Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p20300 Brassica napus
Aa31LG2G13090 Aethionema arabicum
Actinidia10861 Actinidia chinensis
Ah.07g196390 Amaranthus hybridus
AL7G37710 Arabidopsis lyrata
Aqoxy7G03487 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea
AT4G17010 Arabidopsis thaliana
ATR0767G234 Amborella trichopoda
Atru.chr9.1220 Acer truncatum
AUR62010708 Chenopodium quinoa
AUR62017180 Chenopodium quinoa
AUR62027260 Chenopodium quinoa
BcaC09g50434 Brassica carinata
BcaNung00135 Brassica carinata
BolC1t02497H Brassica oleracea
BraA01t01958Z Brassica rapa
C01p25460 Brassica napus
CAN.G761.17 Capsicum annuum
CANSAT21G1845 Cannabis sativa
CARHR223570 Cardamine hirsuta
Carub.0007s2441 Capsella rubella
Ca_20510_v3 Cicer arietinum L.
Cc02_g08620 Coffea canephora
CDE04G1348 Ceratophyllum demersum
Ciclev10022620m.g Citrus clementina
CiPaw.12G047200 Carya illinoinensis
ClCG09G012770 Citrullus lanatus
COL.COLO4_07508 Corchorus olitorius
Cpa.g.sc1152.2 Carica papaya
CsaV3_3G049830 Cucumis sativus L.
CSS0030063 Camellia sinensis var. sinensis
CSS0033428 Camellia sinensis var. sinensis
DCAR_005581 Daucus carota
DCAR_008334 Daucus carota
Dinv21692 Davidia involucrata
Duzib068G0643 Durio zibethinus
ECA248G1075 Erigeron canadensis
EL10Ac5g12797 Beta vulgaris
Eucgr.D02128 Eucalyptus grandis
FAN04G0567 Fragaria x ananassa
FAN08G3523 Fragaria x ananassa
FAN13G2154 Fragaria x ananassa
FAN13G3051 Fragaria x ananassa
FvH4_5g20230 Fragaria vesca
Glyma.09G078400 Glycine max
Glyma.16G092500 Glycine max
Gohir.A12G213600 Gossypium hirsutum
Gohir.D12G216200 Gossypium hirsutum
Gorai.008G231600 Gossypium raimondii
HanXRQChr17g0550021 Helianthus annuus
Haze_05448 Corylus avellana
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla
Hma1.2p1_0871F.1_g231040 Hydrangea macrophylla
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla
HPP92_005702 Vanilla planifolia
Hund11457 Selenicereus undatus
Lalb_Chr15g0078661 Lupinus albus
Lalb_Chr18g0047251 Lupinus albus
Lj2A228G47 Lonicera japonica
Lj2A721G5 Lonicera japonica
Lj3A721T48 Lonicera japonica
Lj3g0001636 Lotus japonicus
Lsat_1_v5_gn_3_16181 Lactuca sativa
Manes.01G087450 Manihot esculenta
Manes.02G044300 Manihot esculenta
MBI06_g25325_MAGBIO Magnolia biondii
MBI15_g37973_MAGBIO Magnolia biondii
MBI15_g47175_MAGBIO Magnolia biondii
MD04G1051900 Malus domestica
MD06G1048200 Malus domestica
Medtr3g086600 Medicago truncatula
MELO3C003333.2 Cucumis melo
Migut.I00620 Erythranthe guttata
MSTRG.9371 Avicennia marina
Nitab4.5_0000500g0150 Nicotiana tabacum
Nitab4.5_0000506g0080 Nicotiana tabacum
Nitab4.5_0003456g0030 Nicotiana tabacum
Nitab4.5_0007628g0010 Nicotiana tabacum
Nn1g00796 Nelumbo nucifera
Nn5g28476 Nelumbo nucifera
Oeu017209.1 Olea europaea
Oeu040676.1 Olea europaea
Os02g0494600 Oryza sativa ssp. japonica
Os04g0431800 Oryza sativa ssp. japonica
Peaxi162Scf00190g00088 Petunia axillaris
PGR031G0321 Punica granatum
PGSC0003DMG400026249 Solanum tuberosum
PGSC0003DMG400026577 Solanum tuberosum
Phvul.010G018500 Phaseolus vulgaris
Potri.012G038600 Populus trichocarpa
Prupe.5G058400 Prunus persica
Psat5g091640 Pisum sativum
PSO541G2943 Papaver somniferum
PSO675G9254 Papaver somniferum
QL12p009037 Quercus lobata
RcHm_v2.0_Chr7g0205301 Rosa chinensis
Rhsim07G0118700 Rhododendron simsii
Rhsim07G0118900 Rhododendron simsii
Sabra12G0027000 Salix brachista
SalBow1G4160 Salvia bowleyana
Sc22g0005540 Simmondsia chinensis
Sed0014825 Sechium edule
Sed0021147 Sechium edule
SEGI_12345 Sequoiadendron giganteum
SGA_v2.0_scaffold377G50308 Striga asiatica
SGA_v2.0_scaffold40G15681 Striga asiatica
SGA_v2.0_scaffold74G24651 Striga asiatica
Solyc06g060920.3 Solanum lycopersicum
Solyc08g077970.2 Solanum lycopersicum
Sopen06g021070 Solanum pennellii
Sopen08g026480 Solanum pennellii
Sp7g17180 Schrenkiella parvula
TAR375G0576 Trochodendron aralioides
THA.LOC104807925 Tarenaya hassleriana
THA.LOC104812735 Tarenaya hassleriana
THA.LOC104814463 Tarenaya hassleriana
Thecc.01G153900 Theobroma cacao
Thecc.03G242700 Theobroma cacao
Thhalv10026445m.g Eutrema salsugineum
TPR.G30538 Trifolium pratense
TWI15G0129 Tripterygium wilfordii
unitig_46.g17987 Utricularia gibba
unitig_747.g21320 Utricularia gibba
vmacro00048 Vaccinium macrocarpon
vmacro14126 Vaccinium macrocarpon
VMungo0331G0425 Vigna mungo
Zm00001eb422600 Zea mays

User provided reference genes

Program Settings