If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 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'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ), 'gf_id' => 'ORTHO05D000676', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ), 'data_identifier' => 'ORTHO05D000676', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000676', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '687', 'num_species' => '24' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'Actinidia35052' => 'ach', 'Ah.07g205810' => 'amhyb', 'Ah.13g072850' => 'amhyb', 'Aqoxy2G00817' => 'aox', 'Aqoxy2G03771' => 'aox', 'Aqoxy369s003' => 'aox', 'Aqoxy3G00723' => 'aox', 'Aqoxy3G01080' => 'aox', 'Aqoxy3G01327' => 'aox', 'Aqoxy3G02528' => 'aox', 'Aqoxy3G03525' => 'aox', 'Aqoxy3G03531' => 'aox', 'Aqoxy3G03533' => 'aox', 'Aqoxy3G03704' => 'aox', 'Aqoxy3G04097' => 'aox', 'Aqoxy4G00673' => 'aox', 'Aqoxy4G00884' => 'aox', 'Aqoxy4G01787' => 'aox', 'Aqoxy5G03339' => 'aox', 'Aqoxy5G03340' => 'aox', 'Aqoxy5G03361' => 'aox', 'Aqoxy6G00787' => 'aox', 'Aqoxy6G02376' => 'aox', 'Aqoxy6G02643' => 'aox', 'CANSAT11G1035' => 'cansat', 'CANSAT64G2796' => 'cansat', 'COL.COLO4_09905' => 'col', 'COL.COLO4_09906' => 'col', 'COL.COLO4_09907' => 'col', 'COL.COLO4_09908' => 'col', 'COL.COLO4_09937' => 'col', 'COL.COLO4_28000' => 'col', 'CSS0016805' => 'camsi', 'CSS0020981' => 'camsi', 'CSS0030420' => 'camsi', 'Dinv17447' => 'din', 'Dinv31069' => 'din', 'ECA240G1786' => 'eca', 'ECA240G3692' => 'eca', 'FAN17G1591' => 'fan', 'FvH4_6g28330' => 'fve', 'FvH4_6g39874' => 'fve', 'HanXRQChr03g0074891' => 'han', 'HanXRQChr03g0076041' => 'han', 'HanXRQChr03g0076061' => 'han', 'HanXRQChr11g0327481' => 'han', 'Hma1.2p1_1603F.1_g293210' => 'hma', 'MBI05_g07862_MAGBIO' => 'mbi', 'MBI05_g26511_MAGBIO' => 'mbi', 'MBI14_g30652_MAGBIO' => 'mbi', 'MBI14_g41394_MAGBIO' => 'mbi', 'Os10g0567900' => 'osa', 'Peaxi162Scf00802g00212' => 'pax', 'PGR083G1803' => 'pgr', 'Prupe.1G187600' => 'ppe', 'Prupe.1G529300' => 'ppe', 'PSO013G0107' => 'pso', 'PSO013G0145' => 'pso', 'PSO013G0166' => 'pso', 'PSO013G0258' => 'pso', 'PSO013G0363' => 'pso', 'PSO017G0021' => 'pso', 'PSO017G0199' => 'pso', 'PSO017G0274' => 'pso', 'PSO017G0642' => 'pso', 'PSO017G1150' => 'pso', 'PSO017G1882' => 'pso', 'PSO017G1920' => 'pso', 'PSO017G2047' => 'pso', 'PSO017G2717' => 'pso', 'PSO017G2863' => 'pso', 'PSO017G3000' => 'pso', 'PSO017G3038' => 'pso', 'PSO017G3147' => 'pso', 'PSO017G3555' => 'pso', 'PSO017G3692' => 'pso', 'PSO017G3711' => 'pso', 'PSO017G3977' => 'pso', 'PSO017G4597' => 'pso', 'PSO017G5112' => 'pso', 'PSO017G5398' => 'pso', 'PSO017G5424' => 'pso', 'PSO017G5473' => 'pso', 'PSO017G5609' => 'pso', 'PSO017G5686' => 'pso', 'PSO017G5807' => 'pso', 'PSO017G5915' => 'pso', 'PSO017G6056' => 'pso', 'PSO017G6217' => 'pso', 'PSO017G6252' => 'pso', 'PSO017G6321' => 'pso', 'PSO017G6335' => 'pso', 'PSO017G6347' => 'pso', 'PSO017G6521' => 'pso', 'PSO017G6668' => 'pso', 'PSO017G6760' => 'pso', 'PSO017G6932' => 'pso', 'PSO017G6980' => 'pso', 'PSO017G7020' => 'pso', 'PSO017G7190' => 'pso', 'PSO017G7194' => 'pso', 'PSO017G7233' => 'pso', 'PSO017G7258' => 'pso', 'PSO017G7281' => 'pso', 'PSO017G7303' => 'pso', 'PSO017G7329' => 'pso', 'PSO063G0421' => 'pso', 'PSO063G0663' => 'pso', 'PSO063G0699' => 'pso', 'PSO063G0994' => 'pso', 'PSO063G1530' => 'pso', 'PSO063G1670' => 'pso', 'PSO063G1688' => 'pso', 'PSO063G1814' => 'pso', 'PSO063G1901' => 'pso', 'PSO063G1910' => 'pso', 'PSO063G1937' => 'pso', 'PSO063G1960' => 'pso', 'PSO063G2083' => 'pso', 'PSO063G2197' => 'pso', 'PSO063G2534' => 'pso', 'PSO063G2623' => 'pso', 'PSO063G2625' => 'pso', 'PSO063G2664' => 'pso', 'PSO063G2674' => 'pso', 'PSO063G2861' => 'pso', 'PSO063G2998' => 'pso', 'PSO063G3181' => 'pso', 'PSO063G3313' => 'pso', 'PSO063G3317' => 'pso', 'PSO063G3554' => 'pso', 'PSO063G3692' => 'pso', 'PSO063G4161' => 'pso', 'PSO063G4260' => 'pso', 'PSO063G4299' => 'pso', 'PSO063G4635' => 'pso', 'PSO063G5004' => 'pso', 'PSO063G5009' => 'pso', 'PSO063G5070' => 'pso', 'PSO063G5311' => 'pso', 'PSO063G5382' => 'pso', 'PSO063G5388' => 'pso', 'PSO063G5494' => 'pso', 'PSO063G5632' => 'pso', 'PSO063G6346' => 'pso', 'PSO063G6393' => 'pso', 'PSO063G6622' => 'pso', 'PSO063G6654' => 'pso', 'PSO063G6811' => 'pso', 'PSO063G7162' => 'pso', 'PSO063G7349' => 'pso', 'PSO063G7679' => 'pso', 'PSO081G0024' => 'pso', 'PSO081G0072' => 'pso', 'PSO081G0128' => 'pso', 'PSO081G0144' => 'pso', 'PSO104G0218' => 'pso', 'PSO125G0002' => 'pso', 'PSO135G0022' => 'pso', 'PSO135G0114' => 'pso', 'PSO135G0328' => 'pso', 'PSO135G0345' => 'pso', 'PSO135G0632' => 'pso', 'PSO135G0644' => 'pso', 'PSO135G0715' => 'pso', 'PSO135G0762' => 'pso', 'PSO135G0852' => 'pso', 'PSO135G1042' => 'pso', 'PSO144G0084' => 'pso', 'PSO144G0101' => 'pso', 'PSO144G0103' => 'pso', 'PSO151G0005' => 'pso', 'PSO151G0184' => 'pso', 'PSO151G0220' => 'pso', 'PSO164G0001' => 'pso', 'PSO170G0125' => 'pso', 'PSO170G1426' => 'pso', 'PSO170G1675' => 'pso', 'PSO170G1746' => 'pso', 'PSO170G2375' => 'pso', 'PSO170G2412' => 'pso', 'PSO170G2880' => 'pso', 'PSO170G3649' => 'pso', 'PSO170G3894' => 'pso', 'PSO170G3990' => 'pso', 'PSO170G4154' => 'pso', 'PSO170G4410' => 'pso', 'PSO170G4530' => 'pso', 'PSO170G4566' => 'pso', 'PSO170G4704' => 'pso', 'PSO170G4744' => 'pso', 'PSO170G4766' => 'pso', 'PSO170G5117' => 'pso', 'PSO170G5316' => 'pso', 'PSO170G5474' => 'pso', 'PSO170G5875' => 'pso', 'PSO170G6042' => 'pso', 'PSO170G6046' => 'pso', 'PSO170G6602' => 'pso', 'PSO170G6767' => 'pso', 'PSO170G6788' => 'pso', 'PSO170G6840' => 'pso', 'PSO170G6912' => 'pso', 'PSO173G0009' => 'pso', 'PSO173G0055' => 'pso', 'PSO173G0057' => 'pso', 'PSO173G0121' => 'pso', 'PSO173G0129' => 'pso', 'PSO173G0165' => 'pso', 'PSO173G0170' => 'pso', 'PSO200G0001' => 'pso', 'PSO210G0058' => 'pso', 'PSO210G0095' => 'pso', 'PSO210G0198' => 'pso', 'PSO210G0412' => 'pso', 'PSO210G0454' => 'pso', 'PSO210G0550' => 'pso', 'PSO210G0639' => 'pso', 'PSO210G1380' => 'pso', 'PSO210G1448' => 'pso', 'PSO210G1614' => 'pso', 'PSO210G2013' => 'pso', 'PSO210G2056' => 'pso', 'PSO210G2197' => 'pso', 'PSO210G2295' => 'pso', 'PSO210G2562' => 'pso', 'PSO210G2698' => 'pso', 'PSO210G2789' => 'pso', 'PSO210G2892' => 'pso', 'PSO210G3026' => 'pso', 'PSO210G3074' => 'pso', 'PSO210G3234' => 'pso', 'PSO210G3281' => 'pso', 'PSO210G3369' => 'pso', 'PSO210G3700' => 'pso', 'PSO210G3980' => 'pso', 'PSO210G4060' => 'pso', 'PSO210G4287' => 'pso', 'PSO210G4339' => 'pso', 'PSO210G4357' => 'pso', 'PSO210G4506' => 'pso', 'PSO210G6225' => 'pso', 'PSO210G6233' => 'pso', 'PSO210G6399' => 'pso', 'PSO210G6483' => 'pso', 'PSO210G6767' => 'pso', 'PSO210G6981' => 'pso', 'PSO210G7082' => 'pso', 'PSO210G7219' => 'pso', 'PSO210G7404' => 'pso', 'PSO210G7490' => 'pso', 'PSO210G7723' => 'pso', 'PSO223G0009' => 'pso', 'PSO229G0062' => 'pso', 'PSO229G0156' => 'pso', 'PSO242G0001' => 'pso', 'PSO242G0013' => 'pso', 'PSO242G0021' => 'pso', 'PSO242G0028' => 'pso', 'PSO242G0030' => 'pso', 'PSO242G0043' => 'pso', 'PSO333G0017' => 'pso', 'PSO339G0364' => 'pso', 'PSO339G0579' => 'pso', 'PSO339G0634' => 'pso', 'PSO339G0717' => 'pso', 'PSO339G0751' => 'pso', 'PSO339G0853' => 'pso', 'PSO339G0924' => 'pso', 'PSO339G1155' => 'pso', 'PSO339G1240' => 'pso', 'PSO339G1964' => 'pso', 'PSO339G2044' => 'pso', 'PSO339G2155' => 'pso', 'PSO339G2185' => 'pso', 'PSO339G2375' => 'pso', 'PSO339G2434' => 'pso', 'PSO339G2488' => 'pso', 'PSO339G2682' => 'pso', 'PSO339G2855' => 'pso', 'PSO339G3095' => 'pso', 'PSO339G3276' => 'pso', 'PSO339G3302' => 'pso', 'PSO339G3634' => 'pso', 'PSO339G4005' => 'pso', 'PSO339G4051' => 'pso', 'PSO339G4229' => 'pso', 'PSO339G4264' => 'pso', 'PSO339G4278' => 'pso', 'PSO339G4355' => 'pso', 'PSO339G4370' => 'pso', 'PSO339G4376' => 'pso', 'PSO339G4435' => 'pso', 'PSO339G4744' => 'pso', 'PSO339G4930' => 'pso', 'PSO339G5071' => 'pso', 'PSO339G5111' => 'pso', 'PSO339G5184' => 'pso', 'PSO339G5214' => 'pso', 'PSO339G5313' => 'pso', 'PSO339G5466' => 'pso', 'PSO339G5615' => 'pso', 'PSO339G5861' => 'pso', 'PSO339G5973' => 'pso', 'PSO339G6082' => 'pso', 'PSO339G6156' => 'pso', 'PSO339G6371' => 'pso', 'PSO339G6661' => 'pso', 'PSO339G6675' => 'pso', 'PSO339G6686' => 'pso', 'PSO356G0059' => 'pso', 'PSO357G0199' => 'pso', 'PSO384G0388' => 'pso', 'PSO384G0615' => 'pso', 'PSO384G0673' => 'pso', 'PSO384G0792' => 'pso', 'PSO384G0841' => 'pso', 'PSO384G1517' => 'pso', 'PSO384G1756' => 'pso', 'PSO384G1862' => 'pso', 'PSO384G1864' => 'pso', 'PSO384G1875' => 'pso', 'PSO384G2398' => 'pso', 'PSO384G2421' => 'pso', 'PSO384G2544' => 'pso', 'PSO384G2612' => 'pso', 'PSO384G2682' => 'pso', 'PSO384G2732' => 'pso', 'PSO384G2744' => 'pso', 'PSO384G3062' => 'pso', 'PSO384G3202' => 'pso', 'PSO384G3328' => 'pso', 'PSO384G3441' => 'pso', 'PSO384G3442' => 'pso', 'PSO384G3478' => 'pso', 'PSO384G3676' => 'pso', 'PSO384G3948' => 'pso', 'PSO384G4185' => 'pso', 'PSO384G4275' => 'pso', 'PSO384G4592' => 'pso', 'PSO384G4650' => 'pso', 'PSO384G4830' => 'pso', 'PSO384G4889' => 'pso', 'PSO384G5136' => 'pso', 'PSO386G0131' => 'pso', 'PSO386G0182' => 'pso', 'PSO386G0261' => 'pso', 'PSO407G0031' => 'pso', 'PSO407G0052' => 'pso', 'PSO421G0037' => 'pso', 'PSO421G0110' => 'pso', 'PSO421G0120' => 'pso', 'PSO421G0125' => 'pso', 'PSO421G0130' => 'pso', 'PSO421G0135' => 'pso', 'PSO421G0154' => 'pso', 'PSO421G0179' => 'pso', 'PSO421G0197' => 'pso', 'PSO421G0201' => 'pso', 'PSO421G0230' => 'pso', 'PSO421G0233' => 'pso', 'PSO421G0291' => 'pso', 'PSO421G0335' => 'pso', 'PSO421G0356' => 'pso', 'PSO421G0361' => 'pso', 'PSO421G0429' => 'pso', 'PSO421G0452' => 'pso', 'PSO421G0462' => 'pso', 'PSO421G0539' => 'pso', 'PSO421G0544' => 'pso', 'PSO421G0568' => 'pso', 'PSO421G0571' => 'pso', 'PSO421G0582' => 'pso', 'PSO421G0597' => 'pso', 'PSO421G0620' => 'pso', 'PSO421G0622' => 'pso', 'PSO421G0624' => 'pso', 'PSO421G0629' => 'pso', 'PSO421G0646' => 'pso', 'PSO421G0648' => 'pso', 'PSO478G0026' => 'pso', 'PSO478G0041' => 'pso', 'PSO478G0133' => 'pso', 'PSO478G0654' => 'pso', 'PSO478G0687' => 'pso', 'PSO478G0885' => 'pso', 'PSO478G0982' => 'pso', 'PSO478G1029' => 'pso', 'PSO478G1139' => 'pso', 'PSO478G1140' => 'pso', 'PSO478G1376' => 'pso', 'PSO478G1632' => 'pso', 'PSO478G1973' => 'pso', 'PSO478G2117' => 'pso', 'PSO478G2413' => 'pso', 'PSO478G2718' => 'pso', 'PSO478G2789' => 'pso', 'PSO478G3709' => 'pso', 'PSO478G3961' => 'pso', 'PSO478G4122' => 'pso', 'PSO478G4250' => 'pso', 'PSO478G4322' => 'pso', 'PSO478G4399' => 'pso', 'PSO500G0084' => 'pso', 'PSO513G0121' => 'pso', 'PSO528G0050' => 'pso', 'PSO541G0344' => 'pso', 'PSO541G0749' => 'pso', 'PSO541G0833' => 'pso', 'PSO541G1522' => 'pso', 'PSO541G1639' => 'pso', 'PSO541G1673' => 'pso', 'PSO541G1878' => 'pso', 'PSO541G1891' => 'pso', 'PSO541G1896' => 'pso', 'PSO541G2380' => 'pso', 'PSO541G3157' => 'pso', 'PSO541G3268' => 'pso', 'PSO541G3996' => 'pso', 'PSO541G4356' => 'pso', 'PSO541G4904' => 'pso', 'PSO541G5228' => 'pso', 'PSO541G5431' => 'pso', 'PSO541G5692' => 'pso', 'PSO541G5909' => 'pso', 'PSO541G6060' => 'pso', 'PSO541G6373' => 'pso', 'PSO566G0009' => 'pso', 'PSO566G0027' => 'pso', 'PSO566G0032' => 'pso', 'PSO566G0062' => 'pso', 'PSO566G0073' => 'pso', 'PSO566G0091' => 'pso', 'PSO566G0150' => 'pso', 'PSO566G0158' => 'pso', 'PSO566G0181' => 'pso', 'PSO566G0334' => 'pso', 'PSO566G0339' => 'pso', 'PSO591G0002' => 'pso', 'PSO591G0009' => 'pso', 'PSO591G0057' => 'pso', 'PSO591G0076' => 'pso', 'PSO591G0160' => 'pso', 'PSO591G0199' => 'pso', 'PSO591G0247' => 'pso', 'PSO591G0309' => 'pso', 'PSO591G0339' => 'pso', 'PSO591G0350' => 'pso', 'PSO596G0064' => 'pso', 'PSO605G0001' => 'pso', 'PSO648G0018' => 'pso', 'PSO675G0029' => 'pso', 'PSO675G0419' => 'pso', 'PSO675G0641' => 'pso', 'PSO675G0646' => 'pso', 'PSO675G0681' => 'pso', 'PSO675G0829' => 'pso', 'PSO675G0899' => 'pso', 'PSO675G0948' => 'pso', 'PSO675G1070' => 'pso', 'PSO675G1098' => 'pso', 'PSO675G1175' => 'pso', 'PSO675G1200' => 'pso', 'PSO675G1321' => 'pso', 'PSO675G1361' => 'pso', 'PSO675G1513' => 'pso', 'PSO675G1555' => 'pso', 'PSO675G1596' => 'pso', 'PSO675G1785' => 'pso', 'PSO675G1941' => 'pso', 'PSO675G1967' => 'pso', 'PSO675G2004' => 'pso', 'PSO675G2080' => 'pso', 'PSO675G2097' => 'pso', 'PSO675G2289' => 'pso', 'PSO675G2448' => 'pso', 'PSO675G2823' => 'pso', 'PSO675G2830' => 'pso', 'PSO675G2857' => 'pso', 'PSO675G2969' => 'pso', 'PSO675G3009' => 'pso', 'PSO675G3153' => 'pso', 'PSO675G3185' => 'pso', 'PSO675G3364' => 'pso', 'PSO675G3399' => 'pso', 'PSO675G3769' => 'pso', 'PSO675G3816' => 'pso', 'PSO675G3891' => 'pso', 'PSO675G3894' => 'pso', 'PSO675G3899' => 'pso', 'PSO675G3972' => 'pso', 'PSO675G4085' => 'pso', 'PSO675G4172' => 'pso', 'PSO675G4194' => 'pso', 'PSO675G4360' => 'pso', 'PSO675G4433' => 'pso', 'PSO675G4507' => 'pso', 'PSO675G4540' => 'pso', 'PSO675G5470' => 'pso', 'PSO675G5530' => 'pso', 'PSO675G5665' => 'pso', 'PSO675G5716' => 'pso', 'PSO675G5740' => 'pso', 'PSO675G5802' => 'pso', 'PSO675G5871' => 'pso', 'PSO675G6198' => 'pso', 'PSO675G6234' => 'pso', 'PSO675G6586' => 'pso', 'PSO675G6799' => 'pso', 'PSO675G6805' => 'pso', 'PSO675G6896' => 'pso', 'PSO675G7186' => 'pso', 'PSO675G7292' => 'pso', 'PSO675G7439' => 'pso', 'PSO675G7464' => 'pso', 'PSO675G7601' => 'pso', 'PSO675G7647' => 'pso', 'PSO675G7781' => 'pso', 'PSO675G7809' => 'pso', 'PSO675G7928' => 'pso', 'PSO675G8184' => 'pso', 'PSO675G8213' => 'pso', 'PSO675G8333' => 'pso', 'PSO675G8397' => 'pso', 'PSO675G8483' => 'pso', 'PSO675G8750' => 'pso', 'PSO675G8918' => 'pso', 'PSO675G8980' => 'pso', 'PSO675G8986' => 'pso', 'PSO711G0001' => 'pso', 'PSO717G0120' => 'pso', 'PSO724G0075' => 'pso', 'PSO724G0980' => 'pso', 'PSO729G0018' => 'pso', 'PSO729G0062' => 'pso', 'PSO729G0264' => 'pso', 'PSO732G0122' => 'pso', 'PSO732G0133' => 'pso', 'PSO732G0287' => 'pso', 'PSO732G0293' => 'pso', 'PSO732G0296' => 'pso', 'PSO732G0317' => 'pso', 'PSO732G0373' => 'pso', 'PSO732G0402' => 'pso', 'PSO732G0517' => 'pso', 'PSO732G0550' => 'pso', 'PSO732G0613' => 'pso', 'PSO732G0636' => 'pso', 'PSO732G0690' => 'pso', 'PSO732G0697' => 'pso', 'PSO732G0705' => 'pso', 'PSO732G0780' => 'pso', 'PSO761G0215' => 'pso', 'PSO761G0457' => 'pso', 'PSO761G0481' => 'pso', 'PSO782G0120' => 'pso', 'PSO782G0256' => 'pso', 'PSO782G0291' => 'pso', 'PSO782G0559' => 'pso', 'PSO782G0787' => 'pso', 'PSO782G1296' => 'pso', 'PSO782G1406' => 'pso', 'PSO782G1420' => 'pso', 'PSO782G1518' => 'pso', 'PSO782G1641' => 'pso', 'PSO782G2066' => 'pso', 'PSO782G2302' => 'pso', 'PSO782G2496' => 'pso', 'PSO782G2795' => 'pso', 'PSO782G2811' => 'pso', 'PSO782G2820' => 'pso', 'PSO782G2971' => 'pso', 'PSO782G3125' => 'pso', 'PSO782G3264' => 'pso', 'PSO782G3284' => 'pso', 'PSO782G3377' => 'pso', 'PSO782G3717' => 'pso', 'PSO782G3874' => 'pso', 'PSO782G4030' => 'pso', 'PSO782G4139' => 'pso', 'PSO782G4336' => 'pso', 'PSO782G4563' => 'pso', 'PSO782G4959' => 'pso', 'PSO782G5457' => 'pso', 'PSO782G5496' => 'pso', 'PSO782G5527' => 'pso', 'PSO800G0001' => 'pso', 'PSO801G0149' => 'pso', 'PSO801G0163' => 'pso', 'PSO801G0227' => 'pso', 'PSO801G0297' => 'pso', 'PSO801G0352' => 'pso', 'PSO801G0485' => 'pso', 'PSO801G0539' => 'pso', 'PSO801G0590' => 'pso', 'PSO801G0763' => 'pso', 'PSO801G0772' => 'pso', 'PSO801G0842' => 'pso', 'PSO824G0021' => 'pso', 'PSO824G0099' => 'pso', 'PSO832G0023' => 'pso', 'PSO832G0027' => 'pso', 'PSO832G0063' => 'pso', 'PSO832G0121' => 'pso', 'PSO832G0155' => 'pso', 'PSO832G0399' => 'pso', 'PSO832G0414' => 'pso', 'PSO832G0417' => 'pso', 'PSO832G0459' => 'pso', 'PSO832G0561' => 'pso', 'PSO832G0564' => 'pso', 'PSO832G0591' => 'pso', 'PSO832G0673' => 'pso', 'PSO832G0675' => 'pso', 'PSO832G0725' => 'pso', 'PSO832G0871' => 'pso', 'PSO832G0873' => 'pso', 'PSO832G0961' => 'pso', 'PSO832G0972' => 'pso', 'PSO832G1004' => 'pso', 'PSO832G1025' => 'pso', 'PSO832G1176' => 'pso', 'PSO832G1216' => 'pso', 'PSO832G1314' => 'pso', 'PSO832G1354' => 'pso', 'PSO832G1377' => 'pso', 'PSO832G1523' => 'pso', 'PSO832G1527' => 'pso', 'PSO832G1545' => 'pso', 'PSO832G1570' => 'pso', 'PSO832G1597' => 'pso', 'PSO832G1615' => 'pso', 'PSO832G1623' => 'pso', 'PSO832G1643' => 'pso', 'PSO832G1703' => 'pso', 'PSO832G1958' => 'pso', 'PSO832G2052' => 'pso', 'PSO832G2113' => 'pso', 'PSO832G2280' => 'pso', 'PSO832G2415' => 'pso', 'PSO832G2465' => 'pso', 'PSO832G2474' => 'pso', 'PSO832G2595' => 'pso', 'PSO832G2701' => 'pso', 'PSO832G2733' => 'pso', 'PSO832G2765' => 'pso', 'PSO832G2807' => 'pso', 'PSO832G2824' => 'pso', 'PSO832G2946' => 'pso', 'PSO832G3011' => 'pso', 'PSO832G3025' => 'pso', 'PSO832G3397' => 'pso', 'PSO832G3400' => 'pso', 'PSO832G3430' => 'pso', 'PSO832G3431' => 'pso', 'PSO832G3436' => 'pso', 'PSO832G3443' => 'pso', 'PSO832G3460' => 'pso', 'PSO832G3526' => 'pso', 'PSO832G3529' => 'pso', 'PSO832G3654' => 'pso', 'PSO832G3687' => 'pso', 'PSO832G3689' => 'pso', 'PSO832G3750' => 'pso', 'PSO832G3813' => 'pso', 'PSO832G3880' => 'pso', 'PSO832G3898' => 'pso', 'PSO832G3928' => 'pso', 'PSO832G3935' => 'pso', 'PSO832G4020' => 'pso', 'PSO832G4085' => 'pso', 'PSO832G4121' => 'pso', 'PSO832G4171' => 'pso', 'PSO832G4285' => 'pso', 'PSO832G4418' => 'pso', 'PSO832G4450' => 'pso', 'PSO832G4480' => 'pso', 'PSO832G4524' => 'pso', 'RcHm_v2.0_Chr6g0309611' => 'rch', 'Rhsim04G0044000' => 'rsi', 'Rhsim12G0150000' => 'rsi', 'Solyc05g010220.2' => 'sly', 'TAR371G0078' => 'tar', 'TAR624G0230' => 'tar', 'TAR624G0496' => 'tar', 'unitig_62.g23128' => 'ugi', 'vmacro16481' => 'vma' ) $gf_id = 'ORTHO05D000676' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000676' ) $data_identifier = 'ORTHO05D000676' $data_type = 'gf_id' $species_gene_counts = array( 'ach' => (int) 1, 'amhyb' => (int) 2, 'aox' => (int) 21, 'cansat' => (int) 2, 'col' => (int) 6, 'camsi' => (int) 3, 'din' => (int) 2, 'eca' => (int) 2, 'fan' => (int) 1, 'fve' => (int) 2, 'han' => (int) 4, 'hma' => (int) 1, 'mbi' => (int) 4, 'osa' => (int) 1, 'pax' => (int) 1, 'pgr' => (int) 1, 'ppe' => (int) 2, 'pso' => (int) 622, 'rch' => (int) 1, 'rsi' => (int) 2, 'sly' => (int) 1, 'tar' => (int) 3, 'ugi' => (int) 1, 'vma' => (int) 1 ) $gf_gene_species = 'vma' $gf_gene_id = 'vmacro16481' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1