Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p14520 Brassica napus
A03p16740 Brassica napus
A03p22610 Brassica napus
A04p22730 Brassica napus
A04p29970 Brassica napus
A05p06250 Brassica napus
A05p15410 Brassica napus
A10p05720 Brassica napus
Aa31LG5G19400 Aethionema arabicum
Aa31LG5G6670 Aethionema arabicum
Aa31sc684G40 Aethionema arabicum
Actinidia13946 Actinidia chinensis
Actinidia15103 Actinidia chinensis
Actinidia23224 Actinidia chinensis
Actinidia26681 Actinidia chinensis
Actinidia28250 Actinidia chinensis
Actinidia28576 Actinidia chinensis
Actinidia32635 Actinidia chinensis
Actinidia37439 Actinidia chinensis
Ah.03g133280 Amaranthus hybridus
Ah.05g170360 Amaranthus hybridus
Ah.08g222980 Amaranthus hybridus
AL2G26570 Arabidopsis lyrata
AL4G37900 Arabidopsis lyrata
Aqoxy4G02496 Aquilegia oxysepala
Aqoxy5G00832 Aquilegia oxysepala
Aqoxy5G03731 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.68L72N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E0MG3A Arachis hypogaea
AT1G07160 Arabidopsis thaliana
AT1G67820 Arabidopsis thaliana
AT2G05050 Arabidopsis thaliana
AT2G30020 Arabidopsis thaliana
AT2G40180 Arabidopsis thaliana
AT3G27140 Arabidopsis thaliana
AT4G08260 Arabidopsis thaliana
ATR0681G290 Amborella trichopoda
ATR0739G119 Amborella trichopoda
ATR1089G113 Amborella trichopoda
ATR1120G054 Amborella trichopoda
Atru.chr11.2153 Acer truncatum
Atru.chr12.69 Acer truncatum
Atru.chr13.2517 Acer truncatum
Atru.chr3.4175 Acer truncatum
Atru.chr3.4183 Acer truncatum
AUR62001620 Chenopodium quinoa
AUR62005488 Chenopodium quinoa
AUR62013380 Chenopodium quinoa
AUR62020159 Chenopodium quinoa
AUR62022905 Chenopodium quinoa
AUR62024253 Chenopodium quinoa
AUR62038533 Chenopodium quinoa
AUR62043572 Chenopodium quinoa
BcaB01g03561 Brassica carinata
BcaB01g04137 Brassica carinata
BcaB02g09043 Brassica carinata
BcaB02g10287 Brassica carinata
BcaB05g24318 Brassica carinata
BcaB06g28339 Brassica carinata
BcaB06g29136 Brassica carinata
BcaC01g05422 Brassica carinata
BcaC01g06036 Brassica carinata
BcaC02g07360 Brassica carinata
BcaC02g08060 Brassica carinata
BcaC02g11080 Brassica carinata
BcaC02g12132 Brassica carinata
BcaC02g12133 Brassica carinata
BcaC03g14883 Brassica carinata
BolC2t08485H Brassica oleracea
BolC3t14348H Brassica oleracea
BolC3t15065H Brassica oleracea
BolC4t22345H Brassica oleracea
BolC4t23598H Brassica oleracea
BolC4t27406H Brassica oleracea
BolC4t28290H Brassica oleracea
BolC5t29295H Brassica oleracea
BraA02t06518Z Brassica rapa
BraA03t10961Z Brassica rapa
BraA03t11487Z Brassica rapa
BraA04t17814Z Brassica rapa
BraA04t18511Z Brassica rapa
BraA05t19591Z Brassica rapa
BraA05t20459Z Brassica rapa
BraA10t42833Z Brassica rapa
C02p23560 Brassica napus
C03p19700 Brassica napus
C03p26800 Brassica napus
C04p07210 Brassica napus
C04p20700 Brassica napus
C04p58890 Brassica napus
C04p67850 Brassica napus
C05p05240 Brassica napus
CAN.G1095.2 Capsicum annuum
CAN.G1268.16 Capsicum annuum
CAN.G583.6 Capsicum annuum
CANSAT21G0869 Cannabis sativa
CANSAT21G1337 Cannabis sativa
CANSAT54G0297 Cannabis sativa
CANSAT56G4196 Cannabis sativa
CARHR006870 Cardamine hirsuta
CARHR123270 Cardamine hirsuta
CARHR135210 Cardamine hirsuta
Carub.0001s0645 Capsella rubella
Carub.0002s1428 Capsella rubella
Carub.0004s1112 Capsella rubella
Carub.0004s2239 Capsella rubella
Ca_05620_v3 Cicer arietinum L.
Ca_14961_v3 Cicer arietinum L.
Cc01_g14430 Coffea canephora
Cc02_g06260 Coffea canephora
Cc10_g08590 Coffea canephora
Cc11_g15860 Coffea canephora
CDE02G0566 Ceratophyllum demersum
CDE02G1368 Ceratophyllum demersum
CDE04G2324 Ceratophyllum demersum
CDE06G1689 Ceratophyllum demersum
CDE06G2117 Ceratophyllum demersum
Cfa001303 Carpinus fangiana
Cfa008077 Carpinus fangiana
Cfa009226 Carpinus fangiana
Cfa011721 Carpinus fangiana
Ciclev10020447m.g Citrus clementina
Ciclev10028590m.g Citrus clementina
Ciclev10031891m.g Citrus clementina
Ciclev10033904m.g Citrus clementina
CiPaw.03G014300 Carya illinoinensis
CiPaw.05G180800 Carya illinoinensis
CiPaw.13G075000 Carya illinoinensis
ClCG03G000620 Citrullus lanatus
ClCG07G004330 Citrullus lanatus
ClCG11G008440 Citrullus lanatus
COL.COLO4_11101 Corchorus olitorius
COL.COLO4_23464 Corchorus olitorius
COL.COLO4_25762 Corchorus olitorius
Cpa.g.sc19.159 Carica papaya
Cpa.g.sc2.433 Carica papaya
Cpa.g.sc21.86 Carica papaya
Cpa.g.sc33.38 Carica papaya
CsaV3_1G036330 Cucumis sativus L.
CsaV3_2G024970 Cucumis sativus L.
CsaV3_2G033210 Cucumis sativus L.
CsaV3_5G010270 Cucumis sativus L.
CSS0002507 Camellia sinensis var. sinensis
CSS0003100 Camellia sinensis var. sinensis
CSS0019049 Camellia sinensis var. sinensis
CSS0029552 Camellia sinensis var. sinensis
CSS0038836 Camellia sinensis var. sinensis
CSS0043882 Camellia sinensis var. sinensis
CSS0047797 Camellia sinensis var. sinensis
CSS0048331 Camellia sinensis var. sinensis
DCAR_007363 Daucus carota
DCAR_011826 Daucus carota
DCAR_031164 Daucus carota
Dinv03092 Davidia involucrata
Dinv15215 Davidia involucrata
Dinv21745 Davidia involucrata
Dinv22111 Davidia involucrata
Dinv37411 Davidia involucrata
Duzib106G1583 Durio zibethinus
Duzib114G0235 Durio zibethinus
Duzib150G0159 Durio zibethinus
Duzib150G1229 Durio zibethinus
Duzib168G1868 Durio zibethinus
Duzib170G0904 Durio zibethinus
Duzib177G0402 Durio zibethinus
Duzib251G0051 Durio zibethinus
ECA233G3663 Erigeron canadensis
ECA238G0433 Erigeron canadensis
ECA247G0232 Erigeron canadensis
ECA247G2769 Erigeron canadensis
ECA248G0997 Erigeron canadensis
ECA248G2728 Erigeron canadensis
EL10Ac1g01268 Beta vulgaris
EL10Ac2g04852 Beta vulgaris
EL10Ac6g13858 Beta vulgaris
EL10Ac7g16198 Beta vulgaris
Eucgr.B03277 Eucalyptus grandis
Eucgr.F02951 Eucalyptus grandis
Eucgr.G03072 Eucalyptus grandis
FAN07G2108 Fragaria x ananassa
FAN10G2607 Fragaria x ananassa
FAN11G0808 Fragaria x ananassa
FAN12G1871 Fragaria x ananassa
FAN16G1328 Fragaria x ananassa
FAN17G2932 Fragaria x ananassa
FAN21G1948 Fragaria x ananassa
FAN22G0788 Fragaria x ananassa
FAN25G1934 Fragaria x ananassa
FvH4_3g38990 Fragaria vesca
FvH4_4g25730 Fragaria vesca
FvH4_7g24650 Fragaria vesca
Glyma.02G228200 Glycine max
Glyma.11G170200 Glycine max
Glyma.11G171600 Glycine max
Glyma.14G195200 Glycine max
Glyma.18G061000 Glycine max
Gohir.A03G028900 Gossypium hirsutum
Gohir.A05G107300 Gossypium hirsutum
Gohir.A05G330600 Gossypium hirsutum
Gohir.A08G201100 Gossypium hirsutum
Gohir.A10G239900 Gossypium hirsutum
Gohir.A13G233000 Gossypium hirsutum
Gohir.D03G139700 Gossypium hirsutum
Gohir.D04G069000 Gossypium hirsutum
Gohir.D05G107400 Gossypium hirsutum
Gohir.D08G218300 Gossypium hirsutum
Gohir.D10G251800 Gossypium hirsutum
Gohir.D13G238600 Gossypium hirsutum
Gorai.003G146400 Gossypium raimondii
Gorai.004G232300 Gossypium raimondii
Gorai.009G111500 Gossypium raimondii
Gorai.011G292300 Gossypium raimondii
Gorai.012G077700 Gossypium raimondii
Gorai.013G269500 Gossypium raimondii
GSVIVG01000543001 Vitis vinifera
GSVIVG01024710001 Vitis vinifera
GSVIVG01032793001 Vitis vinifera
GSVIVG01036289001 Vitis vinifera
HanXRQChr01g0011751 Helianthus annuus
HanXRQChr07g0203201 Helianthus annuus
HanXRQChr07g0203271 Helianthus annuus
HanXRQChr07g0203281 Helianthus annuus
HanXRQChr08g0208311 Helianthus annuus
HanXRQChr08g0214071 Helianthus annuus
HanXRQChr08g0229111 Helianthus annuus
HanXRQChr14g0459551 Helianthus annuus
Haze_12262 Corylus avellana
Haze_13958 Corylus avellana
Haze_17242 Corylus avellana
Haze_24356 Corylus avellana
Hma1.2p1_0079F.1_g041050 Hydrangea macrophylla
Hma1.2p1_3236F.1_g334260 Hydrangea macrophylla
HPP92_005640 Vanilla planifolia
HPP92_009209 Vanilla planifolia
HPP92_012034 Vanilla planifolia
HPP92_013784 Vanilla planifolia
HPP92_025100 Vanilla planifolia
Hund15918 Selenicereus undatus
Hund18834 Selenicereus undatus
Hund20986 Selenicereus undatus
Hund25396 Selenicereus undatus
Lalb_Chr04g0252171 Lupinus albus
Lalb_Chr10g0103441 Lupinus albus
Lalb_Chr17g0345201 Lupinus albus
Lalb_Chr20g0114911 Lupinus albus
Lj1A131T60 Lonicera japonica
Lj1A133T34 Lonicera japonica
Lj1A958T72 Lonicera japonica
Lj1g0021589 Lotus japonicus
Lj3A1060T71 Lonicera japonica
Lj6g0007332 Lotus japonicus
Lj7A419T38 Lonicera japonica
LjContig00141g0011281 Lotus japonicus
Lsat_1_v5_gn_2_124161 Lactuca sativa
Lsat_1_v5_gn_5_172740 Lactuca sativa
Lsat_1_v5_gn_8_152540 Lactuca sativa
Lsat_1_v5_gn_8_155220 Lactuca sativa
Lsat_1_v5_gn_9_18940 Lactuca sativa
Manes.07G131300 Manihot esculenta
Manes.10G010600 Manihot esculenta
Manes.12G021700 Manihot esculenta
Manes.13G022701 Manihot esculenta
Manes.18G116200 Manihot esculenta
Manes.18G136400 Manihot esculenta
Mapoly0016s0194 Marchantia polymorpha
MBI03_g05512_MAGBIO Magnolia biondii
MBI03_g29105_MAGBIO Magnolia biondii
MBI06_g14324_MAGBIO Magnolia biondii
MBI15_g02581_MAGBIO Magnolia biondii
MBI15_g07346_MAGBIO Magnolia biondii
MBI15_g46231_MAGBIO Magnolia biondii
MCO15G277 Micromonas commoda
MD01G1154600 Malus domestica
MD03G1065600 Malus domestica
MD07G1223600 Malus domestica
MD07G1223700 Malus domestica
MD11G1070500 Malus domestica
MD13G1099500 Malus domestica
Medtr3g464650 Medicago truncatula
Medtr3g464700 Medicago truncatula
Medtr5g071550 Medicago truncatula
MELO3C008091.2 Cucumis melo
MELO3C018362.2 Cucumis melo
MELO3C020536.2 Cucumis melo
Migut.D01935 Erythranthe guttata
Migut.E00210 Erythranthe guttata
Migut.F00667 Erythranthe guttata
Migut.I00002 Erythranthe guttata
MSTRG.13345 Avicennia marina
MSTRG.8341 Avicennia marina
MSTRG.8944 Avicennia marina
MSTRG.9677 Avicennia marina
Nitab4.5_0000067g0210 Nicotiana tabacum
Nitab4.5_0000213g0080 Nicotiana tabacum
Nitab4.5_0000789g0020 Nicotiana tabacum
Nitab4.5_0000797g0120 Nicotiana tabacum
Nitab4.5_0000839g0070 Nicotiana tabacum
Nitab4.5_0000967g0110 Nicotiana tabacum
Nitab4.5_0001806g0020 Nicotiana tabacum
Nitab4.5_0003391g0010 Nicotiana tabacum
Nitab4.5_0006024g0010 Nicotiana tabacum
Nitab4.5_0006247g0010 Nicotiana tabacum
Nitab4.5_0012747g0010 Nicotiana tabacum
Nn2g10895 Nelumbo nucifera
Nn2g13171 Nelumbo nucifera
Nn4g22568 Nelumbo nucifera
Nn5g27388 Nelumbo nucifera
Oeu004688.1 Olea europaea
Oeu009299.1 Olea europaea
Oeu048285.2 Olea europaea
Oeu048286.1 Olea europaea
Oeu049175.1 Olea europaea
Oeu051768.1 Olea europaea
Os03g0292100 Oryza sativa ssp. japonica
Os11g0242200 Oryza sativa ssp. japonica
Os12g0198200 Oryza sativa ssp. japonica
Peaxi162Scf00045g02523 Petunia axillaris
Peaxi162Scf00053g02612 Petunia axillaris
Peaxi162Scf00076g00028 Petunia axillaris
Peaxi162Scf00078g00733 Petunia axillaris
Peaxi162Scf00284g00819 Petunia axillaris
Peaxi162Scf00540g00128 Petunia axillaris
PGR042G2436 Punica granatum
PGR102G1261 Punica granatum
PGR102G1334 Punica granatum
PGR142G2129 Punica granatum
PGSC0003DMG400013908 Solanum tuberosum
PGSC0003DMG400020541 Solanum tuberosum
PGSC0003DMG400027174 Solanum tuberosum
PGSC0003DMG400030364 Solanum tuberosum
Phvul.006G069500 Phaseolus vulgaris
Phvul.008G259800 Phaseolus vulgaris
Potri.001G278500 Populus trichocarpa
Potri.008G070400 Populus trichocarpa
Potri.009G073000 Populus trichocarpa
Potri.010G047600 Populus trichocarpa
Potri.010G187000 Populus trichocarpa
Potri.013G099400 Populus trichocarpa
Potri.019G071600 Populus trichocarpa
Prupe.1G246400 Prunus persica
Prupe.2G252200 Prunus persica
Prupe.6G054500 Prunus persica
Psat0s7054g0040 Pisum sativum
Psat0s7911g0040 Pisum sativum
Psat2g057200 Pisum sativum
Psat5g155400 Pisum sativum
Psat6g000640 Pisum sativum
PSO017G5312 Papaver somniferum
PSO063G6060 Papaver somniferum
PSO339G0615 Papaver somniferum
PSO339G5176 Papaver somniferum
PSO384G1601 Papaver somniferum
PSO754G0003 Papaver somniferum
PSO801G0162 Papaver somniferum
QL01p038981 Quercus lobata
QL08p063276 Quercus lobata
QL08p063373 Quercus lobata
QL09p001818 Quercus lobata
QL11p001792 Quercus lobata
RcHm_v2.0_Chr1g0370481 Rosa chinensis
RcHm_v2.0_Chr4g0433171 Rosa chinensis
RcHm_v2.0_Chr5g0070291 Rosa chinensis
RcHm_v2.0_Chr6g0251221 Rosa chinensis
Rhsim01G0238000 Rhododendron simsii
Rhsim09G0015200 Rhododendron simsii
Rhsim09G0178100 Rhododendron simsii
Rhsim09G0178200 Rhododendron simsii
Rhsim09G0178300 Rhododendron simsii
Rhsim12G0109200 Rhododendron simsii
Rhsim13G0067900 Rhododendron simsii
RhsimUnG0026100 Rhododendron simsii
Sabra08G0051800 Salix brachista
Sabra09G0055300 Salix brachista
Sabra10G0021000 Salix brachista
Sabra10G0144200 Salix brachista
Sabra13G0083900 Salix brachista
Sabra13G0085200 Salix brachista
Sabra19G0083500 Salix brachista
SalBow2G1312 Salvia bowleyana
SalBow2G2373 Salvia bowleyana
SalBow2G3396 Salvia bowleyana
SalBow3G0755 Salvia bowleyana
SalBow5G2776 Salvia bowleyana
SalBow6G1871 Salvia bowleyana
SalBow6G7086 Salvia bowleyana
SalBow7G2269 Salvia bowleyana
SalBow8G1118 Salvia bowleyana
Sc11g0000920 Simmondsia chinensis
Sc21g0006480 Simmondsia chinensis
Sc23g0000060 Simmondsia chinensis
Sed0004166 Sechium edule
Sed0005874 Sechium edule
Sed0025238 Sechium edule
Sed0026375 Sechium edule
SEGI_01691 Sequoiadendron giganteum
SEGI_01714 Sequoiadendron giganteum
SEGI_15278 Sequoiadendron giganteum
SEGI_18655 Sequoiadendron giganteum
SEGI_19380 Sequoiadendron giganteum
SEGI_23739 Sequoiadendron giganteum
SEGI_28416 Sequoiadendron giganteum
SEGI_30729 Sequoiadendron giganteum
SEGI_37102 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29570 Striga asiatica
SGA_v2.0_scaffold114G31830 Striga asiatica
SGA_v2.0_scaffold60G20987 Striga asiatica
SMO337G0031 Selaginella moellendorffii
SMO361G0134 Selaginella moellendorffii
SMO361G0813 Selaginella moellendorffii
Solyc03g013100.1 Solanum lycopersicum
Solyc03g013140.1 Solanum lycopersicum
Solyc05g052520.3 Solanum lycopersicum
Solyc06g007190.4 Solanum lycopersicum
Solyc06g082080.3 Solanum lycopersicum
Sopen03g010100 Solanum pennellii
Sopen05g031070 Solanum pennellii
Sopen06g002170 Solanum pennellii
Sopen06g033470 Solanum pennellii
Sp1g05930 Schrenkiella parvula
Sp4g12590 Schrenkiella parvula
Sp4g22530 Schrenkiella parvula
Sp5g22830 Schrenkiella parvula
TAR374G1531 Trochodendron aralioides
TAR622G1000 Trochodendron aralioides
TAR623G1592 Trochodendron aralioides
TAR628G1671 Trochodendron aralioides
TAR633G2205 Trochodendron aralioides
TAR636G0115 Trochodendron aralioides
THA.LOC104800746 Tarenaya hassleriana
THA.LOC104815805 Tarenaya hassleriana
THA.LOC104824323 Tarenaya hassleriana
THA.LOC104825553 Tarenaya hassleriana
Thecc.02G262000 Theobroma cacao
Thecc.09G351200 Theobroma cacao
Thecc.10G014200 Theobroma cacao
Thhalv10008595m.g Eutrema salsugineum
Thhalv10017681m.g Eutrema salsugineum
Thhalv10017990m.g Eutrema salsugineum
Thhalv10018643m.g Eutrema salsugineum
TPR.G29023 Trifolium pratense
TPR.G5093 Trifolium pratense
TWI18G0466 Tripterygium wilfordii
TWI31G0492 Tripterygium wilfordii
TWI53G1200 Tripterygium wilfordii
TWI75G0755 Tripterygium wilfordii
unitig_21.g20403 Utricularia gibba
unitig_744.g24415 Utricularia gibba
vmacro02950 Vaccinium macrocarpon
vmacro10034 Vaccinium macrocarpon
vmacro14606 Vaccinium macrocarpon
vmacro14607 Vaccinium macrocarpon
vmacro16187 Vaccinium macrocarpon
VMungo0540G0124 Vigna mungo
VMungo0647G1336 Vigna mungo
Zm00001eb013450 Zea mays
Zm00001eb112250 Zea mays
Zm00001eb168010 Zea mays
Zm00001eb168030 Zea mays
Zm00001eb264360 Zea mays
Zm00001eb396970 Zea mays

User provided reference genes

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