Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02270 Brassica napus
A03p28230 Brassica napus
A03p64380 Brassica napus
A07p14710 Brassica napus
A07p40760 Brassica napus
A08p22300 Brassica napus
A09p42590 Brassica napus
Aa31LG4G5370 Aethionema arabicum
Aa31LG6G13440 Aethionema arabicum
Aa31LG9G14550 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2222 Anthoceros agrestis
Actinidia15326 Actinidia chinensis
Actinidia22549 Actinidia chinensis
Actinidia29582 Actinidia chinensis
Actinidia33150 Actinidia chinensis
Actinidia36559 Actinidia chinensis
Ah.03g140840 Amaranthus hybridus
Ah.05g170290 Amaranthus hybridus
AL1G35630 Arabidopsis lyrata
AL2G35080 Arabidopsis lyrata
AL6G42470 Arabidopsis lyrata
AL7G14400 Arabidopsis lyrata
Aqoxy5G01644 Aquilegia oxysepala
Aqoxy6G00579 Aquilegia oxysepala
Aqoxy6G01103 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4S1Z6L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.68QIGD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A25KZS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DYU645 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FTVA6C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J2GFEF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0LQZB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P0KEMF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJQ42N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U4QIQ0 Arachis hypogaea
AT1G22180 Arabidopsis thaliana
AT1G75170 Arabidopsis thaliana
AT4G08690 Arabidopsis thaliana
AT4G36640 Arabidopsis thaliana
ATR0564G313 Amborella trichopoda
ATR0733G237 Amborella trichopoda
Atru.chr13.1257 Acer truncatum
Atru.chr13.485 Acer truncatum
Atru.chr13.486 Acer truncatum
Atru.chr2.1603 Acer truncatum
Atru.chr3.569 Acer truncatum
AUR62004048 Chenopodium quinoa
AUR62007563 Chenopodium quinoa
AUR62027723 Chenopodium quinoa
BcaB01g02849 Brassica carinata
BcaB01g03099 Brassica carinata
BcaB03g12381 Brassica carinata
BcaB03g14229 Brassica carinata
BcaB07g32236 Brassica carinata
BcaC01g00455 Brassica carinata
BcaC01g04756 Brassica carinata
BcaC05g26143 Brassica carinata
BcaC06g34936 Brassica carinata
BcaC08g46943 Brassica carinata
BcaC08g46981 Brassica carinata
BcaNung00715 Brassica carinata
BcaNung04426 Brassica carinata
BolC1t00235H Brassica oleracea
BolC3t15722H Brassica oleracea
BolC3t20254H Brassica oleracea
BolC5t30827H Brassica oleracea
BolC6t39948H Brassica oleracea
BolC7t42695H Brassica oleracea
BolC7t46603H Brassica oleracea
BraA01t00213Z Brassica rapa
BraA03t12031Z Brassica rapa
BraA03t15503Z Brassica rapa
BraA07t29215Z Brassica rapa
BraA07t31618Z Brassica rapa
BraA08t34188Z Brassica rapa
BraA09t39734Z Brassica rapa
C01p02470 Brassica napus
C03p34130 Brassica napus
C03p80020 Brassica napus
C05p21280 Brassica napus
C06p49150 Brassica napus
C07p21630 Brassica napus
C07p61820 Brassica napus
CAN.G1139.13 Capsicum annuum
CAN.G1226.8 Capsicum annuum
CAN.G358.96 Capsicum annuum
CAN.G517.10 Capsicum annuum
CAN.G959.42 Capsicum annuum
CANSAT01G0938 Cannabis sativa
CANSAT25G2269 Cannabis sativa
CANSAT25G2725 Cannabis sativa
CANSAT78G1700 Cannabis sativa
CARHR022530 Cardamine hirsuta
CARHR068500 Cardamine hirsuta
CARHR244980 Cardamine hirsuta
CARHR259660 Cardamine hirsuta
Carub.0001s2173 Capsella rubella
Carub.0002s2198 Capsella rubella
Carub.0006s2720 Capsella rubella
Carub.0007s0369 Capsella rubella
Ca_03429_v3 Cicer arietinum L.
Ca_13376_v3 Cicer arietinum L.
Ca_15233_v3 Cicer arietinum L.
Ca_22264_v3 Cicer arietinum L.
Ca_22278_v3 Cicer arietinum L.
Ca_26521_v3 Cicer arietinum L.
CBR_g31494 Chara braunii
Cc07_g09500 Coffea canephora
Cc10_g02920 Coffea canephora
Cc10_g07510 Coffea canephora
CDE02G3218 Ceratophyllum demersum
CDE04G0291 Ceratophyllum demersum
CDE04G1705 Ceratophyllum demersum
CDE06G0496 Ceratophyllum demersum
CDE10G1126 Ceratophyllum demersum
Cfa015918 Carpinus fangiana
Cfa018148 Carpinus fangiana
Ciclev10001758m.g Citrus clementina
Ciclev10002080m.g Citrus clementina
Ciclev10026226m.g Citrus clementina
Ciclev10032042m.g Citrus clementina
CiPaw.01G037700 Carya illinoinensis
CiPaw.02G017400 Carya illinoinensis
CiPaw.05G235600 Carya illinoinensis
CiPaw.06G021200 Carya illinoinensis
CiPaw.09G052900 Carya illinoinensis
CiPaw.15G077800 Carya illinoinensis
ClCG01G019530 Citrullus lanatus
ClCG04G004840 Citrullus lanatus
ClCG05G019010 Citrullus lanatus
ClCG07G009200 Citrullus lanatus
ClCG11G015390 Citrullus lanatus
COL.COLO4_16447 Corchorus olitorius
COL.COLO4_22084 Corchorus olitorius
COL.COLO4_26324 Corchorus olitorius
COL.COLO4_33473 Corchorus olitorius
Cpa.g.c29302.2 Carica papaya
Cpa.g.sc36.72 Carica papaya
Cpa.g.sc6.111 Carica papaya
Cpa.g.sc66.84 Carica papaya
Cpa.g.sc73.38 Carica papaya
Cre03.g210961 Chlamydomonas reinhardtii
Cre07.g352976 Chlamydomonas reinhardtii
Cre12.g503950 Chlamydomonas reinhardtii
CsaV3_3G045080 Cucumis sativus L.
CsaV3_4G005040 Cucumis sativus L.
CsaV3_4G028710 Cucumis sativus L.
CsaV3_4G031670 Cucumis sativus L.
CsaV3_6G046220 Cucumis sativus L.
CSS0006658 Camellia sinensis var. sinensis
CSS0014225 Camellia sinensis var. sinensis
CSS0014878 Camellia sinensis var. sinensis
CSS0015771 Camellia sinensis var. sinensis
CSS0020070 Camellia sinensis var. sinensis
CSS0043869 Camellia sinensis var. sinensis
CSS0044642 Camellia sinensis var. sinensis
DCAR_008713 Daucus carota
DCAR_008757 Daucus carota
DCAR_009090 Daucus carota
DCAR_017281 Daucus carota
DCAR_020634 Daucus carota
Dinv09878 Davidia involucrata
Dinv13535 Davidia involucrata
Dinv14552 Davidia involucrata
Dinv36077 Davidia involucrata
Dinv37046 Davidia involucrata
Dinv39418 Davidia involucrata
Dinv39984 Davidia involucrata
Dinv44751 Davidia involucrata
Duzib093G0156 Durio zibethinus
Duzib093G1592 Durio zibethinus
Duzib106G1904 Durio zibethinus
Duzib116G0088 Durio zibethinus
Duzib116G0528 Durio zibethinus
Duzib177G0539 Durio zibethinus
Duzib187G1864 Durio zibethinus
Duzib264G0648 Durio zibethinus
ECA232G0748 Erigeron canadensis
ECA246G3645 Erigeron canadensis
ECA246G4658 Erigeron canadensis
ECA246G5304 Erigeron canadensis
ECA247G0931 Erigeron canadensis
ECA247G2289 Erigeron canadensis
EL10Ac1g01259 Beta vulgaris
EL10Ac6g15565 Beta vulgaris
Eucgr.B00452 Eucalyptus grandis
Eucgr.F01566 Eucalyptus grandis
Eucgr.F02445 Eucalyptus grandis
Eucgr.I02445 Eucalyptus grandis
Eucgr.K01552 Eucalyptus grandis
FAN04G0232 Fragaria x ananassa
FAN08G3067 Fragaria x ananassa
FAN13G2392 Fragaria x ananassa
FAN15G1187 Fragaria x ananassa
FAN18G4481 Fragaria x ananassa
FAN19G0824 Fragaria x ananassa
FAN19G0850 Fragaria x ananassa
FAN20G0692 Fragaria x ananassa
FAN23G1869 Fragaria x ananassa
FAN26G0351 Fragaria x ananassa
FAN28G0629 Fragaria x ananassa
FAN28G1158 Fragaria x ananassa
FvH4_1g13330 Fragaria vesca
FvH4_2g39850 Fragaria vesca
FvH4_5g37870 Fragaria vesca
Glyma.02G057200 Glycine max
Glyma.03G004600 Glycine max
Glyma.04G032500 Glycine max
Glyma.04G104300 Glycine max
Glyma.04G104400 Glycine max
Glyma.06G032400 Glycine max
Glyma.06G105500 Glycine max
Glyma.13G087900 Glycine max
Glyma.14G075300 Glycine max
Glyma.14G170800 Glycine max
Glyma.16G140300 Glycine max
Glyma.17G250100 Glycine max
Gohir.A02G165000 Gossypium hirsutum
Gohir.A05G194500 Gossypium hirsutum
Gohir.A05G228700 Gossypium hirsutum
Gohir.A06G010400 Gossypium hirsutum
Gohir.A06G037700 Gossypium hirsutum
Gohir.A11G043700 Gossypium hirsutum
Gohir.A13G159900 Gossypium hirsutum
Gohir.D03G015000 Gossypium hirsutum
Gohir.D05G197700 Gossypium hirsutum
Gohir.D05G231100 Gossypium hirsutum
Gohir.D06G007800 Gossypium hirsutum
Gohir.D06G039200 Gossypium hirsutum
Gohir.D11G047200 Gossypium hirsutum
Gohir.D13G165100 Gossypium hirsutum
Gorai.003G015300 Gossypium raimondii
Gorai.007G050700 Gossypium raimondii
Gorai.009G202600 Gossypium raimondii
Gorai.009G239300 Gossypium raimondii
Gorai.010G010500 Gossypium raimondii
Gorai.010G043500 Gossypium raimondii
Gorai.013G197600 Gossypium raimondii
GSVIVG01008998001 Vitis vinifera
GSVIVG01009704001 Vitis vinifera
GSVIVG01018963001 Vitis vinifera
GSVIVG01029895001 Vitis vinifera
HanXRQChr02g0042091 Helianthus annuus
HanXRQChr02g0044701 Helianthus annuus
HanXRQChr04g0105571 Helianthus annuus
HanXRQChr05g0151941 Helianthus annuus
HanXRQChr05g0162201 Helianthus annuus
HanXRQChr09g0268881 Helianthus annuus
HanXRQChr16g0510661 Helianthus annuus
HanXRQChr16g0530361 Helianthus annuus
Haze_00577 Corylus avellana
Haze_15092 Corylus avellana
Haze_17972 Corylus avellana
Hma1.2p1_0120F.1_g057160 Hydrangea macrophylla
Hma1.2p1_0203F.1_g086390 Hydrangea macrophylla
Hma1.2p1_0224F.1_g094680 Hydrangea macrophylla
Hma1.2p1_1316F.1_g275180 Hydrangea macrophylla
Hma1.2p1_3272F.1_g334800 Hydrangea macrophylla
HPP92_001707 Vanilla planifolia
HPP92_016438 Vanilla planifolia
HPP92_026668 Vanilla planifolia
Hund13973 Selenicereus undatus
Hund16429 Selenicereus undatus
Hund26949 Selenicereus undatus
Lalb_Chr09g0333551 Lupinus albus
Lalb_Chr10g0102221 Lupinus albus
Lalb_Chr11g0062351 Lupinus albus
Lalb_Chr11g0065521 Lupinus albus
Lalb_Chr14g0365091 Lupinus albus
Lalb_Chr14g0369251 Lupinus albus
Lalb_Chr16g0377851 Lupinus albus
Lalb_Chr22g0358321 Lupinus albus
Lalb_Chr23g0270651 Lupinus albus
Lalb_Chr24g0398981 Lupinus albus
Lj1A1075T75 Lonicera japonica
Lj1g0008087 Lotus japonicus
Lj1g0010924 Lotus japonicus
Lj1g0012732 Lotus japonicus
Lj1g0026505 Lotus japonicus
Lj1g0027366 Lotus japonicus
Lj2A905T22 Lonicera japonica
Lj4A40T48 Lonicera japonica
Lj4A715T33 Lonicera japonica
Lj4A786T46 Lonicera japonica
Lj4C201G9 Lonicera japonica
Lj5g0023691 Lotus japonicus
LjContig00448g0019580 Lotus japonicus
Lsat_1_v5_gn_1_17680 Lactuca sativa
Lsat_1_v5_gn_1_4221 Lactuca sativa
Lsat_1_v5_gn_3_76320 Lactuca sativa
Lsat_1_v5_gn_4_119521 Lactuca sativa
Lsat_1_v5_gn_5_28901 Lactuca sativa
Lsat_1_v5_gn_6_102241 Lactuca sativa
Manes.01G135200 Manihot esculenta
Manes.05G159900 Manihot esculenta
Manes.09G134200 Manihot esculenta
Manes.18G069500 Manihot esculenta
Mapoly0033s0132 Marchantia polymorpha
MBI02_g30894_MAGBIO Magnolia biondii
MBI05_g34464_MAGBIO Magnolia biondii
MBI16_g31219_MAGBIO Magnolia biondii
MBI16_g38032_MAGBIO Magnolia biondii
MBI16_g41747_MAGBIO Magnolia biondii
MCO03G117 Micromonas commoda
MD02G1148100 Malus domestica
MD08G1032100 Malus domestica
MD08G1179500 Malus domestica
MD12G1015100 Malus domestica
MD14G1013100 Malus domestica
MD15G1028100 Malus domestica
MD15G1262300 Malus domestica
MD15G1364800 Malus domestica
Medtr1g022185 Medicago truncatula
Medtr3g074050 Medicago truncatula
Medtr5g062310 Medicago truncatula
Medtr7g087500 Medicago truncatula
Medtr8g077700 Medicago truncatula
MELO3C003839.2 Cucumis melo
MELO3C007825.2 Cucumis melo
MELO3C008874.2 Cucumis melo
MELO3C010421.2 Cucumis melo
MELO3C017562.2 Cucumis melo
Migut.H00994 Erythranthe guttata
Migut.J01578 Erythranthe guttata
Migut.N00492 Erythranthe guttata
Migut.O00461 Erythranthe guttata
MSTRG.22138 Avicennia marina
MSTRG.23527 Avicennia marina
MSTRG.24290 Avicennia marina
MSTRG.24472 Avicennia marina
MSTRG.25168 Avicennia marina
MSTRG.2760 Avicennia marina
MSTRG.6274 Avicennia marina
Nitab4.5_0000123g0080 Nicotiana tabacum
Nitab4.5_0000434g0180 Nicotiana tabacum
Nitab4.5_0000469g0130 Nicotiana tabacum
Nitab4.5_0001385g0120 Nicotiana tabacum
Nitab4.5_0003496g0060 Nicotiana tabacum
Nitab4.5_0005373g0020 Nicotiana tabacum
Nitab4.5_0006280g0080 Nicotiana tabacum
Nitab4.5_0007999g0040 Nicotiana tabacum
Nitab4.5_0016172g0010 Nicotiana tabacum
Nitab4.5_0023530g0010 Nicotiana tabacum
Nn1g04996 Nelumbo nucifera
Nn1g05296 Nelumbo nucifera
Nn5g29051 Nelumbo nucifera
Nn5g29601 Nelumbo nucifera
Oeu029856.1 Olea europaea
Oeu049957.2 Olea europaea
Oeu060742.1 Olea europaea
Os01g0264700 Oryza sativa ssp. japonica
Os02g0752000 Oryza sativa ssp. japonica
Os03g0724100 Oryza sativa ssp. japonica
Os05g0267100 Oryza sativa ssp. japonica
Os05g0267800 Oryza sativa ssp. japonica
Peaxi162Scf00003g05365 Petunia axillaris
Peaxi162Scf00041g00217 Petunia axillaris
Peaxi162Scf00064g00422 Petunia axillaris
Peaxi162Scf00366g00001 Petunia axillaris
Peaxi162Scf00417g01210 Petunia axillaris
Peaxi162Scf00996g00027 Petunia axillaris
Peaxi162Scf00996g00036 Petunia axillaris
PGR042G0420 Punica granatum
PGR044G1231 Punica granatum
PGR083G2441 Punica granatum
PGR119G0788 Punica granatum
PGSC0003DMG400005155 Solanum tuberosum
PGSC0003DMG400007206 Solanum tuberosum
PGSC0003DMG400009482 Solanum tuberosum
PGSC0003DMG400014899 Solanum tuberosum
PGSC0003DMG400015426 Solanum tuberosum
Phvul.001G014800 Phaseolus vulgaris
Phvul.001G101900 Phaseolus vulgaris
Phvul.003G253300 Phaseolus vulgaris
Phvul.008G171700 Phaseolus vulgaris
Phvul.009G029100 Phaseolus vulgaris
Phvul.009G029200 Phaseolus vulgaris
Potri.002G093400 Populus trichocarpa
Potri.002G261000 Populus trichocarpa
Potri.005G123200 Populus trichocarpa
Potri.005G168100 Populus trichocarpa
Potri.007G025800 Populus trichocarpa
Potri.007G025900 Populus trichocarpa
Potri.013G068700 Populus trichocarpa
Pp3c13_20180 Physcomitrium patens
Pp3c27_4100 Physcomitrium patens
Pp3c3_26700 Physcomitrium patens
Pp3c6_12580 Physcomitrium patens
PRCOL_00002659 Prasinoderma coloniale
Prupe.1G379800 Prunus persica
Prupe.1G512800 Prunus persica
Prupe.7G025600 Prunus persica
Prupe.7G154300 Prunus persica
Psat2g074240 Pisum sativum
Psat3g084200 Pisum sativum
Psat4g092520 Pisum sativum
Psat5g136800 Pisum sativum
Psat6g006800 Pisum sativum
PSO133G0083 Papaver somniferum
PSO210G6855 Papaver somniferum
PSO339G5783 Papaver somniferum
PSO384G1116 Papaver somniferum
PSO541G4625 Papaver somniferum
PSO541G5585 Papaver somniferum
PSO675G5923 Papaver somniferum
PSO731G0066 Papaver somniferum
QL02p008526 Quercus lobata
QL06p046036 Quercus lobata
QL07p015915 Quercus lobata
QL12p036101 Quercus lobata
RcHm_v2.0_Chr2g0101611 Rosa chinensis
RcHm_v2.0_Chr3g0495481 Rosa chinensis
RcHm_v2.0_Chr6g0300991 Rosa chinensis
RcHm_v2.0_Chr7g0239851 Rosa chinensis
Rhsim06G0034000 Rhododendron simsii
Rhsim06G0084800 Rhododendron simsii
Rhsim06G0087800 Rhododendron simsii
RhsimUnG0022800 Rhododendron simsii
Sabra02G0073700 Salix brachista
Sabra02G0198700 Salix brachista
Sabra05G0101300 Salix brachista
Sabra07G0022800 Salix brachista
Sabra07G0022900 Salix brachista
SalBow1G2997 Salvia bowleyana
SalBow3G1272 Salvia bowleyana
SalBow8G1398 Salvia bowleyana
SalBow8G2747 Salvia bowleyana
Sc01g0000120 Simmondsia chinensis
Sc01g0000240 Simmondsia chinensis
Sc07g0000410 Simmondsia chinensis
Sc26g0003600 Simmondsia chinensis
Sed0004839 Sechium edule
Sed0005761 Sechium edule
Sed0009390 Sechium edule
Sed0009780 Sechium edule
SEGI_09539 Sequoiadendron giganteum
SEGI_23893 Sequoiadendron giganteum
SEGI_37283 Sequoiadendron giganteum
SGA_v2.0_scaffold315G48375 Striga asiatica
SGA_v2.0_scaffold326G48725 Striga asiatica
SGA_v2.0_scaffold489G52414 Striga asiatica
SGA_v2.0_scaffold66G22333 Striga asiatica
SHI08158 Sapria himalayana
SMO134G0189 Selaginella moellendorffii
SMO200G0266 Selaginella moellendorffii
Solyc04g072810.4 Solanum lycopersicum
Solyc04g080290.3 Solanum lycopersicum
Solyc09g098600.2 Solanum lycopersicum
Solyc12g089130.2 Solanum lycopersicum
Sopen02g029990 Solanum pennellii
Sopen04g028980 Solanum pennellii
Sopen04g033890 Solanum pennellii
Sopen09g036510 Solanum pennellii
Sopen12g031000 Solanum pennellii
Sp1g19680 Schrenkiella parvula
Sp5g30320 Schrenkiella parvula
Sp6g09090 Schrenkiella parvula
Sp7g34300 Schrenkiella parvula
TAR376G1211 Trochodendron aralioides
TAR381G1001 Trochodendron aralioides
TAR625G1445 Trochodendron aralioides
TAR628G1045 Trochodendron aralioides
TAR628G1052 Trochodendron aralioides
THA.LOC104804733 Tarenaya hassleriana
THA.LOC104813124 Tarenaya hassleriana
THA.LOC104813838 Tarenaya hassleriana
THA.LOC104819788 Tarenaya hassleriana
Thecc.01G036200 Theobroma cacao
Thecc.05G236500 Theobroma cacao
Thecc.08G026100 Theobroma cacao
Thecc.08G110800 Theobroma cacao
Thhalv10008258m.g Eutrema salsugineum
Thhalv10018941m.g Eutrema salsugineum
Thhalv10025882m.g Eutrema salsugineum
Thhalv10028819m.g Eutrema salsugineum
TPR.G20145 Trifolium pratense
TPR.G23668 Trifolium pratense
TPR.G31687 Trifolium pratense
TPR.G34984 Trifolium pratense
TPR.G35203 Trifolium pratense
TWI09G0676 Tripterygium wilfordii
TWI36G1754 Tripterygium wilfordii
TWI56G0565 Tripterygium wilfordii
TWI56G0805 Tripterygium wilfordii
TWI60G0153 Tripterygium wilfordii
TWI73G0253 Tripterygium wilfordii
unitig_26.g9265 Utricularia gibba
unitig_749.g13412 Utricularia gibba
unitig_8.g3373 Utricularia gibba
vmacro04759 Vaccinium macrocarpon
vmacro21206 Vaccinium macrocarpon
vmacro21233 Vaccinium macrocarpon
vmacro21638 Vaccinium macrocarpon
VMungo0251G1034 Vigna mungo
VMungo0647G2260 Vigna mungo
VMungo0647G2367 Vigna mungo
VMungo1309G1086 Vigna mungo
VMungo1309G1238 Vigna mungo
VMungo1309G2975 Vigna mungo
VMungo1383G0794 Vigna mungo
Zm00001eb055720 Zea mays
Zm00001eb055730 Zea mays
Zm00001eb128290 Zea mays
Zm00001eb194240 Zea mays
Zm00001eb284490 Zea mays
Zm00001eb351090 Zea mays

User provided reference genes

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