Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35820 Brassica napus
A03p18940 Brassica napus
A05p11730 Brassica napus
A05p20850 Brassica napus
A06p04140 Brassica napus
Aa31LG10G5030 Aethionema arabicum
Aa31LG11G2330 Aethionema arabicum
Aa31sc652G10 Aethionema arabicum
Aa31sc652G120 Aethionema arabicum
Actinidia01133 Actinidia chinensis
Actinidia01137 Actinidia chinensis
Actinidia03448 Actinidia chinensis
Actinidia03449 Actinidia chinensis
Actinidia03451 Actinidia chinensis
Actinidia04813 Actinidia chinensis
Actinidia06643 Actinidia chinensis
Actinidia07594 Actinidia chinensis
Actinidia16138 Actinidia chinensis
Actinidia16139 Actinidia chinensis
Actinidia16140 Actinidia chinensis
Actinidia16141 Actinidia chinensis
Actinidia18981 Actinidia chinensis
Actinidia18982 Actinidia chinensis
Actinidia18983 Actinidia chinensis
Actinidia20097 Actinidia chinensis
Actinidia26136 Actinidia chinensis
Actinidia29515 Actinidia chinensis
Actinidia35043 Actinidia chinensis
Actinidia36911 Actinidia chinensis
Ah.03g146750 Amaranthus hybridus
Ah.09g237500 Amaranthus hybridus
AL1G55670 Arabidopsis lyrata
AL3G31950 Arabidopsis lyrata
AL4G29610 Arabidopsis lyrata
AL5G15820 Arabidopsis lyrata
Aqoxy1G02342 Aquilegia oxysepala
Aqoxy3G03671 Aquilegia oxysepala
Aqoxy5G02196 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A43QXH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A58RJ7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ETIN8D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GR9NQC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J2NKIW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KUSZ9U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N565XM Arachis hypogaea
AT2G10553 Arabidopsis thaliana
AT2G33835 Arabidopsis thaliana
AT3G18640 Arabidopsis thaliana
AT3G26850 Arabidopsis thaliana
ATR0177G003 Amborella trichopoda
ATR0177G006 Amborella trichopoda
ATR0697G125 Amborella trichopoda
ATR1136G179 Amborella trichopoda
Atru.chr10.1815 Acer truncatum
Atru.chr10.1830 Acer truncatum
Atru.chr4.835 Acer truncatum
Atru.chr4.836 Acer truncatum
Atru.chr9.525 Acer truncatum
Atru.chr9.526 Acer truncatum
AUR62003603 Chenopodium quinoa
AUR62008555 Chenopodium quinoa
AUR62014852 Chenopodium quinoa
AUR62017047 Chenopodium quinoa
AUR62017914 Chenopodium quinoa
AUR62021535 Chenopodium quinoa
AUR62039646 Chenopodium quinoa
AUR62039647 Chenopodium quinoa
AUR62039648 Chenopodium quinoa
AUR62039650 Chenopodium quinoa
BcaB01g03916 Brassica carinata
BcaB02g10598 Brassica carinata
BcaB04g20760 Brassica carinata
BcaB07g33709 Brassica carinata
BcaC01g05820 Brassica carinata
BcaC02g11462 Brassica carinata
BcaC08g43085 Brassica carinata
BcaC09g48821 Brassica carinata
BolC1t04521H Brassica oleracea
BolC3t14591H Brassica oleracea
BolC4t23093H Brassica oleracea
BolC6t35483H Brassica oleracea
BraA01t03661Z Brassica rapa
BraA05t20118Z Brassica rapa
BraA06t23620Z Brassica rapa
C01p45600 Brassica napus
C03p22070 Brassica napus
C04p15180 Brassica napus
C06p03450 Brassica napus
CAN.G1012.11 Capsicum annuum
CAN.G189.49 Capsicum annuum
CAN.G587.53 Capsicum annuum
CAN.G744.17 Capsicum annuum
CANSAT01G1165 Cannabis sativa
CANSAT35G1777 Cannabis sativa
CANSAT80G1925 Cannabis sativa
CARHR038870 Cardamine hirsuta
CARHR094020 Cardamine hirsuta
CARHR127950 Cardamine hirsuta
CARHR147920 Cardamine hirsuta
Carub.0001s3802 Capsella rubella
Carub.0003s1842 Capsella rubella
Carub.0004s1551 Capsella rubella
Carub.0005s0496 Capsella rubella
Ca_00352_v3 Cicer arietinum L.
Ca_02921_v3 Cicer arietinum L.
Ca_16932_v3 Cicer arietinum L.
Ca_17647_v3 Cicer arietinum L.
CBR_g37879 Chara braunii
CBR_g37886 Chara braunii
Cc00_g03520 Coffea canephora
Cc00_g20050 Coffea canephora
Cc02_g13660 Coffea canephora
CDE01G0259 Ceratophyllum demersum
CDE02G0685 Ceratophyllum demersum
CDE08G0775 Ceratophyllum demersum
CDE08G1099 Ceratophyllum demersum
CDE08G1567 Ceratophyllum demersum
Cfa000512 Carpinus fangiana
Cfa002823 Carpinus fangiana
Ciclev10014553m.g Citrus clementina
Ciclev10018493m.g Citrus clementina
CiPaw.03G128800 Carya illinoinensis
CiPaw.09G062400 Carya illinoinensis
CiPaw.10G051400 Carya illinoinensis
CiPaw.11G055300 Carya illinoinensis
CiPaw.11G055400 Carya illinoinensis
ClCG01G015510 Citrullus lanatus
ClCG01G023150 Citrullus lanatus
ClCG06G015550 Citrullus lanatus
COL.COLO4_14021 Corchorus olitorius
COL.COLO4_24322 Corchorus olitorius
COL.COLO4_31434 Corchorus olitorius
Cpa.g.c42460 Carica papaya
Cpa.g.sc373.1 Carica papaya
Cpa.g.sc42.122 Carica papaya
Cpa.g.sc94.72 Carica papaya
Cre01.g003450 Chlamydomonas reinhardtii
CsaV3_1G003050 Cucumis sativus L.
CsaV3_6G041740 Cucumis sativus L.
CsaV3_6G050300 Cucumis sativus L.
CSS0006899 Camellia sinensis var. sinensis
CSS0011515 Camellia sinensis var. sinensis
CSS0023333 Camellia sinensis var. sinensis
CSS0031859 Camellia sinensis var. sinensis
CSS0036101 Camellia sinensis var. sinensis
CSS0039968 Camellia sinensis var. sinensis
DCAR_000420 Daucus carota
DCAR_008020 Daucus carota
DCAR_010881 Daucus carota
DCAR_023163 Daucus carota
DCAR_031318 Daucus carota
Dinv17337 Davidia involucrata
Dinv17430 Davidia involucrata
Dinv20529 Davidia involucrata
Dinv24328 Davidia involucrata
Dinv24732 Davidia involucrata
Dinv25812 Davidia involucrata
Dinv40587 Davidia involucrata
Duzib147G0862 Durio zibethinus
Duzib160G0283 Durio zibethinus
Duzib160G0654 Durio zibethinus
Duzib187G0404 Durio zibethinus
Duzib205G0866 Durio zibethinus
ECA232G2971 Erigeron canadensis
ECA236G3691 Erigeron canadensis
ECA246G3190 Erigeron canadensis
ECA246G4840 Erigeron canadensis
EL10Ac5g11157 Beta vulgaris
EL10Ac6g15275 Beta vulgaris
EL10Ac8g20422 Beta vulgaris
Eucgr.B00614 Eucalyptus grandis
Eucgr.E03255 Eucalyptus grandis
Eucgr.I00225 Eucalyptus grandis
FAN08G0155 Fragaria x ananassa
FAN11G2325 Fragaria x ananassa
FAN16G2575 Fragaria x ananassa
FAN18G0264 Fragaria x ananassa
FAN19G1884 Fragaria x ananassa
FAN21G1068 Fragaria x ananassa
FAN23G1052 Fragaria x ananassa
FAN25G2856 Fragaria x ananassa
FAN26G1648 Fragaria x ananassa
FAN28G2033 Fragaria x ananassa
FvH4_1g24100 Fragaria vesca
FvH4_3g08810 Fragaria vesca
FvH4_5g13670 Fragaria vesca
Glyma.04G160800 Glycine max
Glyma.04G214200 Glycine max
Glyma.05G190500 Glycine max
Glyma.06G152200 Glycine max
Glyma.06G204600 Glycine max
Glyma.13G236800 Glycine max
Glyma.15G076800 Glycine max
Gohir.A03G070700 Gossypium hirsutum
Gohir.A03G087300 Gossypium hirsutum
Gohir.A05G159900 Gossypium hirsutum
Gohir.A06G211200 Gossypium hirsutum
Gohir.A11G227302 Gossypium hirsutum
Gohir.A11G227304 Gossypium hirsutum
Gohir.D02G108001 Gossypium hirsutum
Gohir.D03G097100 Gossypium hirsutum
Gohir.D05G162600 Gossypium hirsutum
Gohir.D06G210000 Gossypium hirsutum
Gohir.D11G229640 Gossypium hirsutum
Gorai.003G068000 Gossypium raimondii
Gorai.003G101900 Gossypium raimondii
Gorai.005G122500 Gossypium raimondii
Gorai.009G167600 Gossypium raimondii
Gorai.010G256500 Gossypium raimondii
GSVIVG01008114001 Vitis vinifera
GSVIVG01010035001 Vitis vinifera
GSVIVG01021094001 Vitis vinifera
HanXRQChr04g0123801 Helianthus annuus
HanXRQChr08g0230421 Helianthus annuus
HanXRQChr08g0232591 Helianthus annuus
HanXRQChr15g0483421 Helianthus annuus
HanXRQChr15g0484651 Helianthus annuus
Haze_06400 Corylus avellana
Haze_07744 Corylus avellana
Haze_25122 Corylus avellana
Hma1.2p1_0060F.1_g032960 Hydrangea macrophylla
Hma1.2p1_0208F.1_g088380 Hydrangea macrophylla
HPP92_007834 Vanilla planifolia
HPP92_012422 Vanilla planifolia
HPP92_013320 Vanilla planifolia
HPP92_014193 Vanilla planifolia
HPP92_026449 Vanilla planifolia
Hund04477 Selenicereus undatus
Hund23782 Selenicereus undatus
Lalb_Chr05g0229601 Lupinus albus
Lalb_Chr07g0184471 Lupinus albus
Lalb_Chr08g0238451 Lupinus albus
Lalb_Chr11g0068351 Lupinus albus
Lalb_Chr16g0391651 Lupinus albus
Lalb_Chr16g0391661 Lupinus albus
Lalb_Chr20g0121651 Lupinus albus
Lalb_Chr23g0272561 Lupinus albus
Lj1g0022982 Lotus japonicus
Lj1g0025338 Lotus japonicus
Lj2A291T22 Lonicera japonica
Lj2A603T36 Lonicera japonica
Lj4A691T76 Lonicera japonica
Lj4g0000833 Lotus japonicus
Lj5A134T72 Lonicera japonica
Lj5P134T60 Lonicera japonica
Lj6g0024088 Lotus japonicus
Lsat_1_v5_gn_1_124320 Lactuca sativa
Lsat_1_v5_gn_5_23020 Lactuca sativa
Lsat_1_v5_gn_6_96540 Lactuca sativa
Manes.06G083000 Manihot esculenta
Manes.12G153500 Manihot esculenta
Manes.14G086800 Manihot esculenta
Manes.16G030100 Manihot esculenta
Mapoly0005s0067 Marchantia polymorpha
MBI02_g25827_MAGBIO Magnolia biondii
MBI03_g11313_MAGBIO Magnolia biondii
MBI06_g18871_MAGBIO Magnolia biondii
MD01G1013400 Malus domestica
MD05G1311700 Malus domestica
MD10G1291300 Malus domestica
MD14G1213100 Malus domestica
MD15G1337600 Malus domestica
Medtr2g014260 Medicago truncatula
Medtr2g060650 Medicago truncatula
Medtr2g061440 Medicago truncatula
Medtr3g095960 Medicago truncatula
Medtr8g093480 Medicago truncatula
MELO3C007268.2 Cucumis melo
MELO3C008046.2 Cucumis melo
MELO3C017234.2 Cucumis melo
MELO3C017235.2 Cucumis melo
Migut.C01037 Erythranthe guttata
Migut.I00513 Erythranthe guttata
Migut.M01119 Erythranthe guttata
Migut.N03235 Erythranthe guttata
MSTRG.1373 Avicennia marina
MSTRG.22953 Avicennia marina
MSTRG.7348 Avicennia marina
Nitab4.5_0000299g0110 Nicotiana tabacum
Nitab4.5_0001328g0070 Nicotiana tabacum
Nitab4.5_0003348g0010 Nicotiana tabacum
Nitab4.5_0003487g0110 Nicotiana tabacum
Nitab4.5_0003942g0100 Nicotiana tabacum
Nitab4.5_0005978g0020 Nicotiana tabacum
Nitab4.5_0007645g0020 Nicotiana tabacum
Nitab4.5_0007645g0030 Nicotiana tabacum
Nn3g17474 Nelumbo nucifera
Nn3g17475 Nelumbo nucifera
Nn4g23458 Nelumbo nucifera
Nn5g28628 Nelumbo nucifera
Oeu000781.1 Olea europaea
Oeu007015.1 Olea europaea
Oeu012145.5 Olea europaea
Oeu017180.1 Olea europaea
Oeu064794.1 Olea europaea
Os03g0214900 Oryza sativa ssp. japonica
Os05g0497500 Oryza sativa ssp. japonica
Os08g0135800 Oryza sativa ssp. japonica
Peaxi162Scf00013g00075 Petunia axillaris
Peaxi162Scf00263g00317 Petunia axillaris
Peaxi162Scf00461g01012 Petunia axillaris
PGR042G2429 Punica granatum
PGR083G2399 Punica granatum
PGR102G0661 Punica granatum
PGSC0003DMG400002280 Solanum tuberosum
PGSC0003DMG400022809 Solanum tuberosum
PGSC0003DMG400024801 Solanum tuberosum
PGSC0003DMG400045292 Solanum tuberosum
PGSC0003DMG400046625 Solanum tuberosum
PGSC0003DMG401004066 Solanum tuberosum
Phvul.006G183400 Phaseolus vulgaris
Phvul.009G149100 Phaseolus vulgaris
Phvul.009G202700 Phaseolus vulgaris
Potri.005G061100 Populus trichocarpa
Potri.006G227200 Populus trichocarpa
Potri.007G107800 Populus trichocarpa
Potri.011G056600 Populus trichocarpa
Potri.018G051900 Populus trichocarpa
Pp3c12_4860 Physcomitrium patens
Pp3c4_15980 Physcomitrium patens
Prupe.4G051000 Prunus persica
Prupe.5G206700 Prunus persica
Prupe.6G159100 Prunus persica
Psat1g203520 Pisum sativum
Psat4g051080 Pisum sativum
Psat4g190920 Pisum sativum
Psat5g059960 Pisum sativum
PSO063G0467 Papaver somniferum
PSO339G4599 Papaver somniferum
PSO648G0103 Papaver somniferum
PSO782G0500 Papaver somniferum
QL05p041799 Quercus lobata
QL06p029317 Quercus lobata
QL10p019931 Quercus lobata
RcHm_v2.0_Chr1g0330581 Rosa chinensis
RcHm_v2.0_Chr2g0120281 Rosa chinensis
RcHm_v2.0_Chr5g0008951 Rosa chinensis
RcHm_v2.0_Chr7g0183291 Rosa chinensis
Rhsim02G0132800 Rhododendron simsii
Rhsim08G0144400 Rhododendron simsii
Rhsim10G0136500 Rhododendron simsii
Rhsim10G0136700 Rhododendron simsii
Rhsim10G0146200 Rhododendron simsii
Sabra05G0051500 Salix brachista
Sabra06G0175800 Salix brachista
Sabra07G0088300 Salix brachista
Sabra11G0038500 Salix brachista
Sabra18G0048000 Salix brachista
SalBow5G5238 Salvia bowleyana
SalBow6G6261 Salvia bowleyana
Sc07g0001690 Simmondsia chinensis
Sc12g0007060 Simmondsia chinensis
Sc16g0003920 Simmondsia chinensis
Sed0005310 Sechium edule
Sed0009753 Sechium edule
Sed0024902 Sechium edule
Sed0026643 Sechium edule
SEGI_09522 Sequoiadendron giganteum
SEGI_15515 Sequoiadendron giganteum
SEGI_24030 Sequoiadendron giganteum
SEGI_35726 Sequoiadendron giganteum
SGA_v2.0_scaffold19G08644 Striga asiatica
SGA_v2.0_scaffold22G09681 Striga asiatica
SGA_v2.0_scaffold25G11160 Striga asiatica
SGA_v2.0_scaffold28G11741 Striga asiatica
SHI01623 Sapria himalayana
SMO176G0008 Selaginella moellendorffii
SMO353G0398 Selaginella moellendorffii
Solyc03g006350.3 Solanum lycopersicum
Solyc04g064770.1 Solanum lycopersicum
Solyc04g064800.4 Solanum lycopersicum
Solyc06g069440.3 Solanum lycopersicum
Solyc12g040210.2 Solanum lycopersicum
Solyc12g040230.1 Solanum lycopersicum
Solyc12g040240.1 Solanum lycopersicum
Solyc12g040250.1 Solanum lycopersicum
Solyc12g040270.2 Solanum lycopersicum
Solyc12g040280.3 Solanum lycopersicum
Solyc12g040300.3 Solanum lycopersicum
Sopen03g002350 Solanum pennellii
Sopen04g026740 Solanum pennellii
Sopen04g026760 Solanum pennellii
Sopen06g026730 Solanum pennellii
Sopen10g004880 Solanum pennellii
Sopen12g019670 Solanum pennellii
Sopen12g019680 Solanum pennellii
Sp1g35790 Schrenkiella parvula
Sp2g24270 Schrenkiella parvula
Sp3g16710 Schrenkiella parvula
Sp4g16230 Schrenkiella parvula
TAR376G0938 Trochodendron aralioides
TAR622G0252 Trochodendron aralioides
TAR622G0439 Trochodendron aralioides
TAR622G0856 Trochodendron aralioides
TAR622G1025 Trochodendron aralioides
TAR622G1445 Trochodendron aralioides
TAR624G0143 Trochodendron aralioides
TAR625G0023 Trochodendron aralioides
TAR626G0353 Trochodendron aralioides
TAR628G1562 Trochodendron aralioides
TAR629G0267 Trochodendron aralioides
TAR629G2811 Trochodendron aralioides
TAR629G2997 Trochodendron aralioides
THA.LOC104801117 Tarenaya hassleriana
THA.LOC104814226 Tarenaya hassleriana
THA.LOC104820558 Tarenaya hassleriana
THA.LOC104821178 Tarenaya hassleriana
Thecc.01G127600 Theobroma cacao
Thecc.03G104300 Theobroma cacao
Thecc.06G183200 Theobroma cacao
Thhalv10004428m.g Eutrema salsugineum
Thhalv10016429m.g Eutrema salsugineum
Thhalv10020512m.g Eutrema salsugineum
TPR.G16508 Trifolium pratense
TPR.G31 Trifolium pratense
TPR.G34650 Trifolium pratense
TPR.G37341 Trifolium pratense
TWI31G0955 Tripterygium wilfordii
TWI38G0995 Tripterygium wilfordii
TWI60G0797 Tripterygium wilfordii
TWI60G0966 Tripterygium wilfordii
TWI60G1333 Tripterygium wilfordii
TWI60G1583 Tripterygium wilfordii
TWI75G1801 Tripterygium wilfordii
unitig_26.g9669 Utricularia gibba
unitig_27.g24970 Utricularia gibba
unitig_52.g17537 Utricularia gibba
unitig_62.g23526 Utricularia gibba
unitig_62.g23527 Utricularia gibba
vmacro12862 Vaccinium macrocarpon
vmacro15924 Vaccinium macrocarpon
vmacro16488 Vaccinium macrocarpon
vmacro16489 Vaccinium macrocarpon
vmacro17620 Vaccinium macrocarpon
VMungo0251G0832 Vigna mungo
VMungo0540G1880 Vigna mungo
VMungo0647G1249 Vigna mungo
VMungo1309G0947 Vigna mungo
VMungo1309G1084 Vigna mungo
VMungo1309G3138 Vigna mungo
Zm00001eb008650 Zea mays
Zm00001eb291750 Zea mays
Zm00001eb417000 Zea mays

User provided reference genes

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