Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p45030 Brassica napus
A09p15340 Brassica napus
Aa31LG2G920 Aethionema arabicum
Aa31LG8G12310 Aethionema arabicum
Aa31LG9G610 Aethionema arabicum
Aa31sc29G100 Aethionema arabicum
Aa31sc29G110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.4204 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.1909 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.405 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.11 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_365.8 Anthoceros agrestis
Actinidia06623 Actinidia chinensis
Actinidia06624 Actinidia chinensis
Actinidia14571 Actinidia chinensis
Actinidia20079 Actinidia chinensis
Actinidia20878 Actinidia chinensis
Actinidia34137 Actinidia chinensis
Ah.02g121450 Amaranthus hybridus
Ah.03g147800 Amaranthus hybridus
Ah.07g206840 Amaranthus hybridus
Ah.13g068750 Amaranthus hybridus
AL1G62160 Arabidopsis lyrata
AL2G11530 Arabidopsis lyrata
Aqoxy6G00355 Aquilegia oxysepala
Aqoxy7G00287 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1W6BS6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7K0X2P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G9TB70 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HNJH2P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KS7331 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MY632X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q0Q81L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TNLB08 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z7C896 Arachis hypogaea
AT1G53570 Arabidopsis thaliana
AT1G63700 Arabidopsis thaliana
ATR0680G095 Amborella trichopoda
ATR1136G138 Amborella trichopoda
Atru.chr1.403 Acer truncatum
Atru.chr4.893 Acer truncatum
Atru.chr9.2170 Acer truncatum
Atru.chr9.2171 Acer truncatum
Atru.chr9.2172 Acer truncatum
AUR62003559 Chenopodium quinoa
AUR62010694 Chenopodium quinoa
AUR62017188 Chenopodium quinoa
AUR62017873 Chenopodium quinoa
AUR62021150 Chenopodium quinoa
AUR62031384 Chenopodium quinoa
BcaB03g16515 Brassica carinata
BcaB07g31408 Brassica carinata
BcaB08g34542 Brassica carinata
BcaC01g03117 Brassica carinata
BcaC04g22500 Brassica carinata
BolC3t17869H Brassica oleracea
BolC3t17871H Brassica oleracea
BolC9t54757H Brassica oleracea
BraA03t13638Z Brassica rapa
BraA03t13639Z Brassica rapa
BraA09t37178Z Brassica rapa
C02p47610 Brassica napus
C03p55910 Brassica napus
C09p18610 Brassica napus
CAN.G1005.16 Capsicum annuum
CAN.G527.4 Capsicum annuum
CAN.G582.6 Capsicum annuum
CAN.G657.2 Capsicum annuum
CANSAT01G3267 Cannabis sativa
CANSAT21G0447 Cannabis sativa
CANSAT21G2055 Cannabis sativa
CARHR043820 Cardamine hirsuta
CARHR047640 Cardamine hirsuta
Carub.0001s4278 Capsella rubella
Carub.0002s0115 Capsella rubella
Ca_10738_v3 Cicer arietinum L.
Ca_16944_v3 Cicer arietinum L.
Ca_16963_v3 Cicer arietinum L.
Ca_17521_v3 Cicer arietinum L.
Ca_17636_v3 Cicer arietinum L.
Cc02_g02620 Coffea canephora
Cc07_g18450 Coffea canephora
Cc10_g13120 Coffea canephora
CDE05G2935 Ceratophyllum demersum
CDE06G0238 Ceratophyllum demersum
CDE08G0012 Ceratophyllum demersum
CDE08G1697 Ceratophyllum demersum
Cfa012216 Carpinus fangiana
Ciclev10000585m.g Citrus clementina
Ciclev10004272m.g Citrus clementina
Ciclev10004467m.g Citrus clementina
Ciclev10018781m.g Citrus clementina
CiPaw.03G122300 Carya illinoinensis
CiPaw.04G082600 Carya illinoinensis
CiPaw.04G082700 Carya illinoinensis
CiPaw.05G263800 Carya illinoinensis
CiPaw.11G133900 Carya illinoinensis
ClCG01G004530 Citrullus lanatus
ClCG01G015400 Citrullus lanatus
ClCG05G008180 Citrullus lanatus
COL.COLO4_28037 Corchorus olitorius
COL.COLO4_28038 Corchorus olitorius
COL.COLO4_33810 Corchorus olitorius
COL.COLO4_34485 Corchorus olitorius
COL.COLO4_34486 Corchorus olitorius
COL.COLO4_35736 Corchorus olitorius
Cpa.g.c45061 Carica papaya
Cpa.g.sc214.18 Carica papaya
Cpa.g.sc26.93 Carica papaya
Cpa.g.sc4129.1 Carica papaya
Cpa.g.sc42.155 Carica papaya
Cpa.g.sc74.1 Carica papaya
CsaV3_3G017270 Cucumis sativus L.
CsaV3_5G004750 Cucumis sativus L.
CsaV3_6G041620 Cucumis sativus L.
CSS0001512 Camellia sinensis var. sinensis
CSS0035410 Camellia sinensis var. sinensis
CSS0037755 Camellia sinensis var. sinensis
DCAR_001213 Daucus carota
DCAR_006734 Daucus carota
DCAR_008376 Daucus carota
DCAR_010294 Daucus carota
Dinv07374 Davidia involucrata
Dinv24357 Davidia involucrata
Dinv28410 Davidia involucrata
Dinv28411 Davidia involucrata
Dinv35229 Davidia involucrata
Dinv38930 Davidia involucrata
Dinv41136 Davidia involucrata
Duzib068G0735 Durio zibethinus
Duzib084G1449 Durio zibethinus
Duzib187G0079 Durio zibethinus
Duzib205G0193 Durio zibethinus
Duzib205G0793 Durio zibethinus
ECA232G1634 Erigeron canadensis
ECA233G1233 Erigeron canadensis
ECA233G1529 Erigeron canadensis
ECA246G4433 Erigeron canadensis
EL10Ac6g15311 Beta vulgaris
EL10Ac7g17909 Beta vulgaris
Eucgr.A02762 Eucalyptus grandis
Eucgr.H04962 Eucalyptus grandis
FAN01G1318 Fragaria x ananassa
FAN03G0129 Fragaria x ananassa
FAN03G2104 Fragaria x ananassa
FAN04G1589 Fragaria x ananassa
FAN06G2216 Fragaria x ananassa
FAN06G2601 Fragaria x ananassa
FAN08G0441 Fragaria x ananassa
FAN10G1921 Fragaria x ananassa
FAN10G3631 Fragaria x ananassa
FAN13G1567 Fragaria x ananassa
FAN18G1144 Fragaria x ananassa
FAN19G2284 Fragaria x ananassa
FAN23G0848 Fragaria x ananassa
FAN23G2515 Fragaria x ananassa
FAN26G3249 Fragaria x ananassa
FAN28G0620 Fragaria x ananassa
FvH4_1g24310 Fragaria vesca
FvH4_5g02670 Fragaria vesca
FvH4_7g29920 Fragaria vesca
Glyma.01G220700 Glycine max
Glyma.04G213000 Glycine max
Glyma.05G191700 Glycine max
Glyma.06G153200 Glycine max
Glyma.08G015500 Glycine max
Glyma.08G156900 Glycine max
Glyma.09G135100 Glycine max
Glyma.10G232800 Glycine max
Glyma.11G022900 Glycine max
Glyma.12G157032 Glycine max
Glyma.16G181000 Glycine max
Glyma.20G161500 Glycine max
Gohir.A02G068000 Gossypium hirsutum
Gohir.A05G385300 Gossypium hirsutum
Gohir.A08G183301 Gossypium hirsutum
Gohir.A08G183401 Gossypium hirsutum
Gohir.A09G050200 Gossypium hirsutum
Gohir.A12G001400 Gossypium hirsutum
Gohir.D02G074000 Gossypium hirsutum
Gohir.D04G022500 Gossypium hirsutum
Gohir.D08G201900 Gossypium hirsutum
Gohir.D09G043100 Gossypium hirsutum
Gohir.D12G001200 Gossypium hirsutum
Gorai.004G213200 Gossypium raimondii
Gorai.005G083400 Gossypium raimondii
Gorai.006G049500 Gossypium raimondii
Gorai.008G000500 Gossypium raimondii
Gorai.012G034500 Gossypium raimondii
GSVIVG01019739001 Vitis vinifera
GSVIVG01019796001 Vitis vinifera
GSVIVG01026487001 Vitis vinifera
GSVIVG01028897001 Vitis vinifera
HanXRQChr05g0137671 Helianthus annuus
HanXRQChr05g0141181 Helianthus annuus
HanXRQChr06g0165921 Helianthus annuus
HanXRQChr10g0304211 Helianthus annuus
HanXRQChr14g0433371 Helianthus annuus
HanXRQChr15g0468891 Helianthus annuus
HanXRQChr17g0533581 Helianthus annuus
Haze_00018 Corylus avellana
Haze_08793 Corylus avellana
Haze_18722 Corylus avellana
Haze_25230 Corylus avellana
Hma1.2p1_0896F.1_g234110 Hydrangea macrophylla
Hma1.2p1_1123F.1_g259490 Hydrangea macrophylla
Hma1.2p1_1123F.1_g259500 Hydrangea macrophylla
Hma1.2p1_1318F.1_g275200 Hydrangea macrophylla
Hma1.2p1_2038F.1_g312090 Hydrangea macrophylla
HPP92_008496 Vanilla planifolia
HPP92_009283 Vanilla planifolia
HPP92_011413 Vanilla planifolia
Hund04367 Selenicereus undatus
Hund04410 Selenicereus undatus
Hund04771 Selenicereus undatus
Hund11458 Selenicereus undatus
Hund11460 Selenicereus undatus
Lalb_Chr05g0211781 Lupinus albus
Lalb_Chr06g0161261 Lupinus albus
Lalb_Chr07g0184411 Lupinus albus
Lalb_Chr08g0238371 Lupinus albus
Lalb_Chr09g0320931 Lupinus albus
Lalb_Chr11g0068421 Lupinus albus
Lalb_Chr16g0390041 Lupinus albus
Lalb_Chr21g0305151 Lupinus albus
Lalb_Chr23g0272601 Lupinus albus
Lj1A1001T55 Lonicera japonica
Lj1g0001812 Lotus japonicus
Lj2g0017911 Lotus japonicus
Lj4A842G83 Lonicera japonica
Lj4g0001098 Lotus japonicus
Lj4g0019110 Lotus japonicus
Lj5g0016521 Lotus japonicus
Lj8C220T6 Lonicera japonica
Lsat_1_v5_gn_2_37381 Lactuca sativa
Lsat_1_v5_gn_3_7200 Lactuca sativa
Lsat_1_v5_gn_5_68820 Lactuca sativa
Lsat_1_v5_gn_8_7320 Lactuca sativa
Manes.02G020500 Manihot esculenta
Manes.02G173500 Manihot esculenta
Manes.06G150300 Manihot esculenta
Manes.12G155500 Manihot esculenta
Manes.13G087000 Manihot esculenta
Mapoly0085s0091 Marchantia polymorpha
MBI03_g35244_MAGBIO Magnolia biondii
MBI03_g35295_MAGBIO Magnolia biondii
MBI06_g29673_MAGBIO Magnolia biondii
MBI17_g35254_MAGBIO Magnolia biondii
MBI18_g29413_MAGBIO Magnolia biondii
MD01G1205500 Malus domestica
MD03G1070200 Malus domestica
MD06G1085900 Malus domestica
MD07G1274900 Malus domestica
MD11G1074000 Malus domestica
Medtr1g100250 Medicago truncatula
Medtr3g096230 Medicago truncatula
Medtr8g093730 Medicago truncatula
Medtr8g098425 Medicago truncatula
MELO3C005481.2 Cucumis melo
MELO3C006925.2 Cucumis melo
MELO3C008058.2 Cucumis melo
Migut.A00739 Erythranthe guttata
Migut.F00321 Erythranthe guttata
Migut.F00322 Erythranthe guttata
Migut.F01099 Erythranthe guttata
Migut.H00712 Erythranthe guttata
Migut.L00882 Erythranthe guttata
Migut.L00963 Erythranthe guttata
MSTRG.11975 Avicennia marina
MSTRG.23460 Avicennia marina
MSTRG.2652 Avicennia marina
MSTRG.80 Avicennia marina
MSTRG.8469 Avicennia marina
Nitab4.5_0000080g0140 Nicotiana tabacum
Nitab4.5_0000084g0180 Nicotiana tabacum
Nitab4.5_0000174g0230 Nicotiana tabacum
Nitab4.5_0000856g0090 Nicotiana tabacum
Nitab4.5_0001615g0050 Nicotiana tabacum
Nitab4.5_0001951g0020 Nicotiana tabacum
Nitab4.5_0002972g0030 Nicotiana tabacum
Nitab4.5_0002975g0090 Nicotiana tabacum
Nitab4.5_0007038g0010 Nicotiana tabacum
Nitab4.5_0014059g0010 Nicotiana tabacum
Nn1g01553 Nelumbo nucifera
Nn1g06261 Nelumbo nucifera
Nn5g28566 Nelumbo nucifera
Nn6g33396 Nelumbo nucifera
Oeu003006.1 Olea europaea
Oeu004244.1 Olea europaea
Oeu033663.1 Olea europaea
Oeu034003.2 Olea europaea
Oeu037824.1 Olea europaea
Oeu047696.1 Olea europaea
Oeu050133.3 Olea europaea
Oeu061654.1 Olea europaea
Oeu064568.1 Olea europaea
Os02g0555900 Oryza sativa ssp. japonica
Os02g0666300 Oryza sativa ssp. japonica
Os04g0437600 Oryza sativa ssp. japonica
Os04g0559800 Oryza sativa ssp. japonica
Os11g0207200 Oryza sativa ssp. japonica
Peaxi162Scf00057g00143 Petunia axillaris
Peaxi162Scf00066g01932 Petunia axillaris
Peaxi162Scf00119g01017 Petunia axillaris
Peaxi162Scf00119g01221 Petunia axillaris
Peaxi162Scf00183g00024 Petunia axillaris
Peaxi162Scf00848g00217 Petunia axillaris
PGR042G3090 Punica granatum
PGR102G2629 Punica granatum
PGR119G0798 Punica granatum
PGSC0003DMG400012203 Solanum tuberosum
PGSC0003DMG400015802 Solanum tuberosum
PGSC0003DMG400024820 Solanum tuberosum
PGSC0003DMG400028666 Solanum tuberosum
PGSC0003DMG400029929 Solanum tuberosum
Phvul.002G272100 Phaseolus vulgaris
Phvul.002G290600 Phaseolus vulgaris
Phvul.004G112000 Phaseolus vulgaris
Phvul.007G072801 Phaseolus vulgaris
Phvul.009G150500 Phaseolus vulgaris
Potri.001G102900 Populus trichocarpa
Potri.003G129000 Populus trichocarpa
Potri.005G062500 Populus trichocarpa
Potri.007G106800 Populus trichocarpa
Potri.012G143900 Populus trichocarpa
Potri.015G146700 Populus trichocarpa
Pp3c20_16130 Physcomitrium patens
Pp3c23_8340 Physcomitrium patens
Pp3c24_6080 Physcomitrium patens
Pp3c8_10220 Physcomitrium patens
Prupe.2G298100 Prunus persica
Prupe.4G270800 Prunus persica
Prupe.5G102100 Prunus persica
Psat1g051000 Pisum sativum
Psat5g062440 Pisum sativum
Psat5g092920 Pisum sativum
Psat6g193600 Pisum sativum
Psat7g032880 Pisum sativum
Psat7g046440 Pisum sativum
PSO478G2066 Papaver somniferum
PSO782G2869 Papaver somniferum
QL09p013684 Quercus lobata
QL09p029035 Quercus lobata
QL10p044511 Quercus lobata
QL12p032634 Quercus lobata
RcHm_v2.0_Chr1g0377881 Rosa chinensis
RcHm_v2.0_Chr2g0120811 Rosa chinensis
RcHm_v2.0_Chr7g0197281 Rosa chinensis
Rhsim02G0232800 Rhododendron simsii
Rhsim03G0188600 Rhododendron simsii
Rhsim05G0024600 Rhododendron simsii
Rhsim08G0002800 Rhododendron simsii
Rhsim10G0135100 Rhododendron simsii
Sabra03G0091700 Salix brachista
Sabra05G0052000 Salix brachista
Sabra12G0108000 Salix brachista
Sabra15G0155800 Salix brachista
SalBow2G1150 Salvia bowleyana
SalBow4G0750 Salvia bowleyana
Sc13g0008920 Simmondsia chinensis
Sc16g0003790 Simmondsia chinensis
Sc16g0003800 Simmondsia chinensis
Sed0002475 Sechium edule
Sed0004847 Sechium edule
Sed0008256 Sechium edule
Sed0009456 Sechium edule
Sed0017998 Sechium edule
Sed0027791 Sechium edule
SEGI_05339 Sequoiadendron giganteum
SEGI_08968 Sequoiadendron giganteum
SEGI_19959 Sequoiadendron giganteum
SEGI_37144 Sequoiadendron giganteum
SEGI_39256 Sequoiadendron giganteum
SGA_v2.0_scaffold113G31711 Striga asiatica
SGA_v2.0_scaffold173G39169 Striga asiatica
SGA_v2.0_scaffold370G50117 Striga asiatica
SGA_v2.0_scaffold44G16735 Striga asiatica
SGA_v2.0_scaffold60G21082 Striga asiatica
SGA_v2.0_scaffold96G28926 Striga asiatica
SHI13769 Sapria himalayana
SMO137G0387 Selaginella moellendorffii
SMO356G0554 Selaginella moellendorffii
SMO364G0025 Selaginella moellendorffii
SMO364G0712 Selaginella moellendorffii
Solyc03g025360.3 Solanum lycopersicum
Solyc04g064590.3 Solanum lycopersicum
Solyc06g036080.4 Solanum lycopersicum
Solyc08g081210.4 Solanum lycopersicum
Solyc11g006000.3 Solanum lycopersicum
Sopen03g004200 Solanum pennellii
Sopen04g026530 Solanum pennellii
Sopen06g011840 Solanum pennellii
Sopen08g029520 Solanum pennellii
Sopen11g001940 Solanum pennellii
Sp2g00950 Schrenkiella parvula
Sp3g27060 Schrenkiella parvula
TAR374G1404 Trochodendron aralioides
TAR375G0134 Trochodendron aralioides
TAR381G1507 Trochodendron aralioides
TAR625G0869 Trochodendron aralioides
TAR625G1084 Trochodendron aralioides
TAR629G0340 Trochodendron aralioides
THA.LOC104807156 Tarenaya hassleriana
THA.LOC104809383 Tarenaya hassleriana
THA.LOC104813363 Tarenaya hassleriana
THA.LOC104817950 Tarenaya hassleriana
THA.LOC104819497 Tarenaya hassleriana
THA.LOC104823589 Tarenaya hassleriana
Thecc.01G131500 Theobroma cacao
Thecc.03G180600 Theobroma cacao
Thecc.03G280700 Theobroma cacao
Thecc.08G141300 Theobroma cacao
Thhalv10010957m.g Eutrema salsugineum
Thhalv10022608m.g Eutrema salsugineum
Thhalv10023253m.g Eutrema salsugineum
TPR.G12830 Trifolium pratense
TPR.G20744 Trifolium pratense
TPR.G26994 Trifolium pratense
TPR.G27015 Trifolium pratense
TPR.G37370 Trifolium pratense
TWI14G0599 Tripterygium wilfordii
TWI23G0396 Tripterygium wilfordii
TWI31G0632 Tripterygium wilfordii
TWI39G0618 Tripterygium wilfordii
TWI79G1771 Tripterygium wilfordii
unitig_736.g22679 Utricularia gibba
unitig_749.g13754 Utricularia gibba
unitig_749.g13755 Utricularia gibba
unitig_899.g14683 Utricularia gibba
unitig_92.g28263 Utricularia gibba
vmacro06649 Vaccinium macrocarpon
vmacro11377 Vaccinium macrocarpon
vmacro12806 Vaccinium macrocarpon
vmacro18669 Vaccinium macrocarpon
VMungo0251G1754 Vigna mungo
VMungo0251G3277 Vigna mungo
VMungo0251G3743 Vigna mungo
VMungo0464G0294 Vigna mungo
VMungo0720G0764 Vigna mungo
VMungo1309G2736 Vigna mungo
Zm00001eb074180 Zea mays
Zm00001eb074190 Zea mays
Zm00001eb074200 Zea mays
Zm00001eb168730 Zea mays
Zm00001eb186910 Zea mays
Zm00001eb243650 Zea mays
Zm00001eb249950 Zea mays
Zm00001eb422820 Zea mays

User provided reference genes

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