Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p21680 Brassica napus
A05p39130 Brassica napus
A08p07590 Brassica napus
A10p07700 Brassica napus
A10p32510 Brassica napus
Aa31LG1G21660 Aethionema arabicum
Aa31LG3G2390 Aethionema arabicum
Aa31LG6G9490 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1395 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1397 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2593 Anthoceros agrestis
Actinidia03438 Actinidia chinensis
Actinidia06614 Actinidia chinensis
Actinidia18547 Actinidia chinensis
Actinidia20073 Actinidia chinensis
Actinidia31314 Actinidia chinensis
Actinidia32477 Actinidia chinensis
Ah.08g211430 Amaranthus hybridus
Ah.15g091420 Amaranthus hybridus
AL1G51970 Arabidopsis lyrata
AL3G21150 Arabidopsis lyrata
AL6G12970 Arabidopsis lyrata
Aqoxy1G01097 Aquilegia oxysepala
Aqoxy2G01651 Aquilegia oxysepala
Aqoxy5G02325 Aquilegia oxysepala
Aqoxy6G00371 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2NH314 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3BKB6J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6BY8XD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7BQB2W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A2V3CL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F8268P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KA6U9V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M8CBSZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N5E9VC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XGK89K Arachis hypogaea
AT1G43890 Arabidopsis thaliana
AT3G09910 Arabidopsis thaliana
AT5G03530 Arabidopsis thaliana
ATR0043G052 Amborella trichopoda
ATR0584G154 Amborella trichopoda
Atru.chr12.889 Acer truncatum
Atru.chr13.1651 Acer truncatum
Atru.chr4.914 Acer truncatum
Atru.chr8.1748 Acer truncatum
Atru.chr8.1749 Acer truncatum
AUR62003570 Chenopodium quinoa
AUR62017885 Chenopodium quinoa
AUR62026954 Chenopodium quinoa
AUR62043424 Chenopodium quinoa
AUR62043818 Chenopodium quinoa
BcaB02g11418 Brassica carinata
BcaB04g17756 Brassica carinata
BcaB05g21845 Brassica carinata
BcaB07g33969 Brassica carinata
BcaC03g12999 Brassica carinata
BcaC05g27656 Brassica carinata
BcaC05g29505 Brassica carinata
BcaC05g29718 Brassica carinata
BcaC06g32067 Brassica carinata
BcaC06g32068 Brassica carinata
BcaC08g42824 Brassica carinata
BolC2t06102H Brassica oleracea
BolC5t32373H Brassica oleracea
BolC5t34471H Brassica oleracea
BolC6t35170H Brassica oleracea
BolC9t60069H Brassica oleracea
BraA02t04765Z Brassica rapa
BraA02t04771Z Brassica rapa
BraA05t21090Z Brassica rapa
BraA05t22702Z Brassica rapa
BraA08t32775Z Brassica rapa
BraA10t45288Z Brassica rapa
BraSC36t46035Z Brassica rapa
C02p01120 Brassica napus
C05p36440 Brassica napus
C05p58150 Brassica napus
C06p00440 Brassica napus
C09p73330 Brassica napus
CAN.G1038.17 Capsicum annuum
CAN.G459.21 Capsicum annuum
CAN.G657.8 Capsicum annuum
CAN.G900.7 Capsicum annuum
CANSAT01G0898 Cannabis sativa
CANSAT56G0653 Cannabis sativa
CANSAT80G1155 Cannabis sativa
CARHR035660 Cardamine hirsuta
CARHR084420 Cardamine hirsuta
CARHR209820 Cardamine hirsuta
Carub.0001s3482 Capsella rubella
Carub.0003s0901 Capsella rubella
Carub.0006s0233 Capsella rubella
Ca_08898_v3 Cicer arietinum L.
Ca_16951_v3 Cicer arietinum L.
CBR_g233 Chara braunii
Cc02_g10650 Coffea canephora
Cc06_g04550 Coffea canephora
Cc07_g18550 Coffea canephora
Cc10_g13190 Coffea canephora
CDE02G2183 Ceratophyllum demersum
CDE04G0278 Ceratophyllum demersum
Cfa001782 Carpinus fangiana
Cfa002902 Carpinus fangiana
Cfa021477 Carpinus fangiana
Cfa021479 Carpinus fangiana
Cfa023060 Carpinus fangiana
Ciclev10002473m.g Citrus clementina
Ciclev10002477m.g Citrus clementina
Ciclev10012751m.g Citrus clementina
Ciclev10033703m.g Citrus clementina
CiPaw.01G266100 Carya illinoinensis
CiPaw.02G170600 Carya illinoinensis
CiPaw.04G081800 Carya illinoinensis
CiPaw.09G002600 Carya illinoinensis
CiPaw.09G002700 Carya illinoinensis
CiPaw.10G001600 Carya illinoinensis
CiPaw.15G023600 Carya illinoinensis
CiPaw.16G019000 Carya illinoinensis
ClCG02G000460 Citrullus lanatus
ClCG08G002380 Citrullus lanatus
ClCG08G003310 Citrullus lanatus
ClCG08G007890 Citrullus lanatus
ClCG10G019880 Citrullus lanatus
COL.COLO4_26910 Corchorus olitorius
COL.COLO4_35481 Corchorus olitorius
COL.COLO4_35754 Corchorus olitorius
Cpa.g.sc42.161 Carica papaya
Cpa.g.sc5.161 Carica papaya
Cpa.g.sc53.163 Carica papaya
Cre06.g278139 Chlamydomonas reinhardtii
Cre11.g482900 Chlamydomonas reinhardtii
CsaV3_2G019400 Cucumis sativus L.
CsaV3_2G021030 Cucumis sativus L.
CsaV3_3G036220 Cucumis sativus L.
CsaV3_6G002680 Cucumis sativus L.
CsaV3_6G034540 Cucumis sativus L.
CSS0001828 Camellia sinensis var. sinensis
CSS0004681 Camellia sinensis var. sinensis
CSS0023420 Camellia sinensis var. sinensis
CSS0039405 Camellia sinensis var. sinensis
CSS0046325 Camellia sinensis var. sinensis
DCAR_014335 Daucus carota
DCAR_014400 Daucus carota
DCAR_020805 Daucus carota
Dinv25785 Davidia involucrata
Dinv35814 Davidia involucrata
Dinv37338 Davidia involucrata
Dinv41145 Davidia involucrata
Duzib093G0411 Durio zibethinus
Duzib114G0420 Durio zibethinus
Duzib114G0700 Durio zibethinus
Duzib116G0357 Durio zibethinus
Duzib128G0261 Durio zibethinus
Duzib128G0389 Durio zibethinus
Duzib187G1581 Durio zibethinus
Duzib264G0802 Durio zibethinus
ECA232G4043 Erigeron canadensis
ECA233G0894 Erigeron canadensis
ECA233G4352 Erigeron canadensis
ECA238G3354 Erigeron canadensis
ECA246G0142 Erigeron canadensis
ECA248G3598 Erigeron canadensis
EL10Ac6g15293 Beta vulgaris
EL10Ac7g16691 Beta vulgaris
Eucgr.A01619 Eucalyptus grandis
Eucgr.F02759 Eucalyptus grandis
Eucgr.G02743 Eucalyptus grandis
Eucgr.K02437 Eucalyptus grandis
FAN01G1317 Fragaria x ananassa
FAN02G0294 Fragaria x ananassa
FAN03G0941 Fragaria x ananassa
FAN05G2758 Fragaria x ananassa
FAN05G5485 Fragaria x ananassa
FAN06G1470 Fragaria x ananassa
FAN06G4238 Fragaria x ananassa
FAN09G3296 Fragaria x ananassa
FAN10G0338 Fragaria x ananassa
FAN10G4206 Fragaria x ananassa
FAN14G4636 Fragaria x ananassa
FAN15G3498 Fragaria x ananassa
FAN19G3051 Fragaria x ananassa
FAN20G1657 Fragaria x ananassa
FAN23G1230 Fragaria x ananassa
FAN23G2707 Fragaria x ananassa
FAN24G3475 Fragaria x ananassa
FAN26G2964 Fragaria x ananassa
FAN28G1065 Fragaria x ananassa
FvH4_1g24410 Fragaria vesca
FvH4_2g15140 Fragaria vesca
FvH4_6g16870 Fragaria vesca
FvH4_7g18330 Fragaria vesca
Glyma.03G186200 Glycine max
Glyma.04G212400 Glycine max
Glyma.05G191800 Glycine max
Glyma.06G154000 Glycine max
Glyma.08G157000 Glycine max
Glyma.10G059900 Glycine max
Glyma.10G197400 Glycine max
Glyma.11G178506 Glycine max
Glyma.13G036800 Glycine max
Glyma.13G146600 Glycine max
Glyma.14G118400 Glycine max
Glyma.19G186300 Glycine max
Glyma.20G192600 Glycine max
Gohir.1Z049395 Gossypium hirsutum
Gohir.A01G142400 Gossypium hirsutum
Gohir.A02G068400 Gossypium hirsutum
Gohir.A04G070300 Gossypium hirsutum
Gohir.A05G384000 Gossypium hirsutum
Gohir.A09G144700 Gossypium hirsutum
Gohir.A10G156500 Gossypium hirsutum
Gohir.A10G200700 Gossypium hirsutum
Gohir.A11G323400 Gossypium hirsutum
Gohir.D01G129900 Gossypium hirsutum
Gohir.D02G074900 Gossypium hirsutum
Gohir.D04G031400 Gossypium hirsutum
Gohir.D04G108800 Gossypium hirsutum
Gohir.D09G140500 Gossypium hirsutum
Gohir.D10G109100 Gossypium hirsutum
Gohir.D10G208501 Gossypium hirsutum
Gohir.D11G342500 Gossypium hirsutum
Gorai.002G160900 Gossypium raimondii
Gorai.005G084300 Gossypium raimondii
Gorai.006G161100 Gossypium raimondii
Gorai.007G372500 Gossypium raimondii
Gorai.009G412800 Gossypium raimondii
Gorai.011G119600 Gossypium raimondii
Gorai.011G234300 Gossypium raimondii
Gorai.012G035500 Gossypium raimondii
GSVIVG01009987001 Vitis vinifera
GSVIVG01016180001 Vitis vinifera
GSVIVG01033681001 Vitis vinifera
HanXRQChr05g0160451 Helianthus annuus
HanXRQChr07g0186201 Helianthus annuus
HanXRQChr08g0218371 Helianthus annuus
HanXRQChr11g0350631 Helianthus annuus
HanXRQChr13g0400711 Helianthus annuus
HanXRQChr15g0484611 Helianthus annuus
Haze_16767 Corylus avellana
Haze_19433 Corylus avellana
Haze_19435 Corylus avellana
Haze_25254 Corylus avellana
Hma1.2p1_0107F.1_g051310 Hydrangea macrophylla
Hma1.2p1_0547F.1_g176520 Hydrangea macrophylla
HPP92_002014 Vanilla planifolia
HPP92_002406 Vanilla planifolia
HPP92_022600 Vanilla planifolia
Hund15208 Selenicereus undatus
Lalb_Chr01g0018591 Lupinus albus
Lalb_Chr04g0263621 Lupinus albus
Lalb_Chr06g0169931 Lupinus albus
Lalb_Chr07g0184401 Lupinus albus
Lalb_Chr08g0238321 Lupinus albus
Lalb_Chr11g0068491 Lupinus albus
Lalb_Chr13g0296601 Lupinus albus
Lalb_Chr20g0112471 Lupinus albus
Lalb_Chr21g0312981 Lupinus albus
Lalb_Chr21g0315101 Lupinus albus
Lj1g0004258 Lotus japonicus
Lj1g0008196 Lotus japonicus
Lj1g0009033 Lotus japonicus
Lj2A118G26 Lonicera japonica
Lj3A937G83 Lonicera japonica
Lj3A990T75 Lonicera japonica
Lj4A839G51 Lonicera japonica
Lj4C689T8 Lonicera japonica
Lj4g0015238 Lotus japonicus
Lj4P837T11 Lonicera japonica
Lj5g0018304 Lotus japonicus
Lj5g0027747 Lotus japonicus
Lsat_1_v5_gn_1_51321 Lactuca sativa
Lsat_1_v5_gn_2_19161 Lactuca sativa
Lsat_1_v5_gn_4_135940 Lactuca sativa
Lsat_1_v5_gn_6_28421 Lactuca sativa
Lsat_1_v5_gn_6_97301 Lactuca sativa
Lsat_1_v5_gn_8_18500 Lactuca sativa
Manes.07G133300 Manihot esculenta
Manes.08G013100 Manihot esculenta
Manes.08G013200 Manihot esculenta
Manes.09G062000 Manihot esculenta
Manes.10G052100 Manihot esculenta
Manes.12G156300 Manihot esculenta
Manes.18G085300 Manihot esculenta
Mapoly0167s0019 Marchantia polymorpha
MBI03_g42545_MAGBIO Magnolia biondii
MBI06_g27442_MAGBIO Magnolia biondii
MBI17_g37736_MAGBIO Magnolia biondii
MCO05G335 Micromonas commoda
MD00G1163000 Malus domestica
MD01G1005500 Malus domestica
MD01G1099300 Malus domestica
MD04G1088900 Malus domestica
MD05G1010800 Malus domestica
MD07G1166100 Malus domestica
MD10G1009500 Malus domestica
MD12G1106600 Malus domestica
Medtr1g029450 Medicago truncatula
Medtr1g062760 Medicago truncatula
Medtr1g090717 Medicago truncatula
Medtr3g096350 Medicago truncatula
Medtr7g103070 Medicago truncatula
Medtr8g093740 Medicago truncatula
MELO3C009380.2 Cucumis melo
MELO3C011704.2 Cucumis melo
MELO3C019844.2 Cucumis melo
MELO3C023233.2 Cucumis melo
MELO3C025015.2 Cucumis melo
Migut.F01915 Erythranthe guttata
Migut.J00454 Erythranthe guttata
Migut.N03248 Erythranthe guttata
MSTRG.19188 Avicennia marina
MSTRG.20580 Avicennia marina
MSTRG.24181 Avicennia marina
MSTRG.26677 Avicennia marina
MSTRG.5775 Avicennia marina
MSTRG.9136 Avicennia marina
Nitab4.5_0000174g0160 Nicotiana tabacum
Nitab4.5_0000349g0020 Nicotiana tabacum
Nitab4.5_0000527g0050 Nicotiana tabacum
Nitab4.5_0001461g0030 Nicotiana tabacum
Nitab4.5_0002373g0060 Nicotiana tabacum
Nitab4.5_0003314g0070 Nicotiana tabacum
Nitab4.5_0009822g0020 Nicotiana tabacum
Nitab4.5_0014777g0010 Nicotiana tabacum
Nn1g06274 Nelumbo nucifera
Nn2g13860 Nelumbo nucifera
Nn5g28533 Nelumbo nucifera
Nn6g35219 Nelumbo nucifera
Oeu016294.1 Olea europaea
Oeu040576.1 Olea europaea
Oeu045239.3 Olea europaea
Oeu064155.1 Olea europaea
Os03g0146000 Oryza sativa ssp. japonica
Os10g0456600 Oryza sativa ssp. japonica
Peaxi162Scf00066g01712 Petunia axillaris
Peaxi162Scf00658g00009 Petunia axillaris
Peaxi162Scf01105g00008 Petunia axillaris
Peaxi162Scf01128g00111 Petunia axillaris
PGR004G2040 Punica granatum
PGR042G1832 Punica granatum
PGR044G0386 Punica granatum
PGR142G1814 Punica granatum
PGSC0003DMG400003898 Solanum tuberosum
PGSC0003DMG400019161 Solanum tuberosum
PGSC0003DMG400024823 Solanum tuberosum
PGSC0003DMG401031064 Solanum tuberosum
Phvul.001G064800 Phaseolus vulgaris
Phvul.001G181300 Phaseolus vulgaris
Phvul.002G272200 Phaseolus vulgaris
Phvul.007G140166 Phaseolus vulgaris
Phvul.007G151900 Phaseolus vulgaris
Phvul.009G151300 Phaseolus vulgaris
Potri.002G074400 Populus trichocarpa
Potri.005G063500 Populus trichocarpa
Potri.006G121400 Populus trichocarpa
Potri.007G105500 Populus trichocarpa
Potri.008G032000 Populus trichocarpa
Potri.010G229600 Populus trichocarpa
Potri.016G097800 Populus trichocarpa
Pp3c10_2770 Physcomitrium patens
Pp3c16_12190 Physcomitrium patens
Pp3c1_26930 Physcomitrium patens
Pp3c27_4610 Physcomitrium patens
Pp3c2_19550 Physcomitrium patens
Pp3c5_3390 Physcomitrium patens
PRCOL_00005062 Prasinoderma coloniale
Prupe.2G205300 Prunus persica
Prupe.4G271600 Prunus persica
Prupe.7G125400 Prunus persica
Prupe.8G013500 Prunus persica
Psat3g040440 Pisum sativum
Psat5g062120 Pisum sativum
Psat6g039720 Pisum sativum
Psat6g075960 Pisum sativum
Psat6g172840 Pisum sativum
Psat7g046000 Pisum sativum
PSO063G5096 Papaver somniferum
PSO170G4383 Papaver somniferum
PSO339G2286 Papaver somniferum
PSO339G5745 Papaver somniferum
PSO528G0023 Papaver somniferum
PSO801G0530 Papaver somniferum
QL04p079743 Quercus lobata
QL07p042278 Quercus lobata
QL08p053209 Quercus lobata
QL09p029466 Quercus lobata
QL10p043466 Quercus lobata
RcHm_v2.0_Chr1g0362041 Rosa chinensis
RcHm_v2.0_Chr2g0121291 Rosa chinensis
RcHm_v2.0_Chr3g0470891 Rosa chinensis
RcHm_v2.0_Chr5g0009971 Rosa chinensis
RcHm_v2.0_Chr5g0067631 Rosa chinensis
RcHm_v2.0_Chr6g0277801 Rosa chinensis
RcHm_v2.0_Chr6g0290691 Rosa chinensis
Rhsim03G0089100 Rhododendron simsii
Rhsim03G0112200 Rhododendron simsii
Rhsim11G0075300 Rhododendron simsii
RhsimUnG0004300 Rhododendron simsii
RhsimUnG0067700 Rhododendron simsii
Sabra05G0052700 Salix brachista
Sabra06G0095600 Salix brachista
Sabra07G0086300 Salix brachista
Sabra08G0021000 Salix brachista
Sabra10G0178100 Salix brachista
SalBow3G0126 Salvia bowleyana
SalBow3G2043 Salvia bowleyana
SalBow6G0492 Salvia bowleyana
Sc02g0001410 Simmondsia chinensis
Sc09g0005910 Simmondsia chinensis
Sc16g0003830 Simmondsia chinensis
Sc20g0005680 Simmondsia chinensis
Sed0002638 Sechium edule
Sed0006232 Sechium edule
Sed0021218 Sechium edule
Sed0023773 Sechium edule
Sed0028200 Sechium edule
SEGI_01036 Sequoiadendron giganteum
SEGI_20689 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06514 Striga asiatica
SGA_v2.0_scaffold19G08625 Striga asiatica
SGA_v2.0_scaffold25G11148 Striga asiatica
SHI28252 Sapria himalayana
SMO147G0012 Selaginella moellendorffii
Solyc04g064510.3 Solanum lycopersicum
Solyc09g008460.3 Solanum lycopersicum
Solyc10g086310.1 Solanum lycopersicum
Solyc11g008020.2 Solanum lycopersicum
Sopen04g026460 Solanum pennellii
Sopen09g003290 Solanum pennellii
Sopen11g003880 Solanum pennellii
Sp1g33180 Schrenkiella parvula
Sp3g08260 Schrenkiella parvula
Sp6g39220 Schrenkiella parvula
TAR381G0489 Trochodendron aralioides
TAR623G1354 Trochodendron aralioides
TAR625G1527 Trochodendron aralioides
TAR628G1602 Trochodendron aralioides
TAR633G0791 Trochodendron aralioides
TAR636G1604 Trochodendron aralioides
THA.LOC104806841 Tarenaya hassleriana
THA.LOC104816361 Tarenaya hassleriana
THA.LOC104820481 Tarenaya hassleriana
THA.LOC104826921 Tarenaya hassleriana
Thecc.01G133300 Theobroma cacao
Thecc.05G071500 Theobroma cacao
Thecc.05G071800 Theobroma cacao
Thecc.08G139300 Theobroma cacao
Thecc.10G088500 Theobroma cacao
Thhalv10011775m.g Eutrema salsugineum
Thhalv10014668m.g Eutrema salsugineum
Thhalv10022225m.g Eutrema salsugineum
TPR.G21018 Trifolium pratense
TPR.G28235 Trifolium pratense
TPR.G33307 Trifolium pratense
TPR.G37417 Trifolium pratense
TPR.G37748 Trifolium pratense
TPR.G8696 Trifolium pratense
TWI15G0889 Tripterygium wilfordii
TWI34G0732 Tripterygium wilfordii
TWI38G1883 Tripterygium wilfordii
TWI53G1800 Tripterygium wilfordii
TWI74G0278 Tripterygium wilfordii
TWI74G1653 Tripterygium wilfordii
TWI79G1372 Tripterygium wilfordii
unitig_27.g25383 Utricularia gibba
unitig_578.g15788 Utricularia gibba
unitig_8.g4117 Utricularia gibba
vmacro00883 Vaccinium macrocarpon
vmacro07194 Vaccinium macrocarpon
vmacro07319 Vaccinium macrocarpon
vmacro08796 Vaccinium macrocarpon
VMungo0251G3247 Vigna mungo
VMungo0647G0895 Vigna mungo
VMungo0720G2937 Vigna mungo
VMungo1383G1349 Vigna mungo
Zm00001eb046750 Zea mays
Zm00001eb076640 Zea mays
Zm00001eb222340 Zea mays
Zm00001eb402970 Zea mays
Zm00001eb434560 Zea mays

User provided reference genes

Program Settings