Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12970 Brassica napus
A03p52870 Brassica napus
A05p24840 Brassica napus
A09p33740 Brassica napus
A10p20080 Brassica napus
Aa31LG1G8660 Aethionema arabicum
Aa31LG2G13510 Aethionema arabicum
Aa31LG6G3660 Aethionema arabicum
Actinidia03388 Actinidia chinensis
Actinidia05804 Actinidia chinensis
Actinidia06313 Actinidia chinensis
Actinidia06868 Actinidia chinensis
Actinidia09226 Actinidia chinensis
Actinidia14822 Actinidia chinensis
Actinidia16284 Actinidia chinensis
Ah.04g161680 Amaranthus hybridus
Ah.05g174490 Amaranthus hybridus
Ah.05g177460 Amaranthus hybridus
Ah.05g177470 Amaranthus hybridus
Ah.07g200180 Amaranthus hybridus
Ah.12g054840 Amaranthus hybridus
AL1G46680 Arabidopsis lyrata
AL6G31150 Arabidopsis lyrata
AL7G32290 Arabidopsis lyrata
Aqoxy3G02470 Aquilegia oxysepala
Aqoxy7G00680 Aquilegia oxysepala
Aqoxy7G03369 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.08RSMA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B2S0ZF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CDI55T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DGS72K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JGU2U8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JNL70L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M42AW0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YRJ0LE Arachis hypogaea
AT1G32450 Arabidopsis thaliana
AT4G21680 Arabidopsis thaliana
AT5G19640 Arabidopsis thaliana
ATR0049G004 Amborella trichopoda
ATR0605G186 Amborella trichopoda
ATR0789G180 Amborella trichopoda
Atru.chr3.2416 Acer truncatum
Atru.chr5.17 Acer truncatum
Atru.chr5.283 Acer truncatum
Atru.chr6.1760 Acer truncatum
AUR62004191 Chenopodium quinoa
AUR62007260 Chenopodium quinoa
AUR62013653 Chenopodium quinoa
AUR62013654 Chenopodium quinoa
AUR62013812 Chenopodium quinoa
AUR62018738 Chenopodium quinoa
AUR62023343 Chenopodium quinoa
AUR62023344 Chenopodium quinoa
AUR62030365 Chenopodium quinoa
AUR62040848 Chenopodium quinoa
BcaB03g13733 Brassica carinata
BcaB05g23401 Brassica carinata
BcaB07g32927 Brassica carinata
BcaC01g00685 Brassica carinata
BcaC05g27281 Brassica carinata
BcaC05g27857 Brassica carinata
BcaC06g30672 Brassica carinata
BcaNung00844 Brassica carinata
BcaNung02770 Brassica carinata
BolC1t01517H Brassica oleracea
BolC5t31917H Brassica oleracea
BolC5t32590H Brassica oleracea
BolC7t45631H Brassica oleracea
BolC9t58520H Brassica oleracea
BraA01t01241Z Brassica rapa
BraA03t14363Z Brassica rapa
BraA05t21371Z Brassica rapa
BraA09t38923Z Brassica rapa
BraA10t44082Z Brassica rapa
C01p15640 Brassica napus
C05p31890 Brassica napus
C05p38550 Brassica napus
C07p51310 Brassica napus
C09p56550 Brassica napus
CAN.G109.1 Capsicum annuum
CAN.G1480.8 Capsicum annuum
CAN.G362.27 Capsicum annuum
CAN.G388.32 Capsicum annuum
CAN.G799.1 Capsicum annuum
CAN.G799.4 Capsicum annuum
CAN.G845.31 Capsicum annuum
CANSAT01G1313 Cannabis sativa
CANSAT21G1273 Cannabis sativa
CANSAT25G1816 Cannabis sativa
CANSAT25G3034 Cannabis sativa
CANSAT54G0900 Cannabis sativa
CANSAT56G2369 Cannabis sativa
CARHR031900 Cardamine hirsuta
CARHR193270 Cardamine hirsuta
CARHR228400 Cardamine hirsuta
Carub.0001s3087 Capsella rubella
Carub.0006s1799 Capsella rubella
Carub.0007s1973 Capsella rubella
Ca_06525_v3 Cicer arietinum L.
Ca_11414_v3 Cicer arietinum L.
Ca_19914_v3 Cicer arietinum L.
Ca_19917_v3 Cicer arietinum L.
Ca_19943_v3 Cicer arietinum L.
Ca_22057_v3 Cicer arietinum L.
Ca_24640_v3 Cicer arietinum L.
Cc01_g05330 Coffea canephora
Cc02_g24100 Coffea canephora
Cc02_g25980 Coffea canephora
Cc08_g02340 Coffea canephora
CDE04G2502 Ceratophyllum demersum
CDE10G0202 Ceratophyllum demersum
CDE11G0309 Ceratophyllum demersum
CDE12G0251 Ceratophyllum demersum
CDE12G0879 Ceratophyllum demersum
Cfa009654 Carpinus fangiana
Cfa011001 Carpinus fangiana
Ciclev10018037m.g Citrus clementina
Ciclev10023644m.g Citrus clementina
Ciclev10024592m.g Citrus clementina
Ciclev10031017m.g Citrus clementina
CiPaw.11G089900 Carya illinoinensis
CiPaw.12G061500 Carya illinoinensis
CiPaw.13G020300 Carya illinoinensis
CiPaw.13G169900 Carya illinoinensis
CiPaw.14G014200 Carya illinoinensis
CiPaw.14G014300 Carya illinoinensis
CiPaw.14G129200 Carya illinoinensis
ClCG00G003510 Citrullus lanatus
ClCG03G013740 Citrullus lanatus
ClCG05G002720 Citrullus lanatus
ClCG06G000470 Citrullus lanatus
ClCG09G012240 Citrullus lanatus
ClCG10G001840 Citrullus lanatus
COL.COLO4_10401 Corchorus olitorius
COL.COLO4_12525 Corchorus olitorius
COL.COLO4_17093 Corchorus olitorius
COL.COLO4_19349 Corchorus olitorius
Cpa.g.sc145.19 Carica papaya
Cpa.g.sc235.1 Carica papaya
Cpa.g.sc235.2 Carica papaya
Cpa.g.sc41.40 Carica papaya
Cpa.g.sc6.421 Carica papaya
CsaV3_1G016940 Cucumis sativus L.
CsaV3_1G042330 Cucumis sativus L.
CsaV3_3G001980 Cucumis sativus L.
CsaV3_3G010210 Cucumis sativus L.
CsaV3_3G049430 Cucumis sativus L.
CsaV3_6G006280 Cucumis sativus L.
CSS0001253 Camellia sinensis var. sinensis
CSS0002467 Camellia sinensis var. sinensis
CSS0004204 Camellia sinensis var. sinensis
CSS0006063 Camellia sinensis var. sinensis
CSS0016218 Camellia sinensis var. sinensis
CSS0024675 Camellia sinensis var. sinensis
DCAR_000436 Daucus carota
DCAR_005607 Daucus carota
DCAR_008291 Daucus carota
DCAR_025017 Daucus carota
Dinv15913 Davidia involucrata
Dinv25195 Davidia involucrata
Dinv28926 Davidia involucrata
Dinv36318 Davidia involucrata
Dinv43566 Davidia involucrata
Dinv44000 Davidia involucrata
Duzib068G1108 Durio zibethinus
Duzib084G0690 Durio zibethinus
Duzib114G0211 Durio zibethinus
Duzib128G0157 Durio zibethinus
Duzib150G0135 Durio zibethinus
Duzib160G0434 Durio zibethinus
Duzib168G1270 Durio zibethinus
Duzib205G0182 Durio zibethinus
ECA233G2640 Erigeron canadensis
ECA234G1091 Erigeron canadensis
ECA246G1186 Erigeron canadensis
ECA248G0060 Erigeron canadensis
EL10Ac1g00693 Beta vulgaris
EL10Ac1g00694 Beta vulgaris
EL10Ac1g00695 Beta vulgaris
EL10Ac1g00869 Beta vulgaris
EL10Ac4g10328 Beta vulgaris
EL10Ac5g12154 Beta vulgaris
Eucgr.B02590 Eucalyptus grandis
Eucgr.B03643 Eucalyptus grandis
Eucgr.D02167 Eucalyptus grandis
Eucgr.E01723 Eucalyptus grandis
FAN01G0991 Fragaria x ananassa
FAN01G1560 Fragaria x ananassa
FAN03G2961 Fragaria x ananassa
FAN03G3259 Fragaria x ananassa
FAN04G0020 Fragaria x ananassa
FAN06G0897 Fragaria x ananassa
FAN06G3171 Fragaria x ananassa
FAN06G4295 Fragaria x ananassa
FAN08G0326 Fragaria x ananassa
FAN10G1820 Fragaria x ananassa
FAN11G3259 Fragaria x ananassa
FAN13G2220 Fragaria x ananassa
FAN16G1699 Fragaria x ananassa
FAN16G1922 Fragaria x ananassa
FAN18G2047 Fragaria x ananassa
FAN21G0646 Fragaria x ananassa
FAN21G3732 Fragaria x ananassa
FAN25G3702 Fragaria x ananassa
FvH4_3g44190 Fragaria vesca
FvH4_3g44201 Fragaria vesca
FvH4_5g21490 Fragaria vesca
FvH4_7g07900 Fragaria vesca
FvH4_7g11480 Fragaria vesca
Glyma.01G200100 Glycine max
Glyma.05G070600 Glycine max
Glyma.08G361300 Glycine max
Glyma.09G237600 Glycine max
Glyma.09G237700 Glycine max
Glyma.10G296600 Glycine max
Glyma.11G042000 Glycine max
Glyma.17G153300 Glycine max
Glyma.18G259900 Glycine max
Glyma.18G260000 Glycine max
Glyma.18G300400 Glycine max
Glyma.20G247400 Glycine max
Gohir.A03G002400 Gossypium hirsutum
Gohir.A06G117900 Gossypium hirsutum
Gohir.A06G157600 Gossypium hirsutum
Gohir.A08G135900 Gossypium hirsutum
Gohir.A08G158800 Gossypium hirsutum
Gohir.A13G011900 Gossypium hirsutum
Gohir.A13G214500 Gossypium hirsutum
Gohir.D03G169900 Gossypium hirsutum
Gohir.D06G112050 Gossypium hirsutum
Gohir.D06G163900 Gossypium hirsutum
Gohir.D08G156650 Gossypium hirsutum
Gohir.D08G179200 Gossypium hirsutum
Gohir.D13G012900 Gossypium hirsutum
Gohir.D13G218200 Gossypium hirsutum
Gorai.003G180200 Gossypium raimondii
Gorai.004G163000 Gossypium raimondii
Gorai.004G187700 Gossypium raimondii
Gorai.010G127800 Gossypium raimondii
Gorai.010G191000 Gossypium raimondii
Gorai.013G013900 Gossypium raimondii
Gorai.013G249000 Gossypium raimondii
GSVIVG01013171001 Vitis vinifera
GSVIVG01018395001 Vitis vinifera
GSVIVG01025359001 Vitis vinifera
GSVIVG01027663001 Vitis vinifera
HanXRQChr01g0015641 Helianthus annuus
HanXRQChr06g0167261 Helianthus annuus
HanXRQChr12g0366091 Helianthus annuus
HanXRQChr13g0404221 Helianthus annuus
HanXRQChr16g0519971 Helianthus annuus
HanXRQChr17g0535791 Helianthus annuus
Haze_02933 Corylus avellana
Haze_08278 Corylus avellana
Haze_08283 Corylus avellana
Haze_23018 Corylus avellana
Hma1.2p1_1806F.1_g303260 Hydrangea macrophylla
HPP92_002737 Vanilla planifolia
HPP92_017810 Vanilla planifolia
HPP92_027999 Vanilla planifolia
Hund11259 Selenicereus undatus
Hund14411 Selenicereus undatus
Hund17033 Selenicereus undatus
Hund17146 Selenicereus undatus
Lalb_Chr02g0144441 Lupinus albus
Lalb_Chr09g0323891 Lupinus albus
Lalb_Chr10g0091001 Lupinus albus
Lalb_Chr16g0386101 Lupinus albus
Lj1g0002614 Lotus japonicus
Lj1g0009509 Lotus japonicus
Lj2A244T64 Lonicera japonica
Lj2A672T47 Lonicera japonica
Lj2g0000164 Lotus japonicus
Lj3g0007243 Lotus japonicus
Lj4g0022429 Lotus japonicus
Lj5g0006894 Lotus japonicus
Lj7C556G9 Lonicera japonica
Lj8C290T13 Lonicera japonica
Lj9A547T71 Lonicera japonica
Lsat_1_v5_gn_1_83321 Lactuca sativa
Lsat_1_v5_gn_3_16160 Lactuca sativa
Lsat_1_v5_gn_4_43101 Lactuca sativa
Lsat_1_v5_gn_6_49900 Lactuca sativa
Manes.03G090380 Manihot esculenta
Manes.05G061100 Manihot esculenta
Manes.15G102900 Manihot esculenta
Manes.15G170000 Manihot esculenta
Manes.17G018600 Manihot esculenta
MBI01_g01351_MAGBIO Magnolia biondii
MBI04_g22961_MAGBIO Magnolia biondii
MBI04_g36291_MAGBIO Magnolia biondii
MBI04_g36292_MAGBIO Magnolia biondii
MBI04_g38559_MAGBIO Magnolia biondii
MD02G1228800 Malus domestica
MD03G1016400 Malus domestica
MD03G1016700 Malus domestica
MD06G1029400 Malus domestica
MD07G1082700 Malus domestica
MD11G1017300 Malus domestica
MD16G1277800 Malus domestica
Medtr1g116930 Medicago truncatula
Medtr4g024930 Medicago truncatula
Medtr4g098800 Medicago truncatula
Medtr5g014150 Medicago truncatula
Medtr7g005930 Medicago truncatula
Medtr7g010820 Medicago truncatula
Medtr7g013270 Medicago truncatula
MELO3C003382.2 Cucumis melo
MELO3C006241.2 Cucumis melo
MELO3C013869.2 Cucumis melo
MELO3C015666.2 Cucumis melo
MELO3C022493.2 Cucumis melo
Migut.B01465 Erythranthe guttata
Migut.B01617 Erythranthe guttata
Migut.D00545 Erythranthe guttata
Migut.E00916 Erythranthe guttata
Migut.N02283 Erythranthe guttata
MSTRG.17562 Avicennia marina
MSTRG.1972 Avicennia marina
MSTRG.20647 Avicennia marina
MSTRG.20737 Avicennia marina
Nitab4.5_0000018g0210 Nicotiana tabacum
Nitab4.5_0000166g0100 Nicotiana tabacum
Nitab4.5_0000764g0060 Nicotiana tabacum
Nitab4.5_0001146g0140 Nicotiana tabacum
Nitab4.5_0004264g0030 Nicotiana tabacum
Nitab4.5_0006398g0030 Nicotiana tabacum
Nitab4.5_0007026g0010 Nicotiana tabacum
Nitab4.5_0007026g0020 Nicotiana tabacum
Nitab4.5_0007607g0020 Nicotiana tabacum
Nitab4.5_0007712g0010 Nicotiana tabacum
Nitab4.5_0010616g0030 Nicotiana tabacum
Nn1g00588 Nelumbo nucifera
Nn2g15660 Nelumbo nucifera
Nn6g33641 Nelumbo nucifera
Nn7g36018 Nelumbo nucifera
Oeu002883.1 Olea europaea
Oeu037393.1 Olea europaea
Oeu037928.1 Olea europaea
Oeu038835.2 Olea europaea
Os02g0689900 Oryza sativa ssp. japonica
Os02g0716800 Oryza sativa ssp. japonica
Os06g0324150 Oryza sativa ssp. japonica
Os06g0324300 Oryza sativa ssp. japonica
Peaxi162Scf00013g00036 Petunia axillaris
Peaxi162Scf00013g03020 Petunia axillaris
Peaxi162Scf00102g00628 Petunia axillaris
Peaxi162Scf00312g00053 Petunia axillaris
Peaxi162Scf00403g00007 Petunia axillaris
Peaxi162Scf00901g00317 Petunia axillaris
Peaxi162Scf01144g00012 Petunia axillaris
PGR031G3994 Punica granatum
PGR042G0473 Punica granatum
PGR042G1860 Punica granatum
PGR119G0972 Punica granatum
PGSC0003DMG400001671 Solanum tuberosum
PGSC0003DMG400020514 Solanum tuberosum
PGSC0003DMG400024120 Solanum tuberosum
PGSC0003DMG400025961 Solanum tuberosum
Phvul.002G005700 Phaseolus vulgaris
Phvul.003G229000 Phaseolus vulgaris
Phvul.007G002800 Phaseolus vulgaris
Phvul.008G002100 Phaseolus vulgaris
Phvul.008G020800 Phaseolus vulgaris
Phvul.008G040500 Phaseolus vulgaris
Phvul.008G040600 Phaseolus vulgaris
Potri.001G013400 Populus trichocarpa
Potri.001G145200 Populus trichocarpa
Potri.003G088800 Populus trichocarpa
Potri.003G212900 Populus trichocarpa
Potri.014G179400 Populus trichocarpa
Prupe.2G110400 Prunus persica
Prupe.2G143200 Prunus persica
Prupe.5G042300 Prunus persica
Prupe.6G014900 Prunus persica
Prupe.6G015100 Prunus persica
Psat0s3070g0120 Pisum sativum
Psat2g173680 Pisum sativum
Psat4g078440 Pisum sativum
Psat6g101280 Pisum sativum
Psat6g142760 Pisum sativum
Psat6g242600 Pisum sativum
Psat7g232000 Pisum sativum
PSO063G3133 Papaver somniferum
PSO210G2100 Papaver somniferum
PSO210G5929 Papaver somniferum
PSO339G5143 Papaver somniferum
PSO339G6329 Papaver somniferum
PSO384G3789 Papaver somniferum
PSO782G3093 Papaver somniferum
QL01p009683 Quercus lobata
QL04p024981 Quercus lobata
QL04p024995 Quercus lobata
QL12p006702 Quercus lobata
QL12p006707 Quercus lobata
RcHm_v2.0_Chr1g0341461 Rosa chinensis
RcHm_v2.0_Chr1g0341491 Rosa chinensis
RcHm_v2.0_Chr1g0341501 Rosa chinensis
RcHm_v2.0_Chr5g0080531 Rosa chinensis
RcHm_v2.0_Chr5g0080551 Rosa chinensis
RcHm_v2.0_Chr7g0208891 Rosa chinensis
Rhsim01G0186800 Rhododendron simsii
Rhsim07G0041800 Rhododendron simsii
Rhsim07G0042200 Rhododendron simsii
Rhsim07G0123900 Rhododendron simsii
Rhsim07G0124100 Rhododendron simsii
Rhsim13G0226600 Rhododendron simsii
Sabra01G0009800 Salix brachista
Sabra01G0113400 Salix brachista
Sabra03G0058800 Salix brachista
Sabra03G0155800 Salix brachista
Sabra03G0159000 Salix brachista
Sabra14G0139600 Salix brachista
SalBow5G2277 Salvia bowleyana
SalBow5G3590 Salvia bowleyana
Sc02g0002660 Simmondsia chinensis
Sc07g0008880 Simmondsia chinensis
Sc16g0011950 Simmondsia chinensis
Sc16g0011960 Simmondsia chinensis
Sed0000086 Sechium edule
Sed0001797 Sechium edule
Sed0002334 Sechium edule
Sed0004246 Sechium edule
Sed0008384 Sechium edule
Sed0010279 Sechium edule
Sed0015903 Sechium edule
Sed0023669 Sechium edule
SEGI_08415 Sequoiadendron giganteum
SEGI_20101 Sequoiadendron giganteum
SEGI_21959 Sequoiadendron giganteum
SEGI_22379 Sequoiadendron giganteum
SEGI_28097 Sequoiadendron giganteum
SEGI_40681 Sequoiadendron giganteum
SGA_v2.0_scaffold153G36992 Striga asiatica
SGA_v2.0_scaffold1G00767 Striga asiatica
SGA_v2.0_scaffold3G01556 Striga asiatica
SGA_v2.0_scaffold52G19275 Striga asiatica
SGA_v2.0_scaffold6G03189 Striga asiatica
SGA_v2.0_scaffold77G25231 Striga asiatica
SHI07468 Sapria himalayana
SHI30536 Sapria himalayana
Solyc01g006440.2 Solanum lycopersicum
Solyc01g080870.3 Solanum lycopersicum
Solyc01g091180.4 Solanum lycopersicum
Solyc08g007060.4 Solanum lycopersicum
Solyc08g077170.3 Solanum lycopersicum
Solyc10g024490.2 Solanum lycopersicum
Sopen01g002430 Solanum pennellii
Sopen01g032460 Solanum pennellii
Sopen01g036930 Solanum pennellii
Sopen08g003010 Solanum pennellii
Sopen08g025720 Solanum pennellii
Sopen10g025770 Solanum pennellii
Sp1g28450 Schrenkiella parvula
Sp6g24750 Schrenkiella parvula
Sp7g19790 Schrenkiella parvula
Sp7g19800 Schrenkiella parvula
Sp7g19810 Schrenkiella parvula
TAR375G0247 Trochodendron aralioides
TAR375G0913 Trochodendron aralioides
TAR629G3086 Trochodendron aralioides
TAR633G0156 Trochodendron aralioides
TAR633G1960 Trochodendron aralioides
TAR636G1393 Trochodendron aralioides
THA.LOC104798472 Tarenaya hassleriana
THA.LOC104799084 Tarenaya hassleriana
THA.LOC104812832 Tarenaya hassleriana
THA.LOC104814427 Tarenaya hassleriana
Thecc.01G379000 Theobroma cacao
Thecc.03G232300 Theobroma cacao
Thecc.09G218500 Theobroma cacao
Thecc.10G000500 Theobroma cacao
Thhalv10007088m.g Eutrema salsugineum
Thhalv10015614m.g Eutrema salsugineum
Thhalv10024762m.g Eutrema salsugineum
TPR.G15612 Trifolium pratense
TPR.G19201 Trifolium pratense
TPR.G27536 Trifolium pratense
TPR.G7579 Trifolium pratense
TPR.G8896 Trifolium pratense
TPR.G911 Trifolium pratense
TPR.G9843 Trifolium pratense
TPR.G9849 Trifolium pratense
TWI14G0526 Tripterygium wilfordii
TWI14G0992 Tripterygium wilfordii
TWI15G0271 Tripterygium wilfordii
TWI23G1295 Tripterygium wilfordii
TWI34G0409 Tripterygium wilfordii
TWI60G0514 Tripterygium wilfordii
TWI60G1614 Tripterygium wilfordii
TWI81G0054 Tripterygium wilfordii
unitig_749.g13728 Utricularia gibba
unitig_8.g3916 Utricularia gibba
vmacro04159 Vaccinium macrocarpon
vmacro13555 Vaccinium macrocarpon
vmacro14157 Vaccinium macrocarpon
vmacro22158 Vaccinium macrocarpon
VMungo0251G2359 Vigna mungo
VMungo0720G0857 Vigna mungo
VMungo1215G2884 Vigna mungo
VMungo1383G1071 Vigna mungo
VMungo1383G3339 Vigna mungo
Zm00001eb189000 Zea mays
Zm00001eb251130 Zea mays
Zm00001eb304390 Zea mays

User provided reference genes

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