Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p16990 Brassica napus
A02p11570 Brassica napus
A03p45000 Brassica napus
A08p01700 Brassica napus
A10p20290 Brassica napus
Aa31LG10G1880 Aethionema arabicum
Aa31LG3G9100 Aethionema arabicum
Aa31LG4G4470 Aethionema arabicum
Aa31LG6G9930 Aethionema arabicum
Aa31LG8G11670 Aethionema arabicum
Actinidia08594 Actinidia chinensis
Actinidia10973 Actinidia chinensis
Actinidia18793 Actinidia chinensis
Actinidia20072 Actinidia chinensis
Actinidia27191 Actinidia chinensis
Actinidia34168 Actinidia chinensis
Actinidia35219 Actinidia chinensis
Ah.03g146830 Amaranthus hybridus
Ah.04g161960 Amaranthus hybridus
Ah.04g164400 Amaranthus hybridus
AL1G61690 Arabidopsis lyrata
AL3G45470 Arabidopsis lyrata
AL6G30900 Arabidopsis lyrata
AL7G27290 Arabidopsis lyrata
AL8G27310 Arabidopsis lyrata
Aqoxy2G00380 Aquilegia oxysepala
Aqoxy4G00414 Aquilegia oxysepala
Aqoxy6G00272 Aquilegia oxysepala
Aqoxy7G00198 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.322AAU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NZNX6H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V6Y89Z Arachis hypogaea
AT1G53270 Arabidopsis thaliana
AT2G13610 Arabidopsis thaliana
AT4G25750 Arabidopsis thaliana
AT5G19410 Arabidopsis thaliana
AT5G52860 Arabidopsis thaliana
ATR0602G209 Amborella trichopoda
ATR0745G015 Amborella trichopoda
ATR0776G075 Amborella trichopoda
ATR1131G055 Amborella trichopoda
Atru.chr1.330 Acer truncatum
Atru.chr2.2209 Acer truncatum
Atru.chr3.2898 Acer truncatum
Atru.chr4.867 Acer truncatum
Atru.chr6.2809 Acer truncatum
AUR62000190 Chenopodium quinoa
AUR62003586 Chenopodium quinoa
AUR62006540 Chenopodium quinoa
AUR62017899 Chenopodium quinoa
AUR62019532 Chenopodium quinoa
AUR62021088 Chenopodium quinoa
AUR62031445 Chenopodium quinoa
AUR62036105 Chenopodium quinoa
AUR62043559 Chenopodium quinoa
BcaB04g17094 Brassica carinata
BcaB04g17096 Brassica carinata
BcaB05g21987 Brassica carinata
BcaB08g34541 Brassica carinata
BcaC01g01373 Brassica carinata
BcaC01g03119 Brassica carinata
BcaC03g13675 Brassica carinata
BcaC03g14493 Brassica carinata
BcaC04g24230 Brassica carinata
BcaC04g24231 Brassica carinata
BcaC04g24232 Brassica carinata
BcaC09g50749 Brassica carinata
BcaNung04117 Brassica carinata
BolC1t02054H Brassica oleracea
BolC2t08065H Brassica oleracea
BolC3t17868H Brassica oleracea
BolC3t21446H Brassica oleracea
BolC9t58543H Brassica oleracea
BraA01t01655Z Brassica rapa
BraA02t06219Z Brassica rapa
BraA03t13636Z Brassica rapa
BraA08t32223Z Brassica rapa
BraA10t44100Z Brassica rapa
C01p21310 Brassica napus
C02p19290 Brassica napus
C03p55880 Brassica napus
C03p91310 Brassica napus
C09p56890 Brassica napus
CAN.G1156.45 Capsicum annuum
CAN.G126.8 Capsicum annuum
CAN.G162.18 Capsicum annuum
CAN.G456.25 Capsicum annuum
CAN.G853.32 Capsicum annuum
CANSAT01G2437 Cannabis sativa
CANSAT35G1326 Cannabis sativa
CANSAT54G1983 Cannabis sativa
CANSAT64G1754 Cannabis sativa
CANSAT64G1879 Cannabis sativa
CARHR043500 Cardamine hirsuta
CARHR104790 Cardamine hirsuta
CARHR193540 Cardamine hirsuta
CARHR233200 Cardamine hirsuta
CARHR265800 Cardamine hirsuta
Carub.0001s4245 Capsella rubella
Carub.0003s2814 Capsella rubella
Carub.0006s1775 Capsella rubella
Carub.0007s1521 Capsella rubella
Carub.0008s1302 Capsella rubella
Ca_04002_v3 Cicer arietinum L.
Ca_10710_v3 Cicer arietinum L.
Ca_16954_v3 Cicer arietinum L.
Ca_17630_v3 Cicer arietinum L.
Cc00_g20000 Coffea canephora
Cc05_g08210 Coffea canephora
Cc05_g11300 Coffea canephora
Cc07_g18780 Coffea canephora
Cc09_g08420 Coffea canephora
CDE02G2802 Ceratophyllum demersum
CDE06G2763 Ceratophyllum demersum
CDE08G0436 Ceratophyllum demersum
CDE09G0509 Ceratophyllum demersum
Cfa002910 Carpinus fangiana
Cfa009852 Carpinus fangiana
Cfa016318 Carpinus fangiana
Cfa019586 Carpinus fangiana
Cfa022941 Carpinus fangiana
Ciclev10000557m.g Citrus clementina
Ciclev10004505m.g Citrus clementina
Ciclev10010503m.g Citrus clementina
Ciclev10017566m.g Citrus clementina
Ciclev10024157m.g Citrus clementina
CiPaw.03G120200 Carya illinoinensis
CiPaw.03G187100 Carya illinoinensis
CiPaw.04G081500 Carya illinoinensis
CiPaw.08G119000 Carya illinoinensis
CiPaw.11G162200 Carya illinoinensis
CiPaw.12G114500 Carya illinoinensis
CiPaw.13G150700 Carya illinoinensis
ClCG02G000400 Citrullus lanatus
ClCG02G022850 Citrullus lanatus
ClCG05G008520 Citrullus lanatus
ClCG07G010340 Citrullus lanatus
ClCG09G011400 Citrullus lanatus
COL.COLO4_17594 Corchorus olitorius
COL.COLO4_30275 Corchorus olitorius
COL.COLO4_32759 Corchorus olitorius
COL.COLO4_33548 Corchorus olitorius
COL.COLO4_33564 Corchorus olitorius
COL.COLO4_35766 Corchorus olitorius
Cpa.g.sc131.57 Carica papaya
Cpa.g.sc157.65 Carica papaya
Cpa.g.sc3.5 Carica papaya
Cpa.g.sc42.170 Carica papaya
CsaV3_2G019440 Cucumis sativus L.
CsaV3_3G017610 Cucumis sativus L.
CsaV3_4G007990 Cucumis sativus L.
CsaV3_6G038990 Cucumis sativus L.
CSS0001149 Camellia sinensis var. sinensis
CSS0003208 Camellia sinensis var. sinensis
CSS0007388 Camellia sinensis var. sinensis
CSS0009936 Camellia sinensis var. sinensis
CSS0018781 Camellia sinensis var. sinensis
CSS0042226 Camellia sinensis var. sinensis
CSS0042981 Camellia sinensis var. sinensis
DCAR_009770 Daucus carota
DCAR_010649 Daucus carota
DCAR_014330 Daucus carota
DCAR_017164 Daucus carota
DCAR_024409 Daucus carota
Dinv07103 Davidia involucrata
Dinv14975 Davidia involucrata
Dinv15456 Davidia involucrata
Dinv24385 Davidia involucrata
Dinv36167 Davidia involucrata
Duzib084G1201 Durio zibethinus
Duzib168G1227 Durio zibethinus
Duzib187G1390 Durio zibethinus
Duzib187G1633 Durio zibethinus
Duzib205G0134 Durio zibethinus
Duzib213G0961 Durio zibethinus
Duzib264G0175 Durio zibethinus
ECA233G2872 Erigeron canadensis
ECA240G4725 Erigeron canadensis
ECA248G2355 Erigeron canadensis
EL10Ac3g05386 Beta vulgaris
EL10Ac4g08305 Beta vulgaris
EL10Ac4g10144 Beta vulgaris
EL10Ac6g15288 Beta vulgaris
Eucgr.A02688 Eucalyptus grandis
Eucgr.F03258 Eucalyptus grandis
Eucgr.I00190 Eucalyptus grandis
Eucgr.J00695 Eucalyptus grandis
FAN04G2544 Fragaria x ananassa
FAN05G4488 Fragaria x ananassa
FAN11G1730 Fragaria x ananassa
FAN14G3998 Fragaria x ananassa
FAN15G1406 Fragaria x ananassa
FAN16G0086 Fragaria x ananassa
FAN19G2685 Fragaria x ananassa
FAN21G1874 Fragaria x ananassa
FAN23G2470 Fragaria x ananassa
FAN24G2635 Fragaria x ananassa
FAN25G3478 Fragaria x ananassa
FAN26G0224 Fragaria x ananassa
FAN27G1911 Fragaria x ananassa
FAN28G2810 Fragaria x ananassa
FvH4_1g24520 Fragaria vesca
FvH4_2g03830 Fragaria vesca
FvH4_3g18590 Fragaria vesca
FvH4_5g29200 Fragaria vesca
FvH4_6g27140 Fragaria vesca
Glyma.04G211800 Glycine max
Glyma.05G192700 Glycine max
Glyma.06G154500 Glycine max
Glyma.07G231400 Glycine max
Glyma.08G000800 Glycine max
Glyma.10G229800 Glycine max
Glyma.12G228500 Glycine max
Glyma.13G271300 Glycine max
Glyma.20G040400 Glycine max
Glyma.20G163500 Glycine max
Gohir.A01G057000 Gossypium hirsutum
Gohir.A05G383300 Gossypium hirsutum
Gohir.A09G002000 Gossypium hirsutum
Gohir.A09G110300 Gossypium hirsutum
Gohir.A11G224800 Gossypium hirsutum
Gohir.D01G043400 Gossypium hirsutum
Gohir.D04G032000 Gossypium hirsutum
Gohir.D09G001700 Gossypium hirsutum
Gohir.D09G106600 Gossypium hirsutum
Gorai.002G062500 Gossypium raimondii
Gorai.003G070300 Gossypium raimondii
Gorai.006G001900 Gossypium raimondii
Gorai.006G124200 Gossypium raimondii
Gorai.012G036300 Gossypium raimondii
GSVIVG01014222001 Vitis vinifera
GSVIVG01020687001 Vitis vinifera
GSVIVG01022346001 Vitis vinifera
GSVIVG01028809001 Vitis vinifera
GSVIVG01037274001 Vitis vinifera
HanXRQChr01g0019031 Helianthus annuus
HanXRQChr01g0023941 Helianthus annuus
HanXRQChr13g0389101 Helianthus annuus
HanXRQChr13g0392401 Helianthus annuus
HanXRQChr17g0556761 Helianthus annuus
HanXRQChr17g0557901 Helianthus annuus
Haze_00072 Corylus avellana
Haze_09344 Corylus avellana
Haze_13353 Corylus avellana
Haze_23228 Corylus avellana
Haze_25267 Corylus avellana
Haze_25269 Corylus avellana
Hma1.2p1_0142F.1_g064470 Hydrangea macrophylla
Hma1.2p1_0539F.1_g174570 Hydrangea macrophylla
Hma1.2p1_0607F.1_g188120 Hydrangea macrophylla
HPP92_005258 Vanilla planifolia
HPP92_008178 Vanilla planifolia
HPP92_013700 Vanilla planifolia
HPP92_025182 Vanilla planifolia
HPP92_025183 Vanilla planifolia
Hund04472 Selenicereus undatus
Lalb_Chr02g0141291 Lupinus albus
Lalb_Chr05g0217901 Lupinus albus
Lalb_Chr07g0184361 Lupinus albus
Lalb_Chr12g0203121 Lupinus albus
Lalb_Chr13g0296621 Lupinus albus
Lalb_Chr20g0109361 Lupinus albus
Lalb_Chr25g0285971 Lupinus albus
Lj1P1008T33 Lonicera japonica
Lj2P746T20 Lonicera japonica
Lj3g0004233 Lotus japonicus
Lj4g0009753 Lotus japonicus
Lj4P835T16 Lonicera japonica
Lj5g0025284 Lotus japonicus
Lj6g0007367 Lotus japonicus
Lj7C104T1 Lonicera japonica
Lj7P104T5 Lonicera japonica
Lj8C103T22 Lonicera japonica
Lj8P150T29 Lonicera japonica
Lsat_1_v5_gn_1_78641 Lactuca sativa
Lsat_1_v5_gn_1_82081 Lactuca sativa
Lsat_1_v5_gn_8_138961 Lactuca sativa
Lsat_1_v5_gn_8_140280 Lactuca sativa
Lsat_1_v5_gn_8_6380 Lactuca sativa
Manes.02G139500 Manihot esculenta
Manes.06G154000 Manihot esculenta
Manes.12G157000 Manihot esculenta
Manes.13G085800 Manihot esculenta
Manes.13G137700 Manihot esculenta
Manes.15G092400 Manihot esculenta
Mapoly0015s0086 Marchantia polymorpha
MBI06_g25993_MAGBIO Magnolia biondii
MBI07_g11736_MAGBIO Magnolia biondii
MBI13_g41606_MAGBIO Magnolia biondii
MD01G1210800 Malus domestica
MD03G1240800 Malus domestica
MD07G1281200 Malus domestica
MD11G1185400 Malus domestica
MD11G1260200 Malus domestica
MD15G1134300 Malus domestica
Medtr1g099570 Medicago truncatula
Medtr2g078080 Medicago truncatula
Medtr3g040670 Medicago truncatula
Medtr3g096410 Medicago truncatula
Medtr4g116540 Medicago truncatula
Medtr8g093840 Medicago truncatula
MELO3C006947.2 Cucumis melo
MELO3C031081.2 Cucumis melo
MELO3C032789.2 Cucumis melo
Migut.H00691 Erythranthe guttata
Migut.J00277 Erythranthe guttata
Migut.M00255 Erythranthe guttata
MSTRG.12825 Avicennia marina
MSTRG.19059 Avicennia marina
MSTRG.23464 Avicennia marina
MSTRG.27072 Avicennia marina
Nitab4.5_0000246g0130 Nicotiana tabacum
Nitab4.5_0000472g0320 Nicotiana tabacum
Nitab4.5_0000496g0120 Nicotiana tabacum
Nitab4.5_0000642g0210 Nicotiana tabacum
Nitab4.5_0003827g0010 Nicotiana tabacum
Nitab4.5_0004644g0020 Nicotiana tabacum
Nitab4.5_0006023g0010 Nicotiana tabacum
Nitab4.5_0006539g0040 Nicotiana tabacum
Nitab4.5_0007672g0010 Nicotiana tabacum
Nitab4.5_0010797g0020 Nicotiana tabacum
Nn1g04388 Nelumbo nucifera
Nn1g09083 Nelumbo nucifera
Nn5g28507 Nelumbo nucifera
Nn7g36705 Nelumbo nucifera
Nn7g36723 Nelumbo nucifera
Nn8g40391 Nelumbo nucifera
Oeu004236.1 Olea europaea
Oeu030558.1 Olea europaea
Oeu032704.1 Olea europaea
Oeu037145.1 Olea europaea
Oeu051121.1 Olea europaea
Oeu058293.1 Olea europaea
Os01g0615500 Oryza sativa ssp. japonica
Os04g0693300 Oryza sativa ssp. japonica
Os05g0384600 Oryza sativa ssp. japonica
Os06g0503100 Oryza sativa ssp. japonica
Peaxi162Scf00006g00511 Petunia axillaris
Peaxi162Scf00017g00225 Petunia axillaris
Peaxi162Scf00057g00011 Petunia axillaris
Peaxi162Scf00069g00212 Petunia axillaris
Peaxi162Scf00469g00135 Petunia axillaris
Peaxi162Scf00469g00136 Petunia axillaris
PGR031G0174 Punica granatum
PGR042G0156 Punica granatum
PGR042G3949 Punica granatum
PGR119G0185 Punica granatum
PGR119G1450 Punica granatum
PGSC0003DMG400012432 Solanum tuberosum
PGSC0003DMG400020447 Solanum tuberosum
PGSC0003DMG400020888 Solanum tuberosum
PGSC0003DMG400023322 Solanum tuberosum
PGSC0003DMG400024466 Solanum tuberosum
Phvul.002G273300 Phaseolus vulgaris
Phvul.005G067600 Phaseolus vulgaris
Phvul.006G013900 Phaseolus vulgaris
Phvul.007G075700 Phaseolus vulgaris
Phvul.009G156100 Phaseolus vulgaris
Potri.001G393300 Populus trichocarpa
Potri.005G064300 Populus trichocarpa
Potri.007G104801 Populus trichocarpa
Potri.009G070100 Populus trichocarpa
Potri.011G112100 Populus trichocarpa
Potri.013G117700 Populus trichocarpa
Potri.015G027600 Populus trichocarpa
Pp3c12_11190 Physcomitrium patens
Pp3c26_3590 Physcomitrium patens
Pp3c3_34730 Physcomitrium patens
Pp3c5_16290 Physcomitrium patens
Pp3c8_1580 Physcomitrium patens
Prupe.2G303100 Prunus persica
Prupe.3G122400 Prunus persica
Prupe.4G168100 Prunus persica
Prupe.4G266200 Prunus persica
Prupe.4G272400 Prunus persica
Psat5g061320 Pisum sativum
Psat5g187400 Pisum sativum
Psat5g237880 Pisum sativum
Psat6g195440 Pisum sativum
Psat7g045120 Pisum sativum
PSO135G0194 Papaver somniferum
PSO170G1338 Papaver somniferum
PSO384G3875 Papaver somniferum
PSO384G5042 Papaver somniferum
PSO528G0021 Papaver somniferum
PSO541G0874 Papaver somniferum
PSO675G6370 Papaver somniferum
QL01p017183 Quercus lobata
QL08p026741 Quercus lobata
QL08p041426 Quercus lobata
QL08p041434 Quercus lobata
QL09p012182 Quercus lobata
QL10p043103 Quercus lobata
RcHm_v2.0_Chr1g0332261 Rosa chinensis
RcHm_v2.0_Chr1g0332271 Rosa chinensis
RcHm_v2.0_Chr1g0332281 Rosa chinensis
RcHm_v2.0_Chr1g0378951 Rosa chinensis
RcHm_v2.0_Chr2g0121921 Rosa chinensis
RcHm_v2.0_Chr2g0121931 Rosa chinensis
RcHm_v2.0_Chr2g0129131 Rosa chinensis
RcHm_v2.0_Chr5g0031401 Rosa chinensis
RcHm_v2.0_Chr7g0221951 Rosa chinensis
Rhsim01G0195700 Rhododendron simsii
Rhsim03G0195400 Rhododendron simsii
Rhsim06G0132900 Rhododendron simsii
Rhsim10G0132900 Rhododendron simsii
Sabra05G0053600 Salix brachista
Sabra07G0085800 Salix brachista
Sabra09G0053000 Salix brachista
Sabra11G0099300 Salix brachista
Sabra13G0099700 Salix brachista
Sabra15G0022900 Salix brachista
Sabra16G0257900 Salix brachista
SalBow1G5849 Salvia bowleyana
SalBow8G3471 Salvia bowleyana
Sc03g0010450 Simmondsia chinensis
Sc06g0008040 Simmondsia chinensis
Sc16g0003850 Simmondsia chinensis
Sc25g0000740 Simmondsia chinensis
Sed0005042 Sechium edule
Sed0005579 Sechium edule
Sed0010593 Sechium edule
Sed0012186 Sechium edule
Sed0028186 Sechium edule
SEGI_03560 Sequoiadendron giganteum
SEGI_33749 Sequoiadendron giganteum
SEGI_36713 Sequoiadendron giganteum
SGA_v2.0_scaffold192G40615 Striga asiatica
SGA_v2.0_scaffold20G09029 Striga asiatica
SGA_v2.0_scaffold73G24196 Striga asiatica
SGA_v2.0_scaffold85G26823 Striga asiatica
SMO115G0157 Selaginella moellendorffii
SMO340G0012 Selaginella moellendorffii
Solyc03g007690.1 Solanum lycopersicum
Solyc03g113690.1 Solanum lycopersicum
Solyc05g056470.1 Solanum lycopersicum
Solyc07g053300.1 Solanum lycopersicum
Solyc07g062630.1 Solanum lycopersicum
Sopen03g003620 Solanum pennellii
Sopen03g032740 Solanum pennellii
Sopen05g034860 Solanum pennellii
Sopen07g027260 Solanum pennellii
Sopen07g030860 Solanum pennellii
Sp1g39850 Schrenkiella parvula
Sp3g27010 Schrenkiella parvula
Sp6g15020 Schrenkiella parvula
Sp6g25000 Schrenkiella parvula
Sp7g23780 Schrenkiella parvula
TAR374G0872 Trochodendron aralioides
TAR375G0448 Trochodendron aralioides
TAR381G0101 Trochodendron aralioides
TAR624G0953 Trochodendron aralioides
TAR624G0968 Trochodendron aralioides
TAR625G0940 Trochodendron aralioides
TAR627G0938 Trochodendron aralioides
TAR636G0835 Trochodendron aralioides
THA.LOC104800279 Tarenaya hassleriana
THA.LOC104804404 Tarenaya hassleriana
THA.LOC104804478 Tarenaya hassleriana
THA.LOC104804849 Tarenaya hassleriana
THA.LOC104824624 Tarenaya hassleriana
THA.LOC104825118 Tarenaya hassleriana
Thecc.01G134500 Theobroma cacao
Thecc.01G148800 Theobroma cacao
Thecc.03G187000 Theobroma cacao
Thecc.07G106600 Theobroma cacao
Thecc.09G248600 Theobroma cacao
Thhalv10011974m.g Eutrema salsugineum
Thhalv10012962m.g Eutrema salsugineum
Thhalv10013050m.g Eutrema salsugineum
Thhalv10022588m.g Eutrema salsugineum
Thhalv10026876m.g Eutrema salsugineum
TPR.G24391 Trifolium pratense
TPR.G28226 Trifolium pratense
TPR.G37409 Trifolium pratense
TPR.G7763 Trifolium pratense
TPR.G9218 Trifolium pratense
TWI23G0277 Tripterygium wilfordii
TWI23G1016 Tripterygium wilfordii
TWI31G0120 Tripterygium wilfordii
TWI39G0765 Tripterygium wilfordii
TWI79G1487 Tripterygium wilfordii
unitig_736.g22675 Utricularia gibba
unitig_736.g22676 Utricularia gibba
unitig_899.g14677 Utricularia gibba
unitig_92.g28262 Utricularia gibba
vmacro06603 Vaccinium macrocarpon
vmacro09500 Vaccinium macrocarpon
vmacro12789 Vaccinium macrocarpon
vmacro14279 Vaccinium macrocarpon
VMungo0251G0944 Vigna mungo
VMungo0540G2284 Vigna mungo
VMungo0720G0767 Vigna mungo
VMungo1080G0155 Vigna mungo
VMungo1309G1155 Vigna mungo
Zm00001eb162070 Zea mays
Zm00001eb286950 Zea mays
Zm00001eb343070 Zea mays
Zm00001eb358180 Zea mays
Zm00001eb372940 Zea mays
Zm00001eb434550 Zea mays

User provided reference genes

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