Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p32140 Brassica napus
A09p35560 Brassica napus
A10p28090 Brassica napus
Aa31LG3G17880 Aethionema arabicum
Aa31LG6G11990 Aethionema arabicum
Aa31LG6G8400 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1413 Anthoceros agrestis
Actinidia01308 Actinidia chinensis
Actinidia02595 Actinidia chinensis
Actinidia15426 Actinidia chinensis
Actinidia16992 Actinidia chinensis
Actinidia23318 Actinidia chinensis
Actinidia25667 Actinidia chinensis
Actinidia29755 Actinidia chinensis
Actinidia37935 Actinidia chinensis
Ah.00g000200 Amaranthus hybridus
Ah.05g177830 Amaranthus hybridus
Ah.11g039760 Amaranthus hybridus
AL1G44820 Arabidopsis lyrata
AL1G48870 Arabidopsis lyrata
AL6G19390 Arabidopsis lyrata
Aqoxy2G00782 Aquilegia oxysepala
Aqoxy3G03353 Aquilegia oxysepala
Aqoxy6G00140 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1GC9V5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.96LFE1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AMY8LP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FNG8N4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KF4G8Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KF5N5L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P6P7G9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SUJ24G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V4C7Y3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W27CY8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y1TCZK Arachis hypogaea
AT1G30755 Arabidopsis thaliana
AT1G34320 Arabidopsis thaliana
AT5G08660 Arabidopsis thaliana
ATR1134G016 Amborella trichopoda
Atru.BG.249.p Acer truncatum
Atru.chr1.3396 Acer truncatum
Atru.chr13.1849 Acer truncatum
AUR62004808 Chenopodium quinoa
AUR62023586 Chenopodium quinoa
AUR62033898 Chenopodium quinoa
AUR62036026 Chenopodium quinoa
AUR62041901 Chenopodium quinoa
BcaB04g17882 Brassica carinata
BcaB04g17885 Brassica carinata
BcaB05g21576 Brassica carinata
BcaB07g32721 Brassica carinata
BcaB07g33134 Brassica carinata
BcaB08g37234 Brassica carinata
BcaC03g13237 Brassica carinata
BcaC05g27095 Brassica carinata
BcaC08g43785 Brassica carinata
BolC2t06328H Brassica oleracea
BolC5t31710H Brassica oleracea
BolC6t36297H Brassica oleracea
BolC9t59577H Brassica oleracea
BraA02t04963Z Brassica rapa
BraA09t38759Z Brassica rapa
BraA09t39082Z Brassica rapa
BraA10t44858Z Brassica rapa
C02p03690 Brassica napus
C05p29810 Brassica napus
C06p11670 Brassica napus
C09p68290 Brassica napus
CAN.G199.24 Capsicum annuum
CAN.G311.36 Capsicum annuum
CAN.G61.15 Capsicum annuum
CANSAT01G2011 Cannabis sativa
CANSAT25G1017 Cannabis sativa
CANSAT25G2305 Cannabis sativa
CARHR030220 Cardamine hirsuta
CARHR033780 Cardamine hirsuta
CARHR054970 Cardamine hirsuta
CARHR204320 Cardamine hirsuta
Carub.0001s2905 Capsella rubella
Carub.0001s3246 Capsella rubella
Carub.0006s0765 Capsella rubella
Ca_00836_v3 Cicer arietinum L.
Ca_10627_v3 Cicer arietinum L.
Ca_13431_v3 Cicer arietinum L.
Ca_17013_v3 Cicer arietinum L.
Ca_17015_v3 Cicer arietinum L.
Ca_17599_v3 Cicer arietinum L.
Ca_27945_v3 Cicer arietinum L.
CBR_g12489 Chara braunii
CBR_g41803 Chara braunii
Cc00_g07180 Coffea canephora
Cc10_g01590 Coffea canephora
CDE02G3627 Ceratophyllum demersum
CDE05G1840 Ceratophyllum demersum
CDE05G2610 Ceratophyllum demersum
CDE08G1442 Ceratophyllum demersum
Cfa013959 Carpinus fangiana
Cfa018208 Carpinus fangiana
Ciclev10000547m.g Citrus clementina
Ciclev10000613m.g Citrus clementina
Ciclev10025161m.g Citrus clementina
CiPaw.03G114400 Carya illinoinensis
CiPaw.07G149000 Carya illinoinensis
CiPaw.15G083300 Carya illinoinensis
CiPaw.16G062800 Carya illinoinensis
ClCG08G014250 Citrullus lanatus
ClCG09G010390 Citrullus lanatus
COL.COLO4_05835 Corchorus olitorius
COL.COLO4_12131 Corchorus olitorius
COL.COLO4_26138 Corchorus olitorius
COL.COLO4_26139 Corchorus olitorius
Cpa.g.sc26.55 Carica papaya
Cpa.g.sc37.69 Carica papaya
Cpa.g.sc37.70 Carica papaya
Cpa.g.sc66.75 Carica papaya
Cpa.g.sc66.77 Carica papaya
CsaV3_2G029580 Cucumis sativus L.
CsaV3_7G024220 Cucumis sativus L.
CSS0001460 Camellia sinensis var. sinensis
CSS0014311 Camellia sinensis var. sinensis
CSS0021780 Camellia sinensis var. sinensis
CSS0037559 Camellia sinensis var. sinensis
CSS0038559 Camellia sinensis var. sinensis
CSS0047588 Camellia sinensis var. sinensis
DCAR_009490 Daucus carota
DCAR_010069 Daucus carota
DCAR_013873 Daucus carota
DCAR_014782 Daucus carota
DCAR_016724 Daucus carota
DCAR_028428 Daucus carota
Dinv05403 Davidia involucrata
Dinv23356 Davidia involucrata
Dinv31853 Davidia involucrata
Dinv39524 Davidia involucrata
Dinv41681 Davidia involucrata
Duzib041G0022 Durio zibethinus
Duzib093G1760 Durio zibethinus
Duzib116G0685 Durio zibethinus
Duzib177G0296 Durio zibethinus
Duzib187G0082 Durio zibethinus
ECA233G2702 Erigeron canadensis
ECA238G0168 Erigeron canadensis
ECA238G3516 Erigeron canadensis
ECA247G0947 Erigeron canadensis
ECA247G3356 Erigeron canadensis
ECA247G3423 Erigeron canadensis
EL10Ac1g00063 Beta vulgaris
EL10Ac1g02187 Beta vulgaris
EL10Ac4g08967 Beta vulgaris
Eucgr.F00581 Eucalyptus grandis
Eucgr.F02632 Eucalyptus grandis
Eucgr.F04140 Eucalyptus grandis
Eucgr.F04141 Eucalyptus grandis
Eucgr.H05069 Eucalyptus grandis
FAN15G2243 Fragaria x ananassa
FAN19G0663 Fragaria x ananassa
FAN20G0193 Fragaria x ananassa
FAN20G0602 Fragaria x ananassa
FAN23G1868 Fragaria x ananassa
FAN24G3448 Fragaria x ananassa
FAN26G2989 Fragaria x ananassa
FAN27G0043 Fragaria x ananassa
FAN27G2795 Fragaria x ananassa
FAN28G2612 Fragaria x ananassa
FvH4_1g25750 Fragaria vesca
FvH4_2g12340 Fragaria vesca
FvH4_2g12350 Fragaria vesca
FvH4_2g38360 Fragaria vesca
Glyma.04G023800 Glycine max
Glyma.04G206400 Glycine max
Glyma.05G196700 Glycine max
Glyma.06G024000 Glycine max
Glyma.06G159200 Glycine max
Glyma.06G159300 Glycine max
Glyma.08G004300 Glycine max
Glyma.10G218000 Glycine max
Glyma.12G161651 Glycine max
Glyma.14G219500 Glycine max
Glyma.17G258400 Glycine max
Glyma.20G174000 Glycine max
Gohir.A02G061200 Gossypium hirsutum
Gohir.A02G093400 Gossypium hirsutum
Gohir.A05G186300 Gossypium hirsutum
Gohir.A05G249900 Gossypium hirsutum
Gohir.A07G207700 Gossypium hirsutum
Gohir.D02G066600 Gossypium hirsutum
Gohir.D02G098000 Gossypium hirsutum
Gohir.D05G189200 Gossypium hirsutum
Gohir.D05G251700 Gossypium hirsutum
Gohir.D07G213700 Gossypium hirsutum
Gorai.001G241600 Gossypium raimondii
Gorai.005G075500 Gossypium raimondii
Gorai.005G111800 Gossypium raimondii
Gorai.009G194400 Gossypium raimondii
Gorai.009G263100 Gossypium raimondii
Gorai.010G121900 Gossypium raimondii
Gorai.010G187600 Gossypium raimondii
GSVIVG01009920001 Vitis vinifera
GSVIVG01022400001 Vitis vinifera
GSVIVG01034887001 Vitis vinifera
HanXRQChr04g0111621 Helianthus annuus
HanXRQChr05g0158471 Helianthus annuus
HanXRQChr08g0217701 Helianthus annuus
HanXRQChr10g0288891 Helianthus annuus
HanXRQChr11g0324321 Helianthus annuus
HanXRQChr11g0324461 Helianthus annuus
HanXRQChr12g0366961 Helianthus annuus
HanXRQChr13g0387111 Helianthus annuus
HanXRQChr14g0430431 Helianthus annuus
Haze_17898 Corylus avellana
Haze_22641 Corylus avellana
Hma1.2p1_0023F.1_g015510 Hydrangea macrophylla
Hma1.2p1_0057F.1_g032060 Hydrangea macrophylla
Hma1.2p1_0057F.1_g032070 Hydrangea macrophylla
Hma1.2p1_0855F.1_g228995 Hydrangea macrophylla
HPP92_003133 Vanilla planifolia
HPP92_004433 Vanilla planifolia
HPP92_004436 Vanilla planifolia
HPP92_006858 Vanilla planifolia
HPP92_006874 Vanilla planifolia
HPP92_009271 Vanilla planifolia
HPP92_019376 Vanilla planifolia
HPP92_019382 Vanilla planifolia
Hund05185 Selenicereus undatus
Hund06894 Selenicereus undatus
Hund16807 Selenicereus undatus
Hund27073 Selenicereus undatus
Lalb_Chr01g0009961 Lupinus albus
Lalb_Chr06g0161921 Lupinus albus
Lalb_Chr07g0184081 Lupinus albus
Lalb_Chr08g0237831 Lupinus albus
Lalb_Chr11g0061871 Lupinus albus
Lalb_Chr13g0296811 Lupinus albus
Lalb_Chr14g0369931 Lupinus albus
Lalb_Chr21g0305691 Lupinus albus
Lj1g0013699 Lotus japonicus
Lj1g0016723 Lotus japonicus
Lj4A23G22 Lonicera japonica
Lj4A797G58 Lonicera japonica
Lj4C827T6 Lonicera japonica
Lj4g0020258 Lotus japonicus
Lj5g0007456 Lotus japonicus
Lj5g0016010 Lotus japonicus
Lj7C301G2 Lonicera japonica
Lsat_1_v5_gn_1_8340 Lactuca sativa
Lsat_1_v5_gn_2_39121 Lactuca sativa
Lsat_1_v5_gn_2_9700 Lactuca sativa
Lsat_1_v5_gn_8_30740 Lactuca sativa
Manes.02G190200 Manihot esculenta
Manes.05G146500 Manihot esculenta
Manes.12G080102 Manihot esculenta
Manes.18G013100 Manihot esculenta
Manes.18G099200 Manihot esculenta
Mapoly0113s0015 Marchantia polymorpha
MBI09_g04507_MAGBIO Magnolia biondii
MBI17_g06060_MAGBIO Magnolia biondii
MD05G1039900 Malus domestica
MD08G1012300 Malus domestica
MD10G1045400 Malus domestica
MD10G1045600 Malus domestica
MD10G1045700 Malus domestica
MD10G1045800 Malus domestica
MD12G1057900 Malus domestica
MD15G1011300 Malus domestica
MD15G1140000 Malus domestica
Medtr1g025340 Medicago truncatula
Medtr1g096970 Medicago truncatula
Medtr3g097240 Medicago truncatula
Medtr3g114010 Medicago truncatula
Medtr8g095080 Medicago truncatula
MELO3C011017.2 Cucumis melo
MELO3C023672.2 Cucumis melo
Migut.C00846 Erythranthe guttata
Migut.C01229 Erythranthe guttata
Migut.H00796 Erythranthe guttata
MSTRG.25254 Avicennia marina
MSTRG.25430 Avicennia marina
Nitab4.5_0000159g0080 Nicotiana tabacum
Nitab4.5_0000337g0090 Nicotiana tabacum
Nitab4.5_0000531g0020 Nicotiana tabacum
Nitab4.5_0002641g0090 Nicotiana tabacum
Nitab4.5_0003251g0030 Nicotiana tabacum
Nitab4.5_0003952g0010 Nicotiana tabacum
Nitab4.5_0006501g0020 Nicotiana tabacum
Nitab4.5_0010710g0020 Nicotiana tabacum
Nitab4.5_0011198g0020 Nicotiana tabacum
Nn1g05915 Nelumbo nucifera
Nn1g08460 Nelumbo nucifera
Nn5g27829 Nelumbo nucifera
Nn5g29106 Nelumbo nucifera
Oeu004772.5 Olea europaea
Oeu007325.2 Olea europaea
Oeu014178.4 Olea europaea
Oeu030009.1 Olea europaea
Oeu054477.3 Olea europaea
Oeu056495.1 Olea europaea
Oeu061966.1 Olea europaea
Os01g0873900 Oryza sativa ssp. japonica
Os02g0551700 Oryza sativa ssp. japonica
Os04g0433600 Oryza sativa ssp. japonica
Os05g0430300 Oryza sativa ssp. japonica
Os06g0716000 Oryza sativa ssp. japonica
Peaxi162Scf00151g00818 Petunia axillaris
Peaxi162Scf00268g01314 Petunia axillaris
Peaxi162Scf00400g00105 Petunia axillaris
Peaxi162Scf00553g01114 Petunia axillaris
PGR031G1400 Punica granatum
PGR042G1469 Punica granatum
PGR042G1721 Punica granatum
PGR042G2935 Punica granatum
PGR083G1265 Punica granatum
PGR102G2241 Punica granatum
PGSC0003DMG400009867 Solanum tuberosum
PGSC0003DMG400026118 Solanum tuberosum
PGSC0003DMG400033893 Solanum tuberosum
Phvul.001G004900 Phaseolus vulgaris
Phvul.002G277200 Phaseolus vulgaris
Phvul.007G088000 Phaseolus vulgaris
Phvul.009G017500 Phaseolus vulgaris
Phvul.009G156900 Phaseolus vulgaris
Phvul.009G157000 Phaseolus vulgaris
Potri.001G305800 Populus trichocarpa
Potri.002G021400 Populus trichocarpa
Potri.005G240300 Populus trichocarpa
Potri.013G115300 Populus trichocarpa
Potri.019G001500 Populus trichocarpa
Potri.019G085900 Populus trichocarpa
Pp3c14_4570 Physcomitrium patens
Pp3c16_15140 Physcomitrium patens
Pp3c27_2910 Physcomitrium patens
Prupe.1G364500 Prunus persica
Prupe.4G285700 Prunus persica
Prupe.8G052300 Prunus persica
Prupe.8G052600 Prunus persica
Psat5g012800 Pisum sativum
Psat5g057920 Pisum sativum
Psat5g057960 Pisum sativum
Psat5g058000 Pisum sativum
Psat5g219320 Pisum sativum
Psat6g002480 Pisum sativum
Psat6g189400 Pisum sativum
Psat7g042720 Pisum sativum
PSO170G2937 Papaver somniferum
PSO541G2900 Papaver somniferum
PSO675G8984 Papaver somniferum
PSO700G0105 Papaver somniferum
PSO782G4055 Papaver somniferum
QL02p011731 Quercus lobata
QL02p034232 Quercus lobata
QL10p039259 Quercus lobata
RcHm_v2.0_Chr3g0484671 Rosa chinensis
RcHm_v2.0_Chr3g0484691 Rosa chinensis
RcHm_v2.0_Chr6g0272351 Rosa chinensis
RcHm_v2.0_Chr6g0272361 Rosa chinensis
RcHm_v2.0_Chr6g0302951 Rosa chinensis
Rhsim01G0002500 Rhododendron simsii
Rhsim06G0098800 Rhododendron simsii
RhsimUnG0065600 Rhododendron simsii
Sabra02G0017700 Salix brachista
Sabra05G0185800 Salix brachista
Sabra13G0097500 Salix brachista
Sabra16G0192100 Salix brachista
Sabra19G0005200 Salix brachista
Sabra19G0005300 Salix brachista
Sabra19G0014700 Salix brachista
Sabra19G0096500 Salix brachista
SalBow7G1442 Salvia bowleyana
SalBow7G4493 Salvia bowleyana
Sc01g0001670 Simmondsia chinensis
Sc02g0008610 Simmondsia chinensis
Sc06g0003100 Simmondsia chinensis
Sc26g0001510 Simmondsia chinensis
Sc26g0001530 Simmondsia chinensis
Sc26g0001540 Simmondsia chinensis
Sed0001022 Sechium edule
Sed0011272 Sechium edule
Sed0014195 Sechium edule
Sed0028113 Sechium edule
SEGI_13148 Sequoiadendron giganteum
SEGI_31560 Sequoiadendron giganteum
SEGI_33044 Sequoiadendron giganteum
SEGI_38960 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32455 Striga asiatica
SGA_v2.0_scaffold211G42148 Striga asiatica
SGA_v2.0_scaffold24G10530 Striga asiatica
SGA_v2.0_scaffold92G28223 Striga asiatica
SHI08062 Sapria himalayana
SMO146G0008 Selaginella moellendorffii
SMO358G0757 Selaginella moellendorffii
Solyc04g025210.4 Solanum lycopersicum
Solyc04g081510.4 Solanum lycopersicum
Solyc06g065460.2 Solanum lycopersicum
Solyc11g017000.2 Solanum lycopersicum
Sopen04g011610 Solanum pennellii
Sopen04g035120 Solanum pennellii
Sopen06g023950 Solanum pennellii
Sopen11g009000 Solanum pennellii
Sopen11g009010 Solanum pennellii
Sp1g26640 Schrenkiella parvula
Sp1g29530 Schrenkiella parvula
Sp6g34200 Schrenkiella parvula
TAR381G0652 Trochodendron aralioides
TAR381G1397 Trochodendron aralioides
TAR536G0006 Trochodendron aralioides
TAR624G0793 Trochodendron aralioides
TAR624G1140 Trochodendron aralioides
TAR628G0098 Trochodendron aralioides
THA.LOC104806780 Tarenaya hassleriana
THA.LOC104809189 Tarenaya hassleriana
THA.LOC104818411 Tarenaya hassleriana
Thecc.01G143900 Theobroma cacao
Thecc.08G045300 Theobroma cacao
Thecc.08G200600 Theobroma cacao
Thhalv10007023m.g Eutrema salsugineum
Thhalv10007107m.g Eutrema salsugineum
Thhalv10012930m.g Eutrema salsugineum
TPR.G15711 Trifolium pratense
TPR.G15723 Trifolium pratense
TPR.G26424 Trifolium pratense
TPR.G28693 Trifolium pratense
TPR.G33418 Trifolium pratense
TPR.G34553 Trifolium pratense
TWI32G0875 Tripterygium wilfordii
TWI34G0755 Tripterygium wilfordii
TWI56G1101 Tripterygium wilfordii
TWI75G0412 Tripterygium wilfordii
TWI79G0185 Tripterygium wilfordii
unitig_26.g9881 Utricularia gibba
unitig_32.g11224 Utricularia gibba
unitig_52.g17584 Utricularia gibba
unitig_749.g13895 Utricularia gibba
vmacro04355 Vaccinium macrocarpon
vmacro12505 Vaccinium macrocarpon
vmacro13137 Vaccinium macrocarpon
vmacro22894 Vaccinium macrocarpon
VMungo0251G0052 Vigna mungo
VMungo0647G2069 Vigna mungo
VMungo0720G0238 Vigna mungo
VMungo1309G1555 Vigna mungo
VMungo1309G2351 Vigna mungo
VMungo1309G2759 Vigna mungo
Zm00001eb082630 Zea mays
Zm00001eb146270 Zea mays
Zm00001eb228090 Zea mays
Zm00001eb243500 Zea mays
Zm00001eb272300 Zea mays
Zm00001eb289300 Zea mays
Zm00001eb348740 Zea mays
Zm00001eb366560 Zea mays
Zm00001eb422670 Zea mays

User provided reference genes

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