Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p16800 Brassica napus
A02p40680 Brassica napus
A02p40690 Brassica napus
A04p01480 Brassica napus
A04p10790 Brassica napus
A06p44200 Brassica napus
A07p37110 Brassica napus
A09p52890 Brassica napus
Aa31LG10G14970 Aethionema arabicum
Aa31LG2G8240 Aethionema arabicum
Aa31LG4G10290 Aethionema arabicum
Aa31LG9G17460 Aethionema arabicum
Actinidia06489 Actinidia chinensis
Actinidia12199 Actinidia chinensis
Actinidia12386 Actinidia chinensis
Actinidia17206 Actinidia chinensis
Actinidia18712 Actinidia chinensis
Actinidia34034 Actinidia chinensis
Actinidia38442 Actinidia chinensis
Ah.05g174770 Amaranthus hybridus
AL2G30120 Arabidopsis lyrata
AL5G10760 Arabidopsis lyrata
AL5G43020 Arabidopsis lyrata
AL7G46480 Arabidopsis lyrata
Aqoxy2G03768 Aquilegia oxysepala
Aqoxy3G00016 Aquilegia oxysepala
Aqoxy5G03935 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4Y17C7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8EB5MJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B5SPTF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BUCQ0Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HGM4NK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K3YHKD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KV9NUE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N1Z9KW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.THIA8F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X8WSRG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZJ8A5J Arachis hypogaea
AT1G70690 Arabidopsis thaliana
AT2G01660 Arabidopsis thaliana
AT3G60720 Arabidopsis thaliana
AT5G37660 Arabidopsis thaliana
ATR0564G220 Amborella trichopoda
ATR0564G324 Amborella trichopoda
ATR0568G138 Amborella trichopoda
Atru.chr1.1992 Acer truncatum
Atru.chr11.531 Acer truncatum
Atru.chr5.272 Acer truncatum
AUR62004179 Chenopodium quinoa
AUR62011646 Chenopodium quinoa
AUR62013678 Chenopodium quinoa
AUR62016474 Chenopodium quinoa
BcaB03g14836 Brassica carinata
BcaB05g24604 Brassica carinata
BcaB06g27115 Brassica carinata
BcaB07g29902 Brassica carinata
BcaC02g09593 Brassica carinata
BcaC02g10174 Brassica carinata
BcaC03g15221 Brassica carinata
BcaC03g17989 Brassica carinata
BcaC03g17990 Brassica carinata
BcaC03g17991 Brassica carinata
BcaC03g17993 Brassica carinata
BcaC03g17996 Brassica carinata
BcaC06g31286 Brassica carinata
BcaC06g34137 Brassica carinata
BcaC07g40591 Brassica carinata
BcaC07g42633 Brassica carinata
BcaC08g46519 Brassica carinata
BolC2t08849H Brassica oleracea
BolC2t12096H Brassica oleracea
BolC2t12097H Brassica oleracea
BolC2t12101H Brassica oleracea
BolC2t12103H Brassica oleracea
BolC4t24749H Brassica oleracea
BolC4t26021H Brassica oleracea
BolC6t39533H Brassica oleracea
BolC7t43766H Brassica oleracea
BolC8t51157H Brassica oleracea
BraA02t06735Z Brassica rapa
BraA02t09014Z Brassica rapa
BraA02t09015Z Brassica rapa
BraA02t09017Z Brassica rapa
BraA04t15866Z Brassica rapa
BraA04t16743Z Brassica rapa
BraA06t27295Z Brassica rapa
BraA07t31273Z Brassica rapa
BraA09t40721Z Brassica rapa
C02p28050 Brassica napus
C02p60410 Brassica napus
C02p60430 Brassica napus
C02p60470 Brassica napus
C02p60540 Brassica napus
C04p31960 Brassica napus
C04p44510 Brassica napus
C06p44720 Brassica napus
C07p32280 Brassica napus
C08p35640 Brassica napus
CAN.G222.40 Capsicum annuum
CAN.G829.10 Capsicum annuum
CAN.G911.1 Capsicum annuum
CANSAT01G2069 Cannabis sativa
CANSAT25G2719 Cannabis sativa
CANSAT56G0507 Cannabis sativa
CANSAT56G3636 Cannabis sativa
CARHR063950 Cardamine hirsuta
CARHR144230 Cardamine hirsuta
CARHR171100 Cardamine hirsuta
CARHR215190 Cardamine hirsuta
Carub.0002s1742 Capsella rubella
Carub.0005s0061 Capsella rubella
Carub.0005s2745 Capsella rubella
Carub.0007s3281 Capsella rubella
Ca_06870_v3 Cicer arietinum L.
Ca_17093_v3 Cicer arietinum L.
Ca_17287_v3 Cicer arietinum L.
Ca_27340_v3 Cicer arietinum L.
Cc02_g24220 Coffea canephora
Cc07_g13320 Coffea canephora
Cc11_g06990 Coffea canephora
CDE04G3480 Ceratophyllum demersum
CDE05G0593 Ceratophyllum demersum
CDE11G0495 Ceratophyllum demersum
CDE11G0896 Ceratophyllum demersum
Cfa007797 Carpinus fangiana
Cfa015005 Carpinus fangiana
Ciclev10012358m.g Citrus clementina
Ciclev10016265m.g Citrus clementina
Ciclev10024014m.g Citrus clementina
CiPaw.03G073000 Carya illinoinensis
CiPaw.05G190200 Carya illinoinensis
CiPaw.06G050200 Carya illinoinensis
CiPaw.13G034100 Carya illinoinensis
CiPaw.14G026900 Carya illinoinensis
ClCG01G006480 Citrullus lanatus
ClCG03G008780 Citrullus lanatus
ClCG06G000550 Citrullus lanatus
ClCG07G005820 Citrullus lanatus
COL.COLO4_12516 Corchorus olitorius
COL.COLO4_13430 Corchorus olitorius
COL.COLO4_16569 Corchorus olitorius
Cpa.g.c27573.1 Carica papaya
Cpa.g.sc116.66 Carica papaya
Cpa.g.sc145.10 Carica papaya
CsaV3_5G023970 Cucumis sativus L.
CsaV3_5G028090 Cucumis sativus L.
CsaV3_5G037060 Cucumis sativus L.
CsaV3_6G006320 Cucumis sativus L.
CSS0002405 Camellia sinensis var. sinensis
CSS0017853 Camellia sinensis var. sinensis
CSS0027464 Camellia sinensis var. sinensis
CSS0035865 Camellia sinensis var. sinensis
CSS0037885 Camellia sinensis var. sinensis
DCAR_007325 Daucus carota
DCAR_008545 Daucus carota
DCAR_011631 Daucus carota
DCAR_014167 Daucus carota
DCAR_014168 Daucus carota
DCAR_026795 Daucus carota
DCAR_030258 Daucus carota
Dinv18650 Davidia involucrata
Dinv18653 Davidia involucrata
Dinv19042 Davidia involucrata
Dinv28077 Davidia involucrata
Dinv28187 Davidia involucrata
Dinv43685 Davidia involucrata
Dinv44136 Davidia involucrata
Duzib133G0200 Durio zibethinus
Duzib138G0251 Durio zibethinus
Duzib138G1885 Durio zibethinus
Duzib248G1476 Durio zibethinus
Duzib251G0173 Durio zibethinus
Duzib268G0927 Durio zibethinus
ECA233G0304 Erigeron canadensis
ECA233G0446 Erigeron canadensis
ECA233G3445 Erigeron canadensis
ECA233G4580 Erigeron canadensis
ECA234G2329 Erigeron canadensis
ECA246G1093 Erigeron canadensis
EL10Ac1g00855 Beta vulgaris
EL10Ac1g00856 Beta vulgaris
EL10Ac9g22024 Beta vulgaris
Eucgr.B02954 Eucalyptus grandis
Eucgr.E01472 Eucalyptus grandis
Eucgr.F02869 Eucalyptus grandis
Eucgr.G02112 Eucalyptus grandis
Eucgr.J01605 Eucalyptus grandis
FAN01G0446 Fragaria x ananassa
FAN03G0343 Fragaria x ananassa
FAN06G0377 Fragaria x ananassa
FAN06G3734 Fragaria x ananassa
FAN10G1239 Fragaria x ananassa
FAN10G1320 Fragaria x ananassa
FAN12G3332 Fragaria x ananassa
FAN17G0092 Fragaria x ananassa
FAN19G2469 Fragaria x ananassa
FAN22G2093 Fragaria x ananassa
FAN23G1615 Fragaria x ananassa
FAN26G1602 Fragaria x ananassa
FvH4_1g30260 Fragaria vesca
FvH4_4g33800 Fragaria vesca
FvH4_7g11310 Fragaria vesca
Glyma.01G078000 Glycine max
Glyma.01G137600 Glycine max
Glyma.02G244200 Glycine max
Glyma.03G029501 Glycine max
Glyma.05G235200 Glycine max
Glyma.08G042600 Glycine max
Glyma.11G176310 Glycine max
Glyma.14G213600 Glycine max
Glyma.18G040800 Glycine max
Gohir.A01G147918 Gossypium hirsutum
Gohir.A03G117700 Gossypium hirsutum
Gohir.A04G142300 Gossypium hirsutum
Gohir.A07G097001 Gossypium hirsutum
Gohir.A08G036000 Gossypium hirsutum
Gohir.A08G136100 Gossypium hirsutum
Gohir.A11G079700 Gossypium hirsutum
Gohir.D01G141000 Gossypium hirsutum
Gohir.D02G141300 Gossypium hirsutum
Gohir.D04G185600 Gossypium hirsutum
Gohir.D07G101500 Gossypium hirsutum
Gohir.D08G046700 Gossypium hirsutum
Gohir.D08G156900 Gossypium hirsutum
Gohir.D11G084400 Gossypium hirsutum
Gorai.001G109400 Gossypium raimondii
Gorai.002G173300 Gossypium raimondii
Gorai.004G045900 Gossypium raimondii
Gorai.004G163200 Gossypium raimondii
Gorai.005G158500 Gossypium raimondii
Gorai.007G090000 Gossypium raimondii
Gorai.012G181900 Gossypium raimondii
GSVIVG01011675001 Vitis vinifera
GSVIVG01027651001 Vitis vinifera
GSVIVG01030681001 Vitis vinifera
HanXRQChr08g0224331 Helianthus annuus
HanXRQChr09g0258911 Helianthus annuus
HanXRQChr10g0299341 Helianthus annuus
HanXRQChr12g0363251 Helianthus annuus
HanXRQChr12g0363261 Helianthus annuus
HanXRQChr12g0363271 Helianthus annuus
HanXRQChr12g0363291 Helianthus annuus
HanXRQChr12g0363301 Helianthus annuus
HanXRQChr12g0363311 Helianthus annuus
HanXRQChr12g0363321 Helianthus annuus
HanXRQChr14g0440041 Helianthus annuus
HanXRQChr16g0520691 Helianthus annuus
HanXRQChr17g0567301 Helianthus annuus
Haze_02656 Corylus avellana
Haze_10903 Corylus avellana
Haze_10908 Corylus avellana
Haze_14275 Corylus avellana
Hma1.2p1_0089F.1_g045490 Hydrangea macrophylla
Hma1.2p1_0158F.1_g070090 Hydrangea macrophylla
Hma1.2p1_1583F.1_g292010 Hydrangea macrophylla
HPP92_022306 Vanilla planifolia
HPP92_023493 Vanilla planifolia
HPP92_024823 Vanilla planifolia
Hund00637 Selenicereus undatus
Hund20673 Selenicereus undatus
Hund27374 Selenicereus undatus
Lalb_Chr01g0021451 Lupinus albus
Lalb_Chr10g0104301 Lupinus albus
Lalb_Chr16g0387661 Lupinus albus
Lalb_Chr18g0053471 Lupinus albus
Lalb_Chr19g0127341 Lupinus albus
Lj1g0001888 Lotus japonicus
Lj2A522T68 Lonicera japonica
Lj2C520T4 Lonicera japonica
Lj4g0021988 Lotus japonicus
Lj4P260T22 Lonicera japonica
Lj6C739T6 Lonicera japonica
Lj6g0016655 Lotus japonicus
Lj9A567T70 Lonicera japonica
LjContig00141g0024748 Lotus japonicus
Lsat_1_v5_gn_3_53301 Lactuca sativa
Lsat_1_v5_gn_4_42960 Lactuca sativa
Lsat_1_v5_gn_8_115721 Lactuca sativa
Lsat_1_v5_gn_8_45460 Lactuca sativa
Lsat_1_v5_gn_8_45480 Lactuca sativa
Lsat_1_v5_gn_8_45500 Lactuca sativa
Manes.01G119300 Manihot esculenta
Manes.01G267800 Manihot esculenta
Manes.02G077700 Manihot esculenta
Manes.05G047800 Manihot esculenta
Manes.15G133100 Manihot esculenta
Manes.17G082200 Manihot esculenta
MBI04_g11441_MAGBIO Magnolia biondii
MBI19_g35813_MAGBIO Magnolia biondii
MBI19_g36323_MAGBIO Magnolia biondii
MD02G1208100 Malus domestica
MD04G1025700 Malus domestica
MD07G1117900 Malus domestica
MD09G1271000 Malus domestica
MD13G1029600 Malus domestica
MD16G1020400 Malus domestica
MD17G1269100 Malus domestica
Medtr3g065370 Medicago truncatula
Medtr5g078030 Medicago truncatula
Medtr8g104990 Medicago truncatula
MELO3C005278.2 Cucumis melo
MELO3C022487.2 Cucumis melo
MELO3C022837.2 Cucumis melo
MELO3C026431.2 Cucumis melo
Migut.B01609 Erythranthe guttata
Migut.E00467 Erythranthe guttata
Migut.H02254 Erythranthe guttata
Migut.L00527 Erythranthe guttata
Migut.L00637 Erythranthe guttata
MSTRG.17171 Avicennia marina
MSTRG.2139 Avicennia marina
MSTRG.2623 Avicennia marina
Nitab4.5_0000201g0090 Nicotiana tabacum
Nitab4.5_0000916g0060 Nicotiana tabacum
Nitab4.5_0004679g0080 Nicotiana tabacum
Nitab4.5_0005102g0100 Nicotiana tabacum
Nitab4.5_0006348g0030 Nicotiana tabacum
Nitab4.5_0007149g0010 Nicotiana tabacum
Nitab4.5_0009319g0020 Nicotiana tabacum
Nn1g00339 Nelumbo nucifera
Nn1g01097 Nelumbo nucifera
Nn2g15507 Nelumbo nucifera
Nn3g18340 Nelumbo nucifera
Nn3g18685 Nelumbo nucifera
Nn4g24321 Nelumbo nucifera
Nn6g34052 Nelumbo nucifera
Oeu011914.1 Olea europaea
Oeu018614.1 Olea europaea
Oeu030305.1 Olea europaea
Oeu062646.1 Olea europaea
Oeu062715.1 Olea europaea
Os02g0643900 Oryza sativa ssp. japonica
Os02g0734800 Oryza sativa ssp. japonica
Os04g0537800 Oryza sativa ssp. japonica
Os06g0253600 Oryza sativa ssp. japonica
Peaxi162Scf00013g02613 Petunia axillaris
Peaxi162Scf00337g00919 Petunia axillaris
Peaxi162Scf00562g00096 Petunia axillaris
Peaxi162Scf01350g00122 Petunia axillaris
PGR004G0841 Punica granatum
PGR004G1944 Punica granatum
PGR042G0933 Punica granatum
PGR102G0817 Punica granatum
PGR142G1704 Punica granatum
PGSC0003DMG400015664 Solanum tuberosum
PGSC0003DMG400026009 Solanum tuberosum
PGSC0003DMG400029473 Solanum tuberosum
PGSC0003DMG402014605 Solanum tuberosum
Phvul.001G229800 Phaseolus vulgaris
Phvul.002G319900 Phaseolus vulgaris
Phvul.008G154300 Phaseolus vulgaris
Phvul.008G237100 Phaseolus vulgaris
Phvul.010G079800 Phaseolus vulgaris
Potri.002G145400 Populus trichocarpa
Potri.004G086000 Populus trichocarpa
Potri.008G133500 Populus trichocarpa
Potri.010G108100 Populus trichocarpa
Potri.014G067000 Populus trichocarpa
Potri.017G130800 Populus trichocarpa
Prupe.1G331900 Prunus persica
Prupe.2G140900 Prunus persica
Prupe.3G017500 Prunus persica
Psat2g046360 Pisum sativum
Psat3g168000 Pisum sativum
Psat5g121040 Pisum sativum
Psat7g009120 Pisum sativum
PSO017G3691 Papaver somniferum
PSO170G2297 Papaver somniferum
PSO478G3313 Papaver somniferum
PSO782G3122 Papaver somniferum
QL02p058498 Quercus lobata
QL03p035062 Quercus lobata
QL04p039551 Quercus lobata
QL10p014209 Quercus lobata
QL93p0170_0130 Quercus lobata
RcHm_v2.0_Chr1g0349511 Rosa chinensis
RcHm_v2.0_Chr3g0491131 Rosa chinensis
RcHm_v2.0_Chr3g0491141 Rosa chinensis
RcHm_v2.0_Chr4g0443311 Rosa chinensis
Rhsim07G0030000 Rhododendron simsii
Rhsim09G0038400 Rhododendron simsii
Rhsim09G0091600 Rhododendron simsii
Rhsim10G0178100 Rhododendron simsii
RhsimUnG0222100 Rhododendron simsii
Sabra08G0102100 Salix brachista
Sabra10G0079100 Salix brachista
Sabra14G0047100 Salix brachista
Sabra17G0108900 Salix brachista
SalBow2G3375 Salvia bowleyana
SalBow3G1337 Salvia bowleyana
SalBow5G0309 Salvia bowleyana
SalBow5G0894 Salvia bowleyana
SalBow8G4725 Salvia bowleyana
Sc02g0002690 Simmondsia chinensis
Sc04g0005240 Simmondsia chinensis
Sc14g0006530 Simmondsia chinensis
Sc18g0003340 Simmondsia chinensis
Sed0006039 Sechium edule
Sed0010240 Sechium edule
Sed0013316 Sechium edule
Sed0016904 Sechium edule
Sed0017406 Sechium edule
Sed0018046 Sechium edule
Sed0021759 Sechium edule
Sed0024445 Sechium edule
Sed0027750 Sechium edule
SEGI_14311 Sequoiadendron giganteum
SEGI_32229 Sequoiadendron giganteum
SEGI_38447 Sequoiadendron giganteum
SGA_v2.0_scaffold113G31769 Striga asiatica
SGA_v2.0_scaffold139G35404 Striga asiatica
SGA_v2.0_scaffold45G17162 Striga asiatica
SHI04466 Sapria himalayana
SMO196G0144 Selaginella moellendorffii
Solyc01g091040.3 Solanum lycopersicum
Solyc04g007950.4 Solanum lycopersicum
Solyc05g051270.3 Solanum lycopersicum
Solyc11g011000.2 Solanum lycopersicum
Sopen01g036770 Solanum pennellii
Sopen04g003090 Solanum pennellii
Sopen05g029650 Solanum pennellii
Sopen11g005760 Solanum pennellii
Sp2g13110 Schrenkiella parvula
Sp2g23020 Schrenkiella parvula
Sp5g02530 Schrenkiella parvula
Sp5g25860 Schrenkiella parvula
Sp7g04430 Schrenkiella parvula
TAR371G0039 Trochodendron aralioides
TAR371G0584 Trochodendron aralioides
TAR388G0002 Trochodendron aralioides
TAR622G1442 Trochodendron aralioides
TAR629G0172 Trochodendron aralioides
TAR629G0797 Trochodendron aralioides
THA.LOC104805974 Tarenaya hassleriana
THA.LOC104809108 Tarenaya hassleriana
THA.LOC104817231 Tarenaya hassleriana
THA.LOC104823088 Tarenaya hassleriana
THA.LOC104825961 Tarenaya hassleriana
Thecc.01G379700 Theobroma cacao
Thecc.02G290900 Theobroma cacao
Thecc.04G054600 Theobroma cacao
Thhalv10004723m.g Eutrema salsugineum
Thhalv10006142m.g Eutrema salsugineum
Thhalv10019845m.g Eutrema salsugineum
Thhalv10027869m.g Eutrema salsugineum
TPR.G24912 Trifolium pratense
TPR.G32704 Trifolium pratense
TPR.G39109 Trifolium pratense
TPR.G8274 Trifolium pratense
TWI53G1082 Tripterygium wilfordii
TWI59G0158 Tripterygium wilfordii
TWI74G0465 Tripterygium wilfordii
TWI74G1224 Tripterygium wilfordii
unitig_26.g9724 Utricularia gibba
unitig_27.g25157 Utricularia gibba
unitig_62.g23744 Utricularia gibba
unitig_748.g8468 Utricularia gibba
vmacro07707 Vaccinium macrocarpon
vmacro10690 Vaccinium macrocarpon
vmacro13428 Vaccinium macrocarpon
vmacro22458 Vaccinium macrocarpon
VMungo0331G1019 Vigna mungo
VMungo1383G0599 Vigna mungo
VMungo1383G2753 Vigna mungo
Zm00001eb075470 Zea mays
Zm00001eb186090 Zea mays
Zm00001eb253780 Zea mays
Zm00001eb280720 Zea mays
Zm00001eb371540 Zea mays

User provided reference genes

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