Chenopodium quinoa
AUR62030019 Chenopodium quinoa
AUR62034491 Chenopodium quinoa
AUR62039250 Chenopodium quinoa
AUR62043073 Chenopodium quinoa
AUR62043241 Chenopodium quinoa
BcaB03g14922 Brassica carinata
BcaB08g36425 Brassica carinata
BcaC02g10721 Brassica carinata
BcaC04g19583 Brassica carinata
BcaC06g31776 Brassica carinata
BcaC09g47853 Brassica carinata
BcaC09g47854 Brassica carinata
BcaNung06665 Brassica carinata
BolC1t05663H Brassica oleracea
BolC4t24091H Brassica oleracea
BolC5t34732H Brassica oleracea
BolC9t58276H Brassica oleracea
BraA01t04472Z Brassica rapa
BraA03t15684Z Brassica rapa
BraA05t22873Z Brassica rapa
BraA10t43912Z Brassica rapa
C04p27040 Brassica napus
C05p60720 Brassica napus
C09p54070 Brassica napus
CAN.G1076.42 Capsicum annuum
CAN.G534.4 Capsicum annuum
CAN.G644.12 Capsicum annuum
CANSAT54G0318 Cannabis sativa
CANSAT54G1582 Cannabis sativa
CANSAT56G1831 Cannabis sativa
CANSAT78G2176 Cannabis sativa
CARHR055010 Cardamine hirsuta
CARHR080270 Cardamine hirsuta
CARHR081030 Cardamine hirsuta
CARHR081040 Cardamine hirsuta
CARHR191030 Cardamine hirsuta
Carub.0002s0735 Capsella rubella
Carub.0003s0518 Capsella rubella
Carub.0003s0596 Capsella rubella
Carub.0006s2024 Capsella rubella
Ca_09292_v3 Cicer arietinum L.
Ca_17682_v3 Cicer arietinum L.
Ca_21402_v3 Cicer arietinum L.
Ca_21417_v3 Cicer arietinum L.
Ca_29606_v3 Cicer arietinum L.
Cc00_g21200 Coffea canephora
Cc01_g09590 Coffea canephora
Cc02_g09920 Coffea canephora
Cc02_g35310 Coffea canephora
CDE02G4442 Ceratophyllum demersum
CDE08G0065 Ceratophyllum demersum
CDE08G1517 Ceratophyllum demersum
CDE12G0262 Ceratophyllum demersum
Cfa006716 Carpinus fangiana
Cfa010068 Carpinus fangiana
Cfa011247 Carpinus fangiana
Cfa015125 Carpinus fangiana
Cfa015686 Carpinus fangiana
Ciclev10000500m.g Citrus clementina
Ciclev10004474m.g Citrus clementina
Ciclev10028002m.g Citrus clementina
Ciclev10030925m.g Citrus clementina
CiPaw.01G133700 Carya illinoinensis
CiPaw.07G031500 Carya illinoinensis
CiPaw.13G037800 Carya illinoinensis
CiPaw.14G030000 Carya illinoinensis
CiPaw.14G102700 Carya illinoinensis
ClCG02G014770 Citrullus lanatus
ClCG05G006700 Citrullus lanatus
ClCG05G021680 Citrullus lanatus
COL.COLO4_04305 Corchorus olitorius
COL.COLO4_05524 Corchorus olitorius
COL.COLO4_05525 Corchorus olitorius
COL.COLO4_05526 Corchorus olitorius
COL.COLO4_19947 Corchorus olitorius
COL.COLO4_34561 Corchorus olitorius
Cpa.g.sc19.1 Carica papaya
Cpa.g.sc48.185 Carica papaya
Cpa.g.sc9.1 Carica papaya
CsaV3_2G007220 Cucumis sativus L.
CsaV3_3G015320 Cucumis sativus L.
CsaV3_5G035590 Cucumis sativus L.
CSS0022893 Camellia sinensis var. sinensis
CSS0025299 Camellia sinensis var. sinensis
CSS0025596 Camellia sinensis var. sinensis
CSS0027362 Camellia sinensis var. sinensis
CSS0034799 Camellia sinensis var. sinensis
CSS0040598 Camellia sinensis var. sinensis
DCAR_002523 Daucus carota
DCAR_005276 Daucus carota
DCAR_006155 Daucus carota
DCAR_022899 Daucus carota
DCAR_023638 Daucus carota
DCAR_029337 Daucus carota
Dinv06786 Davidia involucrata
Dinv24479 Davidia involucrata
Dinv30913 Davidia involucrata
Dinv42580 Davidia involucrata
Dinv44250 Davidia involucrata
Duzib081G0002 Durio zibethinus
Duzib114G0959 Durio zibethinus
Duzib170G0639 Durio zibethinus
Duzib177G0933 Durio zibethinus
Duzib212G0324 Durio zibethinus
ECA233G3360 Erigeron canadensis
ECA233G5310 Erigeron canadensis
ECA233G5923 Erigeron canadensis
ECA246G2260 Erigeron canadensis
EL10Ac3g06297 Beta vulgaris
EL10Ac4g09501 Beta vulgaris
EL10Ac7g15784 Beta vulgaris
Eucgr.B03984 Eucalyptus grandis
Eucgr.G02704 Eucalyptus grandis
Eucgr.H03308 Eucalyptus grandis
Eucgr.J00457 Eucalyptus grandis
FAN02G3165 Fragaria x ananassa
FAN05G1487 Fragaria x ananassa
FAN07G0853 Fragaria x ananassa
FAN09G1483 Fragaria x ananassa
FAN10G3488 Fragaria x ananassa
FAN12G0312 Fragaria x ananassa
FAN14G3393 Fragaria x ananassa
FvH4_3g24390 Fragaria vesca
FvH4_4g20740 Fragaria vesca
FvH4_6g07880 Fragaria vesca
Glyma.03G230400 Glycine max
Glyma.05G185500 Glycine max
Glyma.07G236000 Glycine max
Glyma.08G143500 Glycine max
Glyma.10G145600 Glycine max
Glyma.17G037400 Glycine max
Glyma.19G227300 Glycine max
Glyma.20G095200 Glycine max
Gohir.A01G130411 Gossypium hirsutum
Gohir.A05G395300 Gossypium hirsutum
Gohir.A08G204500 Gossypium hirsutum
Gohir.A09G094400 Gossypium hirsutum
Gohir.A10G175300 Gossypium hirsutum
Gohir.A11G274500 Gossypium hirsutum
Gohir.A13G113100 Gossypium hirsutum
Gohir.A13G176400 Gossypium hirsutum
Gohir.D01G119200 Gossypium hirsutum
Gohir.D04G019700 Gossypium hirsutum
Gohir.D08G221800 Gossypium hirsutum
Gohir.D09G094100 Gossypium hirsutum
Gohir.D10G182000 Gossypium hirsutum
Gohir.D11G285200 Gossypium hirsutum
Gohir.D13G116100 Gossypium hirsutum
Gohir.D13G182800 Gossypium hirsutum
Gorai.002G145500 Gossypium raimondii
Gorai.004G235500 Gossypium raimondii
Gorai.006G110700 Gossypium raimondii
Gorai.007G308100 Gossypium raimondii
Gorai.011G203600 Gossypium raimondii
Gorai.012G023500 Gossypium raimondii
Gorai.013G130600 Gossypium raimondii
Gorai.013G208200 Gossypium raimondii
GSVIVG01031267001 Vitis vinifera
GSVIVG01031374001 Vitis vinifera
GSVIVG01034754001 Vitis vinifera
GSVIVG01034944001 Vitis vinifera
HanXRQChr08g0235481 Helianthus annuus
HanXRQChr12g0368141 Helianthus annuus
HanXRQChr15g0478371 Helianthus annuus
HanXRQChr17g0544341 Helianthus annuus
Haze_00835 Corylus avellana
Haze_00838 Corylus avellana
Haze_02582 Corylus avellana
Haze_04045 Corylus avellana
Haze_23432 Corylus avellana
Hma1.2p1_0008F-1.1_g005410 Hydrangea macrophylla
Hma1.2p1_0052F.1_g030640 Hydrangea macrophylla
Hma1.2p1_0246F.1_g101680 Hydrangea macrophylla
Hma1.2p1_1096F.1_g256610 Hydrangea macrophylla
Hma1.2p1_1400F.1_g281010 Hydrangea macrophylla
HPP92_007821 Vanilla planifolia
HPP92_010599 Vanilla planifolia
Hund06771 Selenicereus undatus
Hund07302 Selenicereus undatus
Hund18734 Selenicereus undatus
Hund21857 Selenicereus undatus
Hund22605 Selenicereus undatus
Lalb_Chr04g0260381 Lupinus albus
Lalb_Chr12g0200761 Lupinus albus
Lalb_Chr13g0298741 Lupinus albus
Lalb_Chr21g0310161 Lupinus albus
Lalb_Chr24g0395201 Lupinus albus
Lj1g0009389 Lotus japonicus
Lj2A30T108 Lonicera japonica
Lj2A991G81 Lonicera japonica
Lj3A835T51 Lonicera japonica
Lj4g0017115 Lotus japonicus
Lj4g0025620 Lotus japonicus
Lj5A325G67 Lonicera japonica
Lj5g0007576 Lotus japonicus
Lju99C11G10 Lonicera japonica
Lsat_1_v5_gn_3_44661 Lactuca sativa
Lsat_1_v5_gn_6_39480 Lactuca sativa
Lsat_1_v5_gn_6_70500 Lactuca sativa
Lsat_1_v5_gn_8_24520 Lactuca sativa
Manes.03G208400 Manihot esculenta
Manes.04G006900 Manihot esculenta
Manes.07G088200 Manihot esculenta
Manes.08G109700 Manihot esculenta
Manes.09G178700 Manihot esculenta
Manes.10G057700 Manihot esculenta
Mapoly0007s0197 Marchantia polymorpha
MBI01_g33953_MAGBIO Magnolia biondii
MBI18_g27384_MAGBIO Magnolia biondii
MBI19_g03288_MAGBIO Magnolia biondii
MD00G1120100 Malus domestica
MD02G1255300 Malus domestica
MD04G1191300 Malus domestica
MD07G1066500 Malus domestica
MD07G1066700 Malus domestica
MD11G1159600 Malus domestica
MD13G1148300 Malus domestica
Medtr1g084610 Medicago truncatula
Medtr3g015100 Medicago truncatula
Medtr4g123030 Medicago truncatula
Medtr7g111890 Medicago truncatula
Medtr8g092170 Medicago truncatula
MELO3C004170.2 Cucumis melo
MELO3C006727.2 Cucumis melo
MELO3C012360.2 Cucumis melo
Migut.N00026 Erythranthe guttata
Migut.N00949 Erythranthe guttata
Migut.N02506 Erythranthe guttata
MSTRG.17719 Avicennia marina
MSTRG.21677 Avicennia marina
MSTRG.21755 Avicennia marina
MSTRG.5151 Avicennia marina
Nitab4.5_0000962g0090 Nicotiana tabacum
Nitab4.5_0003044g0040 Nicotiana tabacum
Nitab4.5_0004070g0070 Nicotiana tabacum
Nitab4.5_0006735g0060 Nicotiana tabacum
Nitab4.5_0009861g0010 Nicotiana tabacum
Nitab4.5_0010832g0020 Nicotiana tabacum
Nn2g14060 Nelumbo nucifera
Nn3g21811 Nelumbo nucifera
Nn4g25458 Nelumbo nucifera
Nn6g35003 Nelumbo nucifera
Oeu000071.1 Olea europaea
Oeu014222.1 Olea europaea
Oeu050198.1 Olea europaea
Oeu061790.2 Olea europaea
Os01g0332100 Oryza sativa ssp. japonica
Os02g0529400 Oryza sativa ssp. japonica
Os03g0314800 Oryza sativa ssp. japonica
Os04g0409900 Oryza sativa ssp. japonica
Peaxi162Scf00228g00913 Petunia axillaris
Peaxi162Scf00244g01416 Petunia axillaris
Peaxi162Scf00357g00729 Petunia axillaris
Peaxi162Scf01284g00020 Petunia axillaris
PGR031G0212 Punica granatum
PGR031G2105 Punica granatum
PGR119G0390 Punica granatum
PGR142G2079 Punica granatum
PGSC0003DMG400002756 Solanum tuberosum
PGSC0003DMG400013088 Solanum tuberosum
PGSC0003DMG400019494 Solanum tuberosum
PGSC0003DMG400026530 Solanum tuberosum
Phvul.001G224200 Phaseolus vulgaris
Phvul.002G266600 Phaseolus vulgaris
Phvul.003G118400 Phaseolus vulgaris
Phvul.007G203100 Phaseolus vulgaris
Potri.004G186500 Populus trichocarpa
Potri.005G010800 Populus trichocarpa
Potri.008G024100 Populus trichocarpa
Potri.008G101500 Populus trichocarpa
Potri.010G236100 Populus trichocarpa
Potri.013G006600 Populus trichocarpa
Pp3c16_15060 Physcomitrium patens
Pp3c17_13250 Physcomitrium patens
Pp3c6_27130 Physcomitrium patens
Prupe.1G111800 Prunus persica
Prupe.2G083900 Prunus persica
Prupe.6G122600 Prunus persica
Prupe.6G309800 Prunus persica
Psat0s1953g0240 Pisum sativum
Psat0s434g0080 Pisum sativum
Psat3g014160 Pisum sativum
Psat6g153400 Pisum sativum
Psat7g051280 Pisum sativum
PSO210G5209 Papaver somniferum
PSO384G2609 Papaver somniferum
PSO729G0219 Papaver somniferum
PSO761G0420 Papaver somniferum
QL01p013365 Quercus lobata
QL03p016884 Quercus lobata
QL04p042977 Quercus lobata
QL06p013214 Quercus lobata
RcHm_v2.0_Chr3g0457581 Rosa chinensis
RcHm_v2.0_Chr4g0426171 Rosa chinensis
RcHm_v2.0_Chr5g0043881 Rosa chinensis
Rhsim01G0206500 Rhododendron simsii
Rhsim02G0001900 Rhododendron simsii
Rhsim05G0129100 Rhododendron simsii
Rhsim11G0098300 Rhododendron simsii
Sabra04G0125700 Salix brachista
Sabra05G0019200 Salix brachista
Sabra08G0016200 Salix brachista
Sabra08G0076800 Salix brachista
Sabra10G0183200 Salix brachista
SalBow3G1543 Salvia bowleyana
SalBow5G0199 Salvia bowleyana
SalBow6G5256 Salvia bowleyana
SalBow7G4672 Salvia bowleyana
Sc06g0002230 Simmondsia chinensis
Sc06g0005700 Simmondsia chinensis
Sc12g0004290 Simmondsia chinensis
Sc16g0009180 Simmondsia chinensis
Sc16g0009190 Simmondsia chinensis
Sed0002709 Sechium edule
Sed0005862 Sechium edule
Sed0009598 Sechium edule
Sed0015142 Sechium edule
Sed0026404 Sechium edule
SEGI_04381 Sequoiadendron giganteum
SEGI_40462 Sequoiadendron giganteum
SGA_v2.0_scaffold102G29940 Striga asiatica
SGA_v2.0_scaffold227G43225 Striga asiatica
SGA_v2.0_scaffold37G14587 Striga asiatica
SGA_v2.0_scaffold4G01978 Striga asiatica
SHI21294 Sapria himalayana
SHI24192 Sapria himalayana
SHI29423 Sapria himalayana
SMO141G0144 Selaginella moellendorffii
SMO165G0031 Selaginella moellendorffii
Solyc01g058010.3 Solanum lycopersicum
Solyc01g100810.3 Solanum lycopersicum
Solyc10g061980.1 Solanum lycopersicum
Solyc11g007270.3 Solanum lycopersicum
Solyc11g067050.4 Solanum lycopersicum
Sopen01g023510 Solanum pennellii
Sopen01g044310 Solanum pennellii
Sopen11g003160 Solanum pennellii
Sopen11g026760 Solanum pennellii
Sp2g06210 Schrenkiella parvula
Sp3g04680 Schrenkiella parvula
Sp3g05450 Schrenkiella parvula
Sp6g22750 Schrenkiella parvula
TAR362G0824 Trochodendron aralioides
TAR365G0826 Trochodendron aralioides
TAR636G3476 Trochodendron aralioides
THA.LOC104810901 Tarenaya hassleriana
THA.LOC104821743 Tarenaya hassleriana
THA.LOC104823715 Tarenaya hassleriana
Thecc.01G339900 Theobroma cacao
Thecc.04G307100 Theobroma cacao
Thecc.05G325700 Theobroma cacao
Thecc.09G288900 Theobroma cacao
Thecc.10G103300 Theobroma cacao
Thhalv10012973m.g Eutrema salsugineum
Thhalv10017815m.g Eutrema salsugineum
Thhalv10020219m.g Eutrema salsugineum
Thhalv10020291m.g Eutrema salsugineum
Thhalv10023341m.g Eutrema salsugineum
TPR.G12616 Trifolium pratense
TPR.G1616 Trifolium pratense
TPR.G2200 Trifolium pratense
TPR.G2599 Trifolium pratense
TWI09G0678 Tripterygium wilfordii
TWI15G0522 Tripterygium wilfordii
TWI36G1073 Tripterygium wilfordii
TWI53G1944 Tripterygium wilfordii
TWI79G0369 Tripterygium wilfordii
TWI79G1129 Tripterygium wilfordii
unitig_52.g17272 Utricularia gibba
unitig_8.g3662 Utricularia gibba
vmacro01584 Vaccinium macrocarpon
vmacro14367 Vaccinium macrocarpon
vmacro15166 Vaccinium macrocarpon
vmacro19779 Vaccinium macrocarpon
VMungo0251G0284 Vigna mungo
VMungo0720G0514 Vigna mungo
VMungo1215G0936 Vigna mungo
VMungo1383G0513 Vigna mungo
Zm00001eb015090 Zea mays
Zm00001eb131170 Zea mays
Zm00001eb181370 Zea mays
Zm00001eb340670 Zea mays

User provided reference genes

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